Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35249 * 126.69092 * 2 1 4 4 C 1.42032 * 103.95363 * 179.97438 * 3 2 1 5 5 N 1.39502 * 126.89109 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00579 * 0.02562 * 5 4 3 7 7 O 1.21276 * 119.99370 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00352 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47090 * 179.97438 * 8 6 5 10 10 N 1.46902 * 109.46896 * 179.97438 * 9 8 6 11 11 C 1.46904 * 111.00052 * 293.95359 * 10 9 8 12 12 C 1.46904 * 110.99898 * 170.00103 * 10 9 8 13 13 H 1.09005 * 109.47066 * 309.99638 * 12 10 9 14 14 C 1.52998 * 109.47316 * 70.00014 * 12 10 9 15 15 C 1.50700 * 109.47241 * 190.00177 * 12 10 9 16 16 H 1.08004 * 119.99534 * 354.52088 * 15 12 10 17 17 C 1.37878 * 120.00180 * 174.52923 * 15 12 10 18 18 N 1.31510 * 119.99760 * 160.59098 * 17 15 12 19 19 Si 1.86796 * 119.99790 * 340.86338 * 17 15 12 20 20 H 1.48503 * 109.47098 * 179.72449 * 19 17 15 21 21 H 1.48500 * 109.47352 * 299.72696 * 19 17 15 22 22 H 1.48505 * 109.47038 * 59.73082 * 19 17 15 23 23 N 1.30715 * 106.21007 * 0.23927 * 4 3 2 24 24 O 1.20911 * 111.47684 * 359.57568 * 23 4 3 25 25 H 1.08994 * 109.47310 * 89.99793 * 1 2 3 26 26 H 1.08996 * 109.47088 * 209.99841 * 1 2 3 27 27 H 1.09006 * 109.47333 * 329.99865 * 1 2 3 28 28 H 1.07998 * 128.02704 * 359.94940 * 3 2 1 29 29 H 0.97003 * 119.99488 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47029 * 59.99669 * 8 6 5 31 31 H 1.08996 * 109.46923 * 299.99742 * 8 6 5 32 32 H 1.09001 * 109.47124 * 60.00132 * 9 8 6 33 33 H 1.09005 * 109.47160 * 299.99778 * 9 8 6 34 34 H 1.08999 * 109.46999 * 296.04797 * 11 10 9 35 35 H 1.09002 * 109.46820 * 56.04612 * 11 10 9 36 36 H 1.08994 * 109.46697 * 176.04798 * 11 10 9 37 37 H 1.09008 * 109.46955 * 305.13432 * 14 12 10 38 38 H 1.08999 * 109.47202 * 65.12707 * 14 12 10 39 39 H 1.08997 * 109.47409 * 185.13274 * 14 12 10 40 40 H 0.96996 * 120.00673 * 2.37574 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6250 0.5356 0.0006 5 7 4.8286 1.2409 0.0004 6 6 4.8200 2.5886 0.0000 7 8 3.7658 3.1882 -0.0006 8 6 6.1202 3.3505 -0.0009 9 6 5.8309 4.8529 -0.0018 10 7 7.0984 5.5955 -0.0021 11 6 7.8339 5.3820 1.2515 12 6 6.8698 7.0269 -0.2411 13 1 6.2326 7.1518 -1.1166 14 6 6.1859 7.6450 0.9799 15 6 8.1901 7.7136 -0.4787 16 1 9.1127 7.1633 -0.3674 17 6 8.2201 9.0444 -0.8378 18 7 9.3222 9.7439 -0.6779 19 14 6.6932 9.8558 -1.5446 20 1 6.9826 11.2818 -1.8410 21 1 6.2972 9.1606 -2.7956 22 1 5.5858 9.7700 -0.5588 23 7 3.4765 -0.7631 -0.0043 24 8 2.3083 -1.0751 0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 2.0304 2.1263 -0.0008 29 1 5.6718 0.7613 0.0012 30 1 6.6930 3.0905 -0.8911 31 1 6.6938 3.0911 0.8889 32 1 5.2579 5.1131 0.8881 33 1 5.2574 5.1119 -0.8919 34 1 7.2589 5.7879 2.0838 35 1 7.9895 4.3140 1.4040 36 1 8.7989 5.8857 1.1968 37 1 5.2757 7.0895 1.2066 38 1 6.8604 7.6016 1.8350 39 1 5.9341 8.6841 0.7681 40 1 10.1239 9.3154 -0.3395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177364310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = 12.720631 kcal Electronic energy + Delta-G solvation = -21729.349971 eV Core-core repulsion = 18354.119937 eV Total energy + Delta-G solvation = -3375.230034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.94107 -41.31399 -39.12781 -36.75593 -35.07508 -34.58823 -33.49206 -32.54278 -30.37916 -28.68157 -27.44231 -26.93453 -25.13114 -23.82997 -22.18024 -21.62766 -20.81045 -19.38680 -18.77577 -18.48815 -18.15414 -17.63965 -16.98166 -16.73032 -15.80998 -15.61109 -15.41491 -15.05124 -14.66368 -14.56101 -14.37815 -13.99937 -13.91959 -13.56811 -13.40373 -13.30928 -13.03783 -12.91728 -12.74588 -12.37584 -12.34544 -12.25163 -11.80882 -11.69842 -11.56328 -11.20637 -11.01100 -10.42307 -10.31883 -9.96325 -9.01086 -8.69917 -6.27775 0.33982 0.88814 1.41241 1.46916 1.54237 1.71698 1.72445 2.18393 2.50849 3.09488 3.11855 3.32504 3.63902 3.81950 4.00647 4.04770 4.16946 4.35019 4.43211 4.49043 4.56304 4.63686 4.71934 4.73106 4.75504 4.83054 4.86280 4.93493 4.96437 5.10213 5.16535 5.23776 5.30190 5.47909 5.84433 6.02502 6.10097 6.27613 6.55449 6.75466 6.82975 7.23649 7.47246 8.69212 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034527 B = 0.003100 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.773939 B = 9029.289863 C = 9536.340584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.005 4.005 3 C -0.257 4.257 4 C 0.235 3.765 5 N -0.625 5.625 6 C 0.532 3.468 7 O -0.542 6.542 8 C -0.119 4.119 9 C 0.068 3.932 10 N -0.538 5.538 11 C 0.034 3.966 12 C 0.187 3.813 13 H 0.029 0.971 14 C -0.178 4.178 15 C -0.583 4.583 16 H 0.028 0.972 17 C -0.020 4.020 18 N -0.940 5.940 19 Si 1.078 2.922 20 H -0.290 1.290 21 H -0.267 1.267 22 H -0.246 1.246 23 N -0.412 5.412 24 O 0.089 5.911 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.182 0.818 29 H 0.433 0.567 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -20.991 2.816 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.280 4.280 4 C -0.014 4.014 5 N -0.278 5.278 6 C 0.320 3.680 7 O -0.417 6.417 8 C -0.159 4.159 9 C -0.060 4.060 10 N -0.262 5.262 11 C -0.114 4.114 12 C 0.078 3.922 13 H 0.047 0.953 14 C -0.237 4.237 15 C -0.621 4.621 16 H 0.046 0.954 17 C -0.218 4.218 18 N -0.576 5.576 19 Si 0.901 3.099 20 H -0.217 1.217 21 H -0.192 1.192 22 H -0.171 1.171 23 N -0.130 5.130 24 O 0.030 5.970 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.199 0.801 29 H 0.272 0.728 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.159 -20.305 1.874 26.650 hybrid contribution 1.130 -0.314 1.231 1.700 sum -16.029 -20.619 3.104 26.301 Atomic orbital electron populations 1.20618 0.80390 1.06261 1.05762 1.25152 0.98043 0.84560 0.99133 1.22795 0.89717 1.02471 1.13002 1.20880 0.89500 0.89096 1.01953 1.42608 1.06354 1.06313 1.72546 1.21229 0.92495 0.80555 0.73697 1.90648 1.34225 1.68545 1.48249 1.21576 0.93042 0.93723 1.07520 1.21778 0.90975 0.92233 1.01056 1.62118 1.19177 1.10153 1.34720 1.22291 0.98016 1.01300 0.89783 1.19468 0.94968 0.84602 0.93115 0.95269 1.22705 0.99018 1.01264 1.00729 1.22081 0.92529 0.97019 1.50504 0.95381 1.26992 1.04869 0.95394 0.94547 1.70997 1.03310 1.37764 1.45557 0.83646 0.73216 0.75245 0.77836 1.21673 1.19171 1.17124 1.74017 0.98431 1.13256 1.27281 1.84749 1.10334 1.32922 1.68952 0.87542 0.87813 0.87685 0.80125 0.72796 0.85738 0.85889 0.94958 0.91642 0.96007 0.89532 0.93884 0.93329 0.93827 0.93148 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 71.24 0.74 0.22 16 2 C -0.01 -0.09 7.48 25.00 0.19 0.10 16 3 C -0.26 -5.87 9.79 22.52 0.22 -5.65 16 4 C 0.23 5.70 8.18 134.11 1.10 6.80 16 5 N -0.63 -12.87 5.42 -309.53 -1.68 -14.55 16 6 C 0.53 12.67 7.79 87.66 0.68 13.36 16 7 O -0.54 -16.39 13.26 -3.02 -0.04 -16.43 16 8 C -0.12 -2.61 5.63 29.85 0.17 -2.45 16 9 C 0.07 2.15 3.82 86.30 0.33 2.48 16 10 N -0.54 -20.84 4.70 -901.44 -4.24 -25.08 16 11 C 0.03 1.20 8.62 127.69 1.10 2.30 16 12 C 0.19 8.62 1.89 44.17 0.08 8.71 16 13 H 0.03 1.38 6.57 -2.38 -0.02 1.36 16 14 C -0.18 -7.58 8.03 71.98 0.58 -7.00 16 15 C -0.58 -32.57 8.32 25.60 0.21 -32.36 16 16 H 0.03 1.73 7.15 -2.91 -0.02 1.71 16 17 C -0.02 -1.14 5.33 84.66 0.45 -0.69 16 18 N -0.94 -58.69 13.70 21.45 0.29 -58.39 16 19 Si 1.08 49.90 26.47 68.60 1.82 51.71 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.25 -10.20 5.56 99.48 0.55 -9.65 16 23 N -0.41 -10.05 12.10 -56.32 -0.68 -10.73 16 24 O 0.09 1.88 11.19 71.24 0.80 2.68 16 25 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.18 4.48 6.22 -2.91 -0.02 4.46 16 29 H 0.43 6.25 8.82 -92.71 -0.82 5.43 16 30 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.12 2.15 6.47 -2.39 -0.02 2.13 16 32 H 0.03 1.05 6.90 -2.39 -0.02 1.03 16 33 H 0.07 2.21 7.89 -2.38 -0.02 2.19 16 34 H 0.02 0.75 6.33 -2.39 -0.02 0.73 16 35 H 0.09 2.28 6.30 -2.39 -0.02 2.26 16 36 H 0.04 1.78 6.75 -2.39 -0.02 1.76 16 37 H 0.05 1.81 6.70 -2.38 -0.02 1.79 16 38 H 0.04 1.88 6.64 -2.39 -0.02 1.86 16 39 H 0.05 2.19 4.92 -2.39 -0.01 2.18 16 40 H 0.25 15.95 8.72 -92.71 -0.81 15.14 16 Total: -1.00 -72.78 320.91 2.19 -70.59 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.07 Total: 14.39 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 5.86 Total: -14.20 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -6.31 Total: -108.75 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.76 Total: -13.75 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 1.82 Total: 51.71 kcal Total: -72.78 2.19 -70.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177364310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.310 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds