Wall clock time and date at job start Tue Mar 31 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00132 * 2 1 4 4 O 1.20823 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00111 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47495 * 179.97438 * 5 3 2 7 7 C 1.37104 * 120.00248 * 270.00437 * 6 5 3 8 8 H 1.07995 * 119.99990 * 140.83311 * 7 6 5 9 9 C 1.38952 * 119.99610 * 320.82833 * 7 6 5 10 10 N 1.31414 * 119.99818 * 162.19988 * 9 7 6 11 11 Si 1.86797 * 120.00199 * 342.19925 * 9 7 6 12 12 H 1.48506 * 109.47177 * 95.56655 * 11 9 7 13 13 H 1.48493 * 109.47594 * 215.56987 * 11 9 7 14 14 H 1.48504 * 109.47327 * 335.56974 * 11 9 7 15 15 C 1.34783 * 119.99885 * 89.99641 * 6 5 3 16 16 O 1.21291 * 119.99873 * 5.48368 * 15 6 5 17 17 C 1.50693 * 119.99714 * 185.47917 * 15 6 5 18 18 C 1.53005 * 109.46940 * 186.32865 * 17 15 6 19 19 H 1.08994 * 109.36094 * 304.73034 * 18 17 15 20 20 C 1.50070 * 109.35452 * 64.31365 * 18 17 15 21 21 C 1.29440 * 124.07440 * 137.33919 * 20 18 17 22 22 C 1.50161 * 124.14948 * 359.76114 * 21 20 18 23 23 C 1.53022 * 110.09480 * 16.71121 * 22 21 20 24 24 C 1.53022 * 109.35969 * 184.99989 * 18 17 15 25 25 H 1.09003 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46680 * 299.99855 * 1 2 3 27 27 H 1.08999 * 109.46953 * 59.99562 * 1 2 3 28 28 H 1.09009 * 109.47259 * 59.99787 * 5 3 2 29 29 H 1.09003 * 109.46980 * 300.00320 * 5 3 2 30 30 H 0.96995 * 119.99671 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.47442 * 66.33312 * 17 15 6 32 32 H 1.08993 * 109.47571 * 306.33036 * 17 15 6 33 33 H 1.08001 * 117.96553 * 317.31346 * 20 18 17 34 34 H 1.08004 * 117.96115 * 179.55503 * 21 20 18 35 35 H 1.09002 * 109.20707 * 256.63650 * 22 21 20 36 36 H 1.08998 * 109.56589 * 137.02015 * 22 21 20 37 37 H 1.09003 * 109.64046 * 191.09481 * 23 22 21 38 38 H 1.09000 * 109.63545 * 70.68274 * 23 22 21 39 39 H 1.08999 * 109.64227 * 70.67736 * 24 18 17 40 40 H 1.09003 * 109.64407 * 310.04467 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1757 3.3368 -1.1886 8 1 3.8639 4.3654 -1.2938 9 6 4.7735 2.6793 -2.2569 10 7 4.6514 3.1581 -3.4746 11 14 5.7509 1.1149 -1.9621 12 1 4.8801 -0.0647 -2.1983 13 1 6.9073 1.0708 -2.8925 14 1 6.2421 1.0947 -0.5608 15 6 4.1733 3.3261 1.1660 16 8 4.0991 2.7203 2.2141 17 6 4.4797 4.8016 1.1684 18 6 4.8058 5.2523 2.5937 19 1 3.9835 4.9809 3.2556 20 6 6.0594 4.5696 3.0567 21 6 7.0084 5.1604 3.7093 22 6 6.9916 6.6127 4.0907 23 6 5.5705 7.1691 3.9795 24 6 4.9941 6.7708 2.6150 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.9558 0.7808 -0.8909 29 1 3.9564 0.7804 0.8891 30 1 5.0690 2.6993 -4.2202 31 1 3.6138 5.3532 0.8021 32 1 5.3348 4.9962 0.5212 33 1 6.1771 3.5198 2.8318 34 1 7.8653 4.5714 4.0010 35 1 7.6499 7.1668 3.4216 36 1 7.3444 6.7250 5.1159 37 1 5.5948 8.2556 4.0640 38 1 4.9512 6.7536 4.7744 39 1 4.0321 7.2614 2.4663 40 1 5.6851 7.0654 1.8251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188149607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:26 Heat of formation + Delta-G solvation = -104.455897 kcal Electronic energy + Delta-G solvation = -22825.478460 eV Core-core repulsion = 19412.874519 eV Total energy + Delta-G solvation = -3412.603941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06746 -39.13768 -37.80977 -35.92960 -34.87096 -32.24296 -32.02760 -30.70120 -29.17357 -27.20700 -26.01579 -24.73230 -22.15415 -21.76597 -20.71999 -19.04659 -17.58607 -17.46907 -17.09919 -16.56182 -15.88779 -15.76634 -15.39924 -15.14800 -14.45640 -14.01006 -13.95828 -13.33095 -13.21660 -12.95982 -12.77979 -12.44739 -12.38474 -12.26762 -11.89477 -11.79791 -11.65395 -11.49750 -11.09054 -10.84947 -10.65734 -10.46048 -10.36622 -10.18659 -10.08597 -9.90607 -9.76195 -9.32651 -8.70223 -8.59350 -7.97815 -6.54952 -4.20312 2.72518 2.82196 2.94820 2.99714 3.16066 3.18777 3.73722 4.00107 4.25988 4.85778 4.99251 5.03803 5.12232 5.34964 5.42469 5.43214 5.53010 5.55936 5.65071 5.70146 5.77052 5.78754 5.81975 5.86103 5.99215 6.08098 6.13414 6.18476 6.24608 6.37011 6.47627 6.69976 6.78707 6.83007 7.09153 7.16897 7.36836 7.96233 8.15064 8.37238 8.83040 9.19191 9.51056 10.55605 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.005857 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.893894 B = 4779.428496 C = 5653.311430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.107 3.893 6 N -0.454 5.454 7 C -0.339 4.339 8 H 0.108 0.892 9 C 0.065 3.935 10 N -0.857 5.857 11 Si 0.864 3.136 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.500 3.500 16 O -0.590 6.590 17 C -0.111 4.111 18 C -0.046 4.046 19 H 0.084 0.916 20 C -0.115 4.115 21 C -0.187 4.187 22 C -0.085 4.085 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.277 0.723 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 0.791 8.341 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.176 5.176 7 C -0.466 4.466 8 H 0.126 0.874 9 C -0.143 4.143 10 N -0.491 5.491 11 Si 0.691 3.309 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.180 1.180 15 C 0.291 3.709 16 O -0.474 6.474 17 C -0.150 4.150 18 C -0.065 4.065 19 H 0.102 0.898 20 C -0.133 4.133 21 C -0.205 4.205 22 C -0.122 4.122 23 C -0.156 4.156 24 C -0.153 4.153 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.106 0.799 8.630 8.667 hybrid contribution 0.195 -0.947 -0.375 1.037 sum 0.301 -0.147 8.255 8.262 Atomic orbital electron populations 1.23140 0.77546 1.02844 1.02256 1.86525 1.22681 1.34559 1.84918 1.24790 0.92869 0.81198 0.72254 1.90607 1.66602 1.36242 1.43943 1.21336 0.86747 0.88936 1.04770 1.43447 1.59061 1.08237 1.06842 1.19106 1.40211 0.99680 0.87619 0.87406 1.25370 0.95941 0.98172 0.94807 1.69720 1.40424 1.40521 0.98474 0.87106 0.80868 0.83022 0.79889 1.19701 1.20751 1.17980 1.20524 0.77706 0.89967 0.82726 1.90543 1.55911 1.69124 1.31820 1.21415 1.03774 0.93140 0.96713 1.19901 0.96733 0.93525 0.96342 0.89813 1.22230 0.94417 1.00193 0.96458 1.21918 0.99491 0.96233 1.02892 1.20389 0.97081 0.94050 1.00642 1.21582 0.96355 0.99767 0.97911 1.21663 1.01000 0.95375 0.97262 0.88721 0.92348 0.92167 0.88108 0.86883 0.91303 0.89336 0.88615 0.87318 0.88649 0.91523 0.91912 0.92154 0.91993 0.91762 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.95 10.57 -39.25 -0.41 -7.36 16 3 C 0.45 9.94 8.02 36.00 0.29 10.23 16 4 O -0.49 -12.04 16.18 -18.75 -0.30 -12.34 16 5 C 0.11 2.40 4.79 -5.20 -0.02 2.38 16 6 N -0.45 -10.94 1.66 -116.10 -0.19 -11.13 16 7 C -0.34 -8.75 8.95 -14.93 -0.13 -8.88 16 8 H 0.11 2.93 7.46 -52.49 -0.39 2.54 16 9 C 0.06 1.67 5.37 -17.47 -0.09 1.58 16 10 N -0.86 -23.28 13.96 55.50 0.77 -22.50 16 11 Si 0.86 19.41 24.80 -169.99 -4.22 15.20 16 12 H -0.27 -5.80 6.75 56.52 0.38 -5.41 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.26 -5.70 7.09 56.52 0.40 -5.30 16 15 C 0.50 11.43 7.12 -10.99 -0.08 11.35 16 16 O -0.59 -14.14 14.08 5.55 0.08 -14.06 16 17 C -0.11 -2.14 3.79 -27.88 -0.11 -2.24 16 18 C -0.05 -0.78 2.11 -92.06 -0.19 -0.98 16 19 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 20 C -0.11 -1.96 8.44 -35.90 -0.30 -2.26 16 21 C -0.19 -2.74 9.80 -35.85 -0.35 -3.09 16 22 C -0.08 -1.03 6.13 -28.13 -0.17 -1.20 16 23 C -0.12 -1.43 6.00 -26.52 -0.16 -1.59 16 24 C -0.12 -1.58 5.31 -26.52 -0.14 -1.72 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.10 2.24 3.14 -51.92 -0.16 2.08 16 29 H 0.11 2.35 7.36 -51.93 -0.38 1.97 16 30 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.09 1.67 8.08 -51.93 -0.42 1.25 16 32 H 0.10 1.85 7.82 -51.93 -0.41 1.44 16 33 H 0.11 2.10 6.68 -52.49 -0.35 1.75 16 34 H 0.10 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -29.94 326.55 -5.66 -35.60 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.90 Total: 6.51 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.40 Total: 5.16 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.58 Total: -33.63 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.64 Total: -33.76 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.22 Total: 15.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.94 -5.66 -35.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188149607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.860 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds