Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00132 * 2 1 4 4 O 1.20823 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00111 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47495 * 179.97438 * 5 3 2 7 7 C 1.37104 * 120.00248 * 270.00437 * 6 5 3 8 8 H 1.07995 * 119.99990 * 140.83311 * 7 6 5 9 9 C 1.38952 * 119.99610 * 320.82833 * 7 6 5 10 10 N 1.31414 * 119.99818 * 162.19988 * 9 7 6 11 11 Si 1.86797 * 120.00199 * 342.19925 * 9 7 6 12 12 H 1.48506 * 109.47177 * 95.56655 * 11 9 7 13 13 H 1.48493 * 109.47594 * 215.56987 * 11 9 7 14 14 H 1.48504 * 109.47327 * 335.56974 * 11 9 7 15 15 C 1.34783 * 119.99885 * 89.99641 * 6 5 3 16 16 O 1.21291 * 119.99873 * 5.48368 * 15 6 5 17 17 C 1.50693 * 119.99714 * 185.47917 * 15 6 5 18 18 C 1.53005 * 109.46940 * 186.32865 * 17 15 6 19 19 H 1.08994 * 109.36094 * 304.73034 * 18 17 15 20 20 C 1.50070 * 109.35452 * 64.31365 * 18 17 15 21 21 C 1.29440 * 124.07440 * 137.33919 * 20 18 17 22 22 C 1.50161 * 124.14948 * 359.76114 * 21 20 18 23 23 C 1.53022 * 110.09480 * 16.71121 * 22 21 20 24 24 C 1.53022 * 109.35969 * 184.99989 * 18 17 15 25 25 H 1.09003 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46680 * 299.99855 * 1 2 3 27 27 H 1.08999 * 109.46953 * 59.99562 * 1 2 3 28 28 H 1.09009 * 109.47259 * 59.99787 * 5 3 2 29 29 H 1.09003 * 109.46980 * 300.00320 * 5 3 2 30 30 H 0.96995 * 119.99671 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.47442 * 66.33312 * 17 15 6 32 32 H 1.08993 * 109.47571 * 306.33036 * 17 15 6 33 33 H 1.08001 * 117.96553 * 317.31346 * 20 18 17 34 34 H 1.08004 * 117.96115 * 179.55503 * 21 20 18 35 35 H 1.09002 * 109.20707 * 256.63650 * 22 21 20 36 36 H 1.08998 * 109.56589 * 137.02015 * 22 21 20 37 37 H 1.09003 * 109.64046 * 191.09481 * 23 22 21 38 38 H 1.09000 * 109.63545 * 70.68274 * 23 22 21 39 39 H 1.08999 * 109.64227 * 70.67736 * 24 18 17 40 40 H 1.09003 * 109.64407 * 310.04467 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1757 3.3368 -1.1886 8 1 3.8639 4.3654 -1.2938 9 6 4.7735 2.6793 -2.2569 10 7 4.6514 3.1581 -3.4746 11 14 5.7509 1.1149 -1.9621 12 1 4.8801 -0.0647 -2.1983 13 1 6.9073 1.0708 -2.8925 14 1 6.2421 1.0947 -0.5608 15 6 4.1733 3.3261 1.1660 16 8 4.0991 2.7203 2.2141 17 6 4.4797 4.8016 1.1684 18 6 4.8058 5.2523 2.5937 19 1 3.9835 4.9809 3.2556 20 6 6.0594 4.5696 3.0567 21 6 7.0084 5.1604 3.7093 22 6 6.9916 6.6127 4.0907 23 6 5.5705 7.1691 3.9795 24 6 4.9941 6.7708 2.6150 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.9558 0.7808 -0.8909 29 1 3.9564 0.7804 0.8891 30 1 5.0690 2.6993 -4.2202 31 1 3.6138 5.3532 0.8021 32 1 5.3348 4.9962 0.5212 33 1 6.1771 3.5198 2.8318 34 1 7.8653 4.5714 4.0010 35 1 7.6499 7.1668 3.4216 36 1 7.3444 6.7250 5.1159 37 1 5.5948 8.2556 4.0640 38 1 4.9512 6.7536 4.7744 39 1 4.0321 7.2614 2.4663 40 1 5.6851 7.0654 1.8251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188149607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = -121.228434 kcal Electronic energy + Delta-G solvation = -22826.205771 eV Core-core repulsion = 19412.874519 eV Total energy + Delta-G solvation = -3413.331253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78608 -40.74290 -39.16001 -37.59379 -36.73459 -34.04733 -33.56907 -31.83430 -30.78911 -28.52786 -27.58738 -26.53007 -23.38388 -23.01192 -22.30004 -20.91953 -19.21659 -18.92992 -18.71401 -18.29793 -17.46379 -17.24358 -17.09331 -16.68864 -16.07829 -15.75464 -15.01171 -14.90055 -14.71670 -14.65078 -14.24344 -14.01069 -13.71807 -13.50753 -13.47415 -13.14486 -13.01155 -12.96088 -12.81946 -12.39957 -12.28554 -11.95293 -11.85398 -11.71684 -11.64303 -11.34049 -11.19782 -10.94008 -10.51500 -9.91931 -9.79561 -8.54218 -6.23468 1.07148 1.15935 1.28823 1.38823 1.43849 1.49512 1.95633 2.12454 2.52284 2.92736 3.77269 3.83641 3.88174 3.91716 3.99381 4.09187 4.24526 4.27754 4.28250 4.36767 4.50862 4.59522 4.61534 4.62310 4.75741 4.88120 4.92847 4.99256 5.11689 5.14500 5.20094 5.26678 5.29687 5.48568 5.54404 5.86400 6.01895 6.10955 6.15937 6.67662 6.86536 7.25743 7.62037 8.59838 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.005857 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.893894 B = 4779.428496 C = 5653.311430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.522 6.522 5 C 0.099 3.901 6 N -0.465 5.465 7 C -0.340 4.340 8 H 0.082 0.918 9 C 0.026 3.974 10 N -0.895 5.895 11 Si 0.915 3.085 12 H -0.250 1.250 13 H -0.275 1.275 14 H -0.255 1.255 15 C 0.493 3.507 16 O -0.603 6.603 17 C -0.106 4.106 18 C -0.038 4.038 19 H 0.066 0.934 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.113 4.113 25 H 0.141 0.859 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.282 0.718 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 0.539 9.554 9.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.410 6.410 5 C -0.026 4.026 6 N -0.187 5.187 7 C -0.468 4.468 8 H 0.099 0.901 9 C -0.179 4.179 10 N -0.532 5.532 11 Si 0.739 3.261 12 H -0.176 1.176 13 H -0.201 1.201 14 H -0.179 1.179 15 C 0.285 3.715 16 O -0.488 6.488 17 C -0.145 4.145 18 C -0.057 4.057 19 H 0.084 0.916 20 C -0.169 4.169 21 C -0.181 4.181 22 C -0.123 4.123 23 C -0.153 4.153 24 C -0.150 4.150 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.783 0.522 9.850 9.895 hybrid contribution -0.085 -0.894 -0.699 1.138 sum 0.698 -0.372 9.151 9.185 Atomic orbital electron populations 1.23576 0.74776 1.05941 1.02259 1.86491 1.25252 1.32367 1.84067 1.24650 0.92856 0.81668 0.71569 1.90591 1.67259 1.37503 1.45687 1.21431 0.87463 0.88165 1.05520 1.43521 1.59744 1.08958 1.06519 1.18915 1.40402 0.99065 0.88404 0.90061 1.25943 0.96406 1.01219 0.94282 1.69795 1.41629 1.42402 0.99325 0.86282 0.79850 0.80187 0.79768 1.17570 1.20131 1.17898 1.21139 0.76879 0.91249 0.82233 1.90517 1.56362 1.69781 1.32097 1.21438 1.03392 0.90932 0.98754 1.19810 0.96155 0.95842 0.93851 0.91629 1.22027 0.95965 0.99074 0.99835 1.22257 0.98255 0.97855 0.99716 1.20508 0.97555 0.91950 1.02325 1.21594 0.96018 1.01407 0.96292 1.21661 1.01820 0.92734 0.98794 0.84056 0.92182 0.92446 0.87789 0.85527 0.90807 0.89481 0.88998 0.90451 0.87606 0.90017 0.89546 0.89493 0.92313 0.90916 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.37 -13.21 10.57 -51.37 -0.54 -13.76 16 3 C 0.45 19.93 8.02 71.24 0.57 20.50 16 4 O -0.52 -26.10 16.18 21.97 0.36 -25.75 16 5 C 0.10 4.42 4.79 85.63 0.41 4.83 16 6 N -0.47 -22.86 1.66 -639.60 -1.06 -23.92 16 7 C -0.34 -18.09 8.95 84.04 0.75 -17.33 16 8 H 0.08 4.65 7.46 -2.91 -0.02 4.62 16 9 C 0.03 1.36 5.37 84.93 0.46 1.82 16 10 N -0.90 -49.46 13.96 21.66 0.30 -49.16 16 11 Si 0.92 39.63 24.80 68.60 1.70 41.33 16 12 H -0.25 -9.98 6.75 99.48 0.67 -9.31 16 13 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.26 -10.95 7.09 99.48 0.70 -10.24 16 15 C 0.49 23.21 7.12 87.65 0.62 23.83 16 16 O -0.60 -29.59 14.08 -3.06 -0.04 -29.64 16 17 C -0.11 -4.22 3.79 29.85 0.11 -4.11 16 18 C -0.04 -1.29 2.11 -11.73 -0.02 -1.32 16 19 H 0.07 2.43 7.87 -2.39 -0.02 2.41 16 20 C -0.15 -5.16 8.44 27.04 0.23 -4.93 16 21 C -0.16 -4.48 9.80 27.07 0.27 -4.22 16 22 C -0.09 -1.81 6.13 29.69 0.18 -1.63 16 23 C -0.12 -2.46 6.00 30.73 0.18 -2.27 16 24 C -0.11 -2.95 5.31 30.73 0.16 -2.78 16 25 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.06 1.61 8.13 -2.38 -0.02 1.59 16 27 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 28 H 0.10 4.53 3.14 -2.38 -0.01 4.52 16 29 H 0.13 5.23 7.36 -2.39 -0.02 5.21 16 30 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.09 3.45 8.08 -2.39 -0.02 3.43 16 32 H 0.09 3.71 7.82 -2.39 -0.02 3.69 16 33 H 0.08 3.10 6.68 -2.91 -0.02 3.08 16 34 H 0.11 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -65.84 326.55 6.83 -59.02 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.99 Total: 27.56 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 5.12 Total: 14.31 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -0.76 Total: -73.08 kcal Atomic # 8 Polarization: -68.91 SS G_CDS: -0.23 Total: -69.14 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.70 Total: 41.33 kcal Total: -65.84 6.83 -59.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188149607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.213 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds