Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.36532 * 127.14463 * 90.02239 * 3 2 1 5 5 S 1.76208 * 126.48189 * 359.93342 * 4 3 2 6 6 C 1.80995 * 99.99756 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47352 * 304.99468 * 6 5 4 8 8 C 1.53002 * 109.47707 * 64.99969 * 6 5 4 9 9 C 1.53008 * 109.47103 * 184.99794 * 6 5 4 10 10 C 1.50706 * 109.46854 * 64.99444 * 9 6 5 11 11 H 1.08002 * 120.00270 * 0.02562 * 10 9 6 12 12 C 1.37878 * 119.99939 * 179.97438 * 10 9 6 13 13 N 1.31506 * 119.99758 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99908 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47344 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46853 * 120.00579 * 14 12 10 17 17 H 1.48493 * 109.47090 * 240.00450 * 14 12 10 18 18 N 1.31285 * 107.03530 * 179.97438 * 4 3 2 19 19 N 1.28525 * 109.85385 * 359.97438 * 18 4 3 20 20 C 1.30298 * 110.07969 * 359.76254 * 19 18 4 21 21 C 1.50698 * 126.34158 * 180.27675 * 20 19 18 22 22 C 1.52997 * 117.50170 * 8.86983 * 21 20 19 23 23 C 1.53002 * 117.49870 * 300.20704 * 21 20 19 24 24 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 29 29 H 1.08999 * 109.46629 * 300.00176 * 8 6 5 30 30 H 1.08996 * 109.46764 * 59.99971 * 8 6 5 31 31 H 1.08996 * 109.47149 * 179.97438 * 8 6 5 32 32 H 1.08994 * 109.47066 * 184.99654 * 9 6 5 33 33 H 1.08995 * 109.47164 * 305.00128 * 9 6 5 34 34 H 0.97001 * 119.99774 * 179.97438 * 13 12 10 35 35 H 1.09007 * 115.54940 * 154.53967 * 21 20 19 36 36 H 1.09000 * 117.49458 * 359.97438 * 22 21 20 37 37 H 1.08999 * 117.50180 * 145.02223 * 22 21 20 38 38 H 1.08993 * 117.49767 * 214.98096 * 23 21 20 39 39 H 1.08996 * 117.49507 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2936 2.1584 1.0883 5 16 2.1271 1.6904 2.7789 6 6 2.6695 3.2186 3.5829 7 1 3.6594 3.4904 3.2164 8 6 1.6811 4.3418 3.2631 9 6 2.7270 3.0057 5.0970 10 6 3.7885 1.9861 5.4209 11 1 4.3647 1.5354 4.6264 12 6 4.0247 1.6295 6.7317 13 7 3.3233 2.1786 7.6991 14 14 5.3409 0.3662 7.1332 15 1 5.9827 -0.0965 5.8766 16 1 6.3655 0.9820 8.0143 17 1 4.7211 -0.7905 7.8281 18 7 2.7048 3.3206 0.6369 19 7 2.7033 3.3150 -0.6483 20 6 2.2994 2.1577 -1.0902 21 6 2.1641 1.7511 -2.5350 22 6 2.7255 2.7036 -3.5925 23 6 1.2117 2.5663 -3.4120 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.6402 4.4935 2.1844 30 1 0.6913 4.0701 3.6296 31 1 2.0076 5.2620 3.7476 32 1 2.9673 3.9488 5.5876 33 1 1.7600 2.6481 5.4506 34 1 3.4892 1.9275 8.6212 35 1 2.2378 0.6814 -2.7312 36 1 3.1924 3.6246 -3.2432 37 1 3.1682 2.2607 -4.4846 38 1 0.6591 2.0330 -4.1855 39 1 0.6826 3.3964 -2.9439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188268917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = 85.246063 kcal Electronic energy + Delta-G solvation = -19706.653597 eV Core-core repulsion = 16777.321373 eV Total energy + Delta-G solvation = -2929.332224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.65088 -37.31649 -35.69379 -34.54472 -32.10598 -30.58528 -30.18533 -27.42731 -24.63846 -23.78677 -23.30232 -22.70035 -22.14228 -20.59993 -19.86047 -17.54264 -16.51884 -16.36122 -15.93492 -15.52362 -14.91010 -14.62823 -14.51089 -14.29818 -13.30377 -12.97155 -12.66496 -12.58340 -12.38896 -11.85316 -11.77384 -11.69120 -11.51242 -11.37978 -11.22644 -11.04013 -10.80370 -10.76127 -10.64184 -10.49525 -10.21246 -10.09845 -9.57588 -9.45460 -9.27368 -9.12797 -8.41943 -7.04021 -6.06393 -4.08684 1.64077 1.81438 2.70718 2.92968 2.96571 3.29343 3.37210 3.42311 3.70395 4.15397 4.40199 4.42750 4.60723 4.64639 4.74292 4.82021 5.00560 5.31021 5.32718 5.37272 5.40213 5.45573 5.61675 5.77310 5.79627 5.86774 5.90196 5.95493 6.04751 6.17467 6.21917 6.59038 6.64534 6.84377 6.89381 7.50103 7.54583 7.90975 8.27373 8.91937 8.96652 9.55834 11.04691 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.004225 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.546219 B = 6626.260385 C = 6879.082725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 N -0.465 5.465 4 C 0.167 3.833 5 S 0.011 5.989 6 C -0.053 4.053 7 H 0.091 0.909 8 C -0.147 4.147 9 C 0.037 3.963 10 C -0.522 4.522 11 H 0.064 0.936 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.297 5.297 19 N -0.288 5.288 20 C 0.195 3.805 21 C -0.081 4.081 22 C -0.150 4.150 23 C -0.160 4.160 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 -4.530 -19.741 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.159 5.159 4 C -0.206 4.206 5 S 0.241 5.759 6 C -0.182 4.182 7 H 0.109 0.891 8 C -0.206 4.206 9 C -0.002 4.002 10 C -0.561 4.561 11 H 0.082 0.918 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.141 5.141 19 N -0.128 5.128 20 C -0.074 4.074 21 C -0.101 4.101 22 C -0.188 4.188 23 C -0.198 4.198 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.203 -4.144 -19.034 20.444 hybrid contribution 0.718 -0.983 -0.093 1.221 sum -5.486 -5.128 -19.127 20.549 Atomic orbital electron populations 1.22140 0.93592 1.03363 1.03548 1.21886 0.96132 0.78982 1.04971 1.46390 1.50864 1.13754 1.04912 1.27596 1.04022 0.91603 0.97409 1.85941 1.82410 1.24198 0.83366 1.23637 1.01394 0.91243 1.01939 0.89113 1.22121 0.98490 0.97866 1.02150 1.19109 0.98202 0.98424 0.84473 1.21306 1.19182 1.23085 0.92522 0.91812 1.24982 0.96271 0.96457 0.96401 1.69961 1.40446 1.43038 0.99774 0.86534 0.81738 0.81333 0.78490 1.19560 1.20979 1.20976 1.74690 1.20723 1.16521 1.02176 1.73820 1.17891 1.17262 1.03777 1.23770 1.04256 0.89215 0.90156 1.19988 1.08559 0.98003 0.83599 1.23022 0.96162 1.01269 0.98345 1.23066 0.93311 1.02246 1.01180 0.91930 0.90223 0.91115 0.88126 0.88867 0.91721 0.92717 0.91959 0.94094 0.95490 0.92916 0.86266 0.87207 0.88006 0.88030 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.10 1.09 6.61 -4.04 -0.03 1.06 16 3 N -0.46 -6.94 2.81 -113.53 -0.32 -7.26 16 4 C 0.17 3.07 7.75 -88.34 -0.69 2.39 16 5 S 0.01 0.22 20.56 -107.50 -2.21 -1.99 16 6 C -0.05 -1.13 2.29 -26.73 -0.06 -1.19 16 7 H 0.09 2.05 8.14 -51.92 -0.42 1.62 16 8 C -0.15 -2.78 9.01 37.16 0.33 -2.45 16 9 C 0.04 0.92 4.44 -27.88 -0.12 0.80 16 10 C -0.52 -14.28 8.53 -34.44 -0.29 -14.57 16 11 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 N -0.30 -5.97 9.74 30.68 0.30 -5.67 16 19 N -0.29 -5.28 11.79 33.00 0.39 -4.89 16 20 C 0.20 2.91 7.59 -153.99 -1.17 1.74 16 21 C -0.08 -0.82 5.99 -91.77 -0.55 -1.37 16 22 C -0.15 -1.35 10.15 -26.69 -0.27 -1.63 16 23 C -0.16 -1.36 10.24 -26.69 -0.27 -1.63 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.10 7.86 -51.93 -0.41 0.69 16 28 H 0.09 0.72 7.43 -51.93 -0.39 0.34 16 29 H 0.06 1.23 5.91 -51.93 -0.31 0.93 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.12 0.93 7.53 -51.92 -0.39 0.54 16 36 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -31.96 339.47 -9.93 -41.89 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.09 Total: -1.77 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.84 Total: -16.41 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.11 Total: -43.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.21 Total: -1.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.96 -9.93 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188268917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.136 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds