Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47186 * 59.99756 * 9 8 6 11 11 C 1.52993 * 109.47284 * 179.97438 * 9 8 6 12 12 O 1.42905 * 109.46902 * 300.00105 * 9 8 6 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 15 15 C 1.46509 * 125.97450 * 359.96761 * 14 2 1 16 16 C 1.50698 * 109.47025 * 89.99735 * 15 14 2 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99698 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00426 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46895 * 89.99951 * 20 18 16 22 22 H 1.48496 * 109.46922 * 209.99736 * 20 18 16 23 23 H 1.48503 * 109.46783 * 329.99868 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 28 28 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 29 29 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 30 30 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 31 31 H 1.08993 * 109.47436 * 59.99939 * 10 9 8 32 32 H 1.09003 * 109.47385 * 180.02562 * 10 9 8 33 33 H 1.09005 * 109.47022 * 299.99810 * 10 9 8 34 34 H 1.09003 * 109.47280 * 59.99780 * 11 9 8 35 35 H 1.09003 * 109.47365 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.47340 * 299.99837 * 11 9 8 37 37 H 0.96703 * 113.99554 * 299.99709 * 12 9 8 38 38 H 1.08994 * 109.46750 * 210.00045 * 15 14 2 39 39 H 1.09004 * 109.46474 * 329.99737 * 15 14 2 40 40 H 0.96998 * 119.99850 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 6 4.5929 5.4462 1.2757 11 6 6.6684 6.0613 0.0288 12 8 4.6467 5.4386 -1.1404 13 7 3.6337 -0.6577 -0.0036 14 7 2.3017 -1.0909 -0.0059 15 6 1.8500 -2.4847 -0.0128 16 6 1.6945 -2.9553 -1.4359 17 1 1.9108 -2.2836 -2.2535 18 6 1.2770 -4.2437 -1.6941 19 7 1.1407 -4.6543 -2.9361 20 14 0.9035 -5.4056 -0.2799 21 1 -0.5276 -5.2823 0.0972 22 1 1.1865 -6.8019 -0.6987 23 1 1.7546 -5.0562 0.8857 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0004 28 1 5.6584 1.0776 0.0049 29 1 6.4547 3.4893 0.9060 30 1 6.4532 3.4983 -0.8739 31 1 5.1886 5.2381 2.1644 32 1 4.2856 6.4920 1.2806 33 1 3.7090 4.8083 1.2731 34 1 7.2636 5.8616 -0.8622 35 1 6.3615 7.1072 0.0343 36 1 7.2639 5.8531 0.9177 37 1 5.1138 5.2823 -1.9726 38 1 2.5849 -3.1072 0.4976 39 1 0.8916 -2.5584 0.5012 40 1 0.8466 -5.5606 -3.1177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281749042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -10.619127 kcal Electronic energy + Delta-G solvation = -22027.638553 eV Core-core repulsion = 18651.396431 eV Total energy + Delta-G solvation = -3376.242122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84292 -39.79270 -37.65137 -34.81212 -33.33108 -32.84287 -31.57153 -31.12372 -28.83671 -27.48993 -26.89336 -26.37674 -22.86971 -21.70968 -20.42898 -19.76987 -19.22254 -17.13405 -17.09397 -16.53229 -15.94530 -15.78782 -15.27854 -14.90260 -14.55711 -14.40109 -13.84872 -13.82328 -13.20640 -12.69721 -12.59312 -12.49319 -12.38171 -12.35482 -12.24091 -12.03474 -11.92036 -11.76240 -11.52764 -11.13861 -10.93803 -10.78611 -10.54055 -10.25399 -9.94039 -9.92034 -9.56585 -9.38084 -8.79172 -7.98239 -7.46832 -6.26952 -4.30177 2.33525 2.72810 2.87431 3.14225 3.22542 3.23161 3.68312 3.76267 4.10081 4.20943 4.38005 4.55433 4.73225 4.94176 5.01273 5.11265 5.20710 5.33116 5.40514 5.59217 5.64822 5.69965 5.79979 5.88536 5.91529 6.03525 6.19397 6.33799 6.40714 6.46796 6.58403 6.62176 6.77455 7.28403 7.42766 7.58965 7.61292 7.86463 8.30311 8.32216 8.58945 8.78806 9.28218 10.85563 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038300 B = 0.003384 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.901330 B = 8272.746076 C = 8439.668940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.094 3.906 3 C -0.286 4.286 4 C 0.268 3.732 5 N -0.636 5.636 6 C 0.517 3.483 7 O -0.492 6.492 8 C -0.167 4.167 9 C 0.145 3.855 10 C -0.154 4.154 11 C -0.178 4.178 12 O -0.542 6.542 13 N -0.320 5.320 14 N -0.318 5.318 15 C 0.232 3.768 16 C -0.541 4.541 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.887 5.887 20 Si 0.873 3.127 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.263 1.263 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.162 0.838 28 H 0.409 0.591 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.369 0.631 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.158 17.281 8.018 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.317 4.317 4 C 0.015 3.985 5 N -0.284 5.284 6 C 0.302 3.698 7 O -0.364 6.364 8 C -0.207 4.207 9 C 0.104 3.896 10 C -0.211 4.211 11 C -0.236 4.236 12 O -0.347 6.347 13 N -0.151 5.151 14 N -0.100 5.100 15 C 0.113 3.887 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.125 4.125 19 N -0.523 5.523 20 Si 0.699 3.301 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.179 0.821 28 H 0.243 0.757 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.215 0.785 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.539 16.483 8.352 20.356 hybrid contribution 0.500 -0.599 0.048 0.781 sum 9.039 15.885 8.400 20.115 Atomic orbital electron populations 1.20407 0.87859 1.04199 1.02438 1.21070 0.94919 0.87002 1.00695 1.21282 0.89707 0.99857 1.20858 1.19023 0.87457 0.89510 1.02530 1.42610 1.07320 1.05278 1.73197 1.20464 0.91542 0.81153 0.76616 1.90632 1.26621 1.73138 1.46041 1.22478 0.96721 0.96242 1.05282 1.20886 0.90769 0.89880 0.88059 1.22012 1.01984 1.03318 0.93797 1.22521 0.97673 1.00920 1.02496 1.86731 1.42747 1.90228 1.14964 1.77245 0.99409 1.08741 1.29665 1.48503 1.01278 1.06984 1.53217 1.19983 0.95258 0.73797 0.99672 1.21188 1.47361 0.99028 0.90370 0.90116 1.24816 0.94482 0.97460 0.95786 1.69878 1.45640 1.18346 1.18481 0.86899 0.79454 0.80990 0.82792 1.19585 1.20501 1.18801 0.91101 0.89867 0.90337 0.82098 0.75663 0.87868 0.88420 0.92022 0.92240 0.88829 0.92274 0.91397 0.91511 0.78457 0.93261 0.93682 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -5.85 9.52 -39.83 -0.38 -6.23 16 4 C 0.27 5.38 8.11 -154.38 -1.25 4.13 16 5 N -0.64 -9.48 5.45 -11.13 -0.06 -9.54 16 6 C 0.52 7.00 7.36 -10.98 -0.08 6.92 16 7 O -0.49 -8.33 10.09 -12.72 -0.13 -8.46 16 8 C -0.17 -1.40 4.95 -27.88 -0.14 -1.54 16 9 C 0.15 1.33 0.98 -90.62 -0.09 1.24 16 10 C -0.15 -1.60 8.52 37.16 0.32 -1.28 16 11 C -0.18 -1.13 8.81 37.15 0.33 -0.80 16 12 O -0.54 -6.14 11.88 -53.50 -0.64 -6.78 16 13 N -0.32 -7.30 12.59 31.44 0.40 -6.91 16 14 N -0.32 -7.42 3.59 -58.32 -0.21 -7.63 16 15 C 0.23 5.61 4.88 -5.19 -0.03 5.58 16 16 C -0.54 -15.21 9.94 -34.44 -0.34 -15.55 16 17 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 20 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.16 3.22 5.92 -52.49 -0.31 2.91 16 28 H 0.41 4.81 8.82 -40.82 -0.36 4.45 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.26 5.51 -51.93 -0.29 0.98 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.37 2.81 9.05 45.56 0.41 3.22 16 38 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 39 H 0.05 1.00 7.08 -51.93 -0.37 0.63 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -35.00 332.06 -6.58 -41.58 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.08 Total: 8.09 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.97 Total: -5.22 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.90 Total: -49.67 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.76 Total: -15.24 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.00 -6.58 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281749042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds