Wall clock time and date at job start Tue Mar 31 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 117.00027 * 2 1 4 4 C 1.38671 * 120.04721 * 0.02562 * 3 2 1 5 5 C 1.38232 * 120.08842 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.90659 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47041 * 89.99842 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47378 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47429 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99769 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47112 * 90.00199 * 14 12 10 16 16 H 1.48499 * 109.47134 * 210.00310 * 14 12 10 17 17 H 1.48498 * 109.47011 * 329.99931 * 14 12 10 18 18 C 1.38229 * 120.18101 * 0.24627 * 5 4 3 19 19 C 1.38661 * 120.08576 * 359.45706 * 18 5 4 20 20 O 1.35998 * 120.04155 * 180.29818 * 19 18 5 21 21 C 1.42897 * 117.00435 * 0.26668 * 20 19 18 22 22 C 1.38978 * 119.91415 * 0.56267 * 19 18 5 23 23 O 1.36089 * 120.09182 * 179.68391 * 22 19 18 24 24 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47023 * 300.00051 * 1 2 3 26 26 H 1.08999 * 109.47061 * 59.99957 * 1 2 3 27 27 H 1.07999 * 119.95256 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.46924 * 329.99754 * 6 5 4 29 29 H 1.08995 * 109.46962 * 209.99908 * 6 5 4 30 30 H 1.00904 * 110.99913 * 303.95016 * 7 6 5 31 31 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 32 32 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 33 33 H 1.09004 * 109.46862 * 299.99897 * 9 8 7 34 34 H 1.09004 * 109.46998 * 59.99419 * 9 8 7 35 35 H 0.97000 * 120.00540 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.95384 * 179.72639 * 18 5 4 37 37 H 1.08995 * 109.47583 * 180.02562 * 21 20 19 38 38 H 1.09009 * 109.46952 * 300.00604 * 21 20 19 39 39 H 1.09003 * 109.46896 * 59.99853 * 21 20 19 40 40 H 0.96699 * 114.00228 * 270.02846 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9188 3.6074 0.0000 6 6 1.0950 4.8694 0.0000 7 7 0.8279 5.2797 1.3850 8 6 0.0257 6.5098 1.4242 9 6 -0.2309 6.9052 2.8797 10 6 -1.0533 8.1673 2.9199 11 1 -1.3624 8.6400 1.9993 12 6 -1.4120 8.7182 4.1318 13 7 -1.0360 8.1424 5.2528 14 14 -2.4319 10.2824 4.1817 15 1 -3.8750 9.9321 4.1954 16 1 -2.0978 11.0524 5.4067 17 1 -2.1338 11.1061 2.9826 18 6 3.2989 3.6851 -0.0062 19 6 4.0604 2.5263 -0.0006 20 8 5.4181 2.6038 -0.0005 21 6 5.9933 3.9119 -0.0006 22 6 3.4343 1.2855 -0.0005 23 8 4.1781 0.1459 -0.0014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2136 2.3187 0.0014 28 1 0.1510 4.6870 -0.5135 29 1 1.6415 5.6599 -0.5142 30 1 0.3789 4.5382 1.9016 31 1 0.5652 7.3116 0.9200 32 1 -0.9258 6.3392 0.9204 33 1 -0.7702 6.1035 3.3842 34 1 0.7208 7.0758 3.3830 35 1 -1.2880 8.5300 6.1056 36 1 3.7847 4.6496 -0.0111 37 1 7.0803 3.8309 -0.0010 38 1 5.6691 4.4513 -0.8906 39 1 5.6691 4.4513 0.8894 40 1 4.3928 -0.1830 -0.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289954652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:36 Heat of formation + Delta-G solvation = -97.330807 kcal Electronic energy + Delta-G solvation = -21498.912457 eV Core-core repulsion = 18086.617483 eV Total energy + Delta-G solvation = -3412.294974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82729 -39.10607 -37.29452 -37.19183 -35.26788 -32.97209 -30.90990 -29.74057 -28.90435 -27.97318 -26.99258 -25.11682 -23.37894 -22.07737 -21.47492 -20.59012 -18.83818 -17.69503 -17.19728 -16.61301 -16.36756 -16.23851 -15.64132 -15.33413 -15.16433 -14.75796 -14.47958 -14.16410 -13.95690 -13.79310 -13.12456 -12.74246 -12.45282 -12.25557 -12.11093 -11.89081 -11.78261 -11.66380 -11.13863 -11.03311 -10.94398 -10.71771 -10.70784 -10.52677 -10.04193 -9.43769 -9.18581 -8.38136 -8.29006 -8.25109 -7.88324 -6.01847 -4.04963 1.11401 1.28521 2.69526 3.30191 3.36574 3.39560 3.46927 3.50573 4.10677 4.41851 4.59080 4.78996 4.90314 4.96726 4.99427 5.01713 5.07065 5.08999 5.14271 5.32613 5.34024 5.38657 5.55493 5.60266 5.72344 5.95713 6.06157 6.26188 6.28829 6.31583 6.52416 6.92122 7.05222 7.12628 7.38979 7.68363 7.72828 7.76718 7.89114 8.04763 8.39990 9.02286 9.58982 11.09516 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.003226 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.773949 B = 8677.995842 C = 9541.628257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.140 3.860 4 C -0.226 4.226 5 C -0.001 4.001 6 C 0.094 3.906 7 N -0.685 5.685 8 C 0.066 3.934 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.208 4.208 19 C 0.140 3.860 20 O -0.307 6.307 21 C 0.024 3.976 22 C 0.032 3.968 23 O -0.474 6.474 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.338 0.662 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.504 -14.296 -14.722 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.094 3.906 4 C -0.245 4.245 5 C -0.002 4.002 6 C -0.035 4.035 7 N -0.316 5.316 8 C -0.062 4.062 9 C -0.013 4.013 10 C -0.562 4.562 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.227 4.227 19 C 0.094 3.906 20 O -0.220 6.220 21 C -0.070 4.070 22 C -0.014 4.014 23 O -0.281 6.281 24 H 0.119 0.881 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 9.280 -14.216 -13.843 21.905 hybrid contribution -1.727 0.907 -0.602 2.042 sum 7.553 -13.309 -14.445 21.044 Atomic orbital electron populations 1.23122 0.78113 1.04005 1.01753 1.86109 1.21431 1.26004 1.88382 1.18916 0.90673 0.84852 0.96172 1.20980 1.00158 0.91197 1.12191 1.19497 0.93131 0.94212 0.93311 1.20925 0.97055 0.93267 0.92296 1.60639 1.52883 1.07810 1.10257 1.22203 0.92972 0.89459 1.01580 1.19072 0.97234 0.95971 0.88980 1.21161 1.33275 1.09454 0.92281 0.92739 1.25007 0.96194 0.97438 0.95715 1.69972 1.45901 1.39941 0.97340 0.86581 0.80442 0.83351 0.77538 1.20698 1.21167 1.19871 1.20973 0.93964 0.97295 1.10510 1.18969 0.82952 0.92714 0.96005 1.86103 1.16660 1.30871 1.88322 1.23138 0.99034 0.82917 1.01958 1.16653 0.86126 0.84506 1.14160 1.84974 1.71661 1.38911 1.32582 0.88123 0.92201 0.92555 0.84982 0.94592 0.90200 0.84406 0.92188 0.96518 0.96787 0.95579 0.92944 0.84528 0.88161 0.92510 0.91965 0.76925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.77 10.28 -34.29 -0.35 -4.13 16 3 C 0.14 1.87 6.70 -39.15 -0.26 1.61 16 4 C -0.23 -2.87 8.69 -39.42 -0.34 -3.21 16 5 C 0.00 -0.01 5.39 -104.63 -0.56 -0.57 16 6 C 0.09 1.32 5.81 -4.97 -0.03 1.29 16 7 N -0.68 -12.07 6.49 -115.06 -0.75 -12.82 16 8 C 0.07 1.35 5.62 -3.82 -0.02 1.33 16 9 C 0.02 0.64 5.23 -27.89 -0.15 0.50 16 10 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.21 -2.74 8.68 -39.43 -0.34 -3.08 16 19 C 0.14 1.90 6.70 -39.15 -0.26 1.63 16 20 O -0.31 -3.86 10.28 -34.32 -0.35 -4.21 16 21 C 0.02 0.22 9.81 101.05 0.99 1.21 16 22 C 0.03 0.45 6.73 -39.03 -0.26 0.18 16 23 O -0.47 -6.23 13.07 -45.28 -0.59 -6.83 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.13 1.45 6.29 -52.49 -0.33 1.12 16 28 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.34 5.90 8.72 -39.29 -0.34 5.56 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.14 1.63 6.29 -52.49 -0.33 1.30 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.43 7.65 -51.92 -0.40 0.03 16 39 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 40 H 0.38 3.18 9.07 45.56 0.41 3.59 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -33.55 340.10 -6.96 -40.51 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.10 Total: 3.41 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.66 Total: -11.41 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.01 Total: -38.99 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.30 Total: -15.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.55 -6.96 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289954652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.819 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds