Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47069 * 304.99600 * 5 4 3 7 7 N 1.46498 * 109.47465 * 65.00143 * 5 4 3 8 8 C 1.34775 * 119.99962 * 204.99918 * 7 5 4 9 9 O 1.21279 * 120.00095 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00075 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.47410 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47091 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99630 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99638 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00197 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47507 * 89.99846 * 16 14 12 18 18 H 1.48506 * 109.46843 * 209.99767 * 16 14 12 19 19 H 1.48496 * 109.46793 * 329.99408 * 16 14 12 20 20 C 1.50703 * 109.46801 * 184.99876 * 5 4 3 21 21 C 1.34522 * 125.78737 * 99.99807 * 20 5 4 22 22 C 1.41379 * 106.83917 * 179.97438 * 21 20 5 23 23 C 1.34515 * 106.84226 * 0.02562 * 22 21 20 24 24 O 1.34295 * 125.79307 * 279.69118 * 20 5 4 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 27 27 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 28 28 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 29 29 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 30 30 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 31 31 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 32 32 H 0.96998 * 119.99659 * 24.99845 * 7 5 4 33 33 H 1.09001 * 109.47614 * 300.00351 * 10 8 7 34 34 H 1.09001 * 109.46875 * 59.99997 * 10 8 7 35 35 H 1.08997 * 109.47143 * 300.00196 * 11 10 8 36 36 H 1.09001 * 109.47248 * 60.00049 * 11 10 8 37 37 H 0.97004 * 119.99632 * 180.02562 * 15 14 12 38 38 H 1.08000 * 126.57674 * 0.03783 * 21 20 5 39 39 H 1.08000 * 126.57923 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.79372 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7675 3.1542 -0.8406 7 7 3.8227 3.2656 1.2531 8 6 3.8021 4.6123 1.3012 9 8 4.0606 5.2585 0.3080 10 6 3.4569 5.3151 2.5887 11 6 3.5048 6.8290 2.3721 12 6 3.1601 7.5318 3.6599 13 1 2.9295 6.9563 4.5442 14 6 3.1392 8.9095 3.7090 15 7 2.8379 9.5229 4.8328 16 14 3.5375 9.9049 2.1793 17 1 2.2894 10.1609 1.4164 18 1 4.1493 11.1986 2.5760 19 1 4.4904 9.1466 1.3296 20 6 5.6552 2.4655 -0.1219 21 6 6.3670 2.6316 -1.2512 22 6 7.7251 2.4330 -0.9123 23 6 7.7621 2.1568 0.4036 24 8 6.5060 2.1835 0.8783 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 3.8575 0.6435 -0.8891 31 1 3.8567 0.6438 0.8909 32 1 3.6156 2.7486 2.0473 33 1 2.4544 5.0251 2.9035 34 1 4.1750 5.0350 3.3594 35 1 4.5070 7.1194 2.0571 36 1 2.7864 7.1088 1.6016 37 1 2.8229 10.4922 4.8673 38 1 5.9760 2.8718 -2.2289 39 1 8.5706 2.4910 -1.5818 40 1 8.6514 1.9534 0.9816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291966592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -80.176794 kcal Electronic energy + Delta-G solvation = -21824.456921 eV Core-core repulsion = 18412.905801 eV Total energy + Delta-G solvation = -3411.551120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59445 -39.51755 -38.18664 -35.86807 -33.49172 -33.02064 -32.00669 -31.06388 -29.84770 -27.15950 -26.20426 -24.84717 -22.18903 -21.89274 -21.38191 -20.25065 -19.75905 -17.70835 -17.30046 -16.71687 -16.42264 -16.08760 -15.86139 -15.58769 -15.30108 -14.95639 -14.19549 -14.10788 -13.63186 -13.29745 -13.04774 -12.83630 -12.72450 -12.56817 -12.47044 -12.15212 -11.85142 -11.58256 -11.42256 -11.35161 -10.96927 -10.17907 -10.05847 -9.95585 -9.92010 -9.79347 -9.32751 -9.19039 -9.13596 -8.51139 -8.48853 -6.03427 -4.02177 1.68266 2.57606 2.83068 3.11208 3.30580 3.37317 3.44054 3.53339 3.55277 4.50582 4.51409 4.68925 4.72539 4.88349 4.99903 5.04518 5.09580 5.14977 5.21028 5.24692 5.32099 5.40694 5.44758 5.66017 5.73507 5.77590 5.88250 6.03543 6.06408 6.08463 6.37727 6.52415 6.67421 6.85144 7.12449 7.35047 7.42759 7.67222 7.78444 8.48376 8.59091 8.99595 9.59644 11.09410 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.004476 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.970771 B = 6254.475843 C = 7745.598570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.060 3.940 4 C -0.122 4.122 5 C 0.232 3.768 6 H 0.117 0.883 7 N -0.737 5.737 8 C 0.513 3.487 9 O -0.534 6.534 10 C -0.121 4.121 11 C 0.002 3.998 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.017 4.017 21 C -0.200 4.200 22 C -0.214 4.214 23 C -0.043 4.043 24 O -0.167 6.167 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -21.098 -10.952 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.160 4.160 5 C 0.126 3.874 6 H 0.134 0.866 7 N -0.391 5.391 8 C 0.302 3.698 9 O -0.409 6.409 10 C -0.161 4.161 11 C -0.036 4.036 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.069 4.069 21 C -0.220 4.220 22 C -0.234 4.234 23 C -0.111 4.111 24 O -0.063 6.063 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.238 0.762 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.461 -20.635 -11.289 23.649 hybrid contribution 0.167 0.674 -0.538 0.879 sum 2.628 -19.961 -11.827 23.350 Atomic orbital electron populations 1.22753 0.80722 1.02725 1.00310 1.87835 1.19955 1.27899 1.95524 1.22509 0.93134 0.84753 1.01220 1.21790 0.93763 0.95437 1.05052 1.19271 0.84323 0.93306 0.90510 0.86553 1.46300 1.72956 1.07315 1.12541 1.21625 0.75102 0.81096 0.91996 1.90663 1.47526 1.65365 1.37309 1.21676 1.02629 0.99150 0.92675 1.19368 0.97757 0.88933 0.97546 1.21109 1.47433 0.91770 0.95970 0.90924 1.24968 0.94410 0.97862 0.95951 1.69918 1.49235 1.09097 1.25987 0.86803 0.79464 0.79464 0.83876 1.20235 1.21422 1.18546 1.22796 0.92852 1.04814 0.86390 1.21558 0.93204 1.07752 0.99442 1.21797 0.97607 1.07804 0.96148 1.24036 0.85795 1.06221 0.95035 1.84006 1.16183 1.68881 1.37215 0.89626 0.93774 0.93991 0.92435 0.92846 0.89155 0.89891 0.76238 0.89515 0.89481 0.95852 0.96269 0.92719 0.83543 0.83570 0.78246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.02 10.70 -35.23 -0.38 -4.40 16 3 C 0.06 0.57 5.83 37.16 0.22 0.79 16 4 C -0.12 -1.14 5.10 -26.73 -0.14 -1.28 16 5 C 0.23 2.77 2.42 -69.08 -0.17 2.60 16 6 H 0.12 1.48 7.57 -51.93 -0.39 1.08 16 7 N -0.74 -9.70 4.51 -54.93 -0.25 -9.94 16 8 C 0.51 9.18 7.79 -10.99 -0.09 9.09 16 9 O -0.53 -11.61 15.64 5.56 0.09 -11.52 16 10 C -0.12 -2.34 5.64 -27.88 -0.16 -2.49 16 11 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 12 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 2.06 5.47 -17.81 -0.10 1.96 16 15 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 16 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 20 C -0.02 -0.22 6.12 -35.62 -0.22 -0.44 16 21 C -0.20 -2.55 10.80 -39.70 -0.43 -2.98 16 22 C -0.21 -2.48 10.91 -39.70 -0.43 -2.91 16 23 C -0.04 -0.49 12.09 29.42 0.36 -0.13 16 24 O -0.17 -2.28 10.64 5.73 0.06 -2.22 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.54 7.75 -51.93 -0.40 0.13 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 36 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -35.53 344.06 -5.80 -41.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.15 Total: 0.72 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.47 Total: -9.86 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.53 Total: -37.22 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.23 Total: -18.14 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.53 -5.80 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291966592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.847 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds