Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99865 * 2 1 4 4 C 1.52999 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47557 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46809 * 55.00208 * 5 4 3 7 7 N 1.46504 * 109.46976 * 295.00561 * 5 4 3 8 8 C 1.34771 * 120.00259 * 154.99836 * 7 5 4 9 9 O 1.21284 * 119.99801 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00142 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.46779 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46779 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00376 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00175 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99896 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46731 * 90.00437 * 16 14 12 18 18 H 1.48503 * 109.46844 * 210.00074 * 16 14 12 19 19 H 1.48499 * 109.46920 * 330.00250 * 16 14 12 20 20 C 1.50696 * 109.47388 * 174.99952 * 5 4 3 21 21 C 1.34512 * 125.79261 * 259.99868 * 20 5 4 22 22 C 1.41379 * 106.84086 * 180.02562 * 21 20 5 23 23 C 1.34512 * 106.84332 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.41872 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47160 * 59.99832 * 1 2 3 26 26 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46982 * 299.99708 * 1 2 3 28 28 H 1.09001 * 109.46810 * 60.00722 * 3 2 1 29 29 H 1.09001 * 109.47672 * 300.00181 * 3 2 1 30 30 H 1.09000 * 109.46986 * 59.99995 * 4 3 2 31 31 H 1.09008 * 109.47273 * 300.00430 * 4 3 2 32 32 H 0.97003 * 119.99908 * 334.99523 * 7 5 4 33 33 H 1.08997 * 109.47109 * 299.99913 * 10 8 7 34 34 H 1.08996 * 109.46611 * 60.00566 * 10 8 7 35 35 H 1.08997 * 109.47430 * 299.99963 * 11 10 8 36 36 H 1.08999 * 109.47356 * 60.01176 * 11 10 8 37 37 H 0.96999 * 119.99799 * 179.97438 * 15 14 12 38 38 H 1.07996 * 126.57559 * 359.97438 * 21 20 5 39 39 H 1.08007 * 126.57604 * 180.02562 * 22 21 20 40 40 H 1.08004 * 125.79431 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1578 2.5825 0.0013 6 1 3.7667 3.1539 0.8431 7 7 3.8236 3.2664 -1.2505 8 6 3.8030 4.6131 -1.2979 9 8 4.0607 5.2589 -0.3042 10 6 3.4598 5.3166 -2.5857 11 6 3.5073 6.8303 -2.3682 12 6 3.1647 7.5338 -3.6562 13 1 2.9356 6.9588 -4.5412 14 6 3.1438 8.9115 -3.7047 15 7 3.4233 9.6118 -2.6272 16 14 2.7184 9.7836 -5.3011 17 1 1.2518 10.0067 -5.3675 18 1 3.4209 11.0909 -5.3533 19 1 3.1444 8.9463 -6.4512 20 6 5.6550 2.4657 0.1258 21 6 6.3658 2.6313 1.2557 22 6 7.7242 2.4329 0.9178 23 6 7.7624 2.1584 -0.3984 24 8 6.5062 2.1794 -0.8729 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8574 0.6437 -0.8891 31 1 3.8568 0.6439 0.8909 32 1 3.6171 2.7499 -2.0452 33 1 4.1792 5.0370 -3.3554 34 1 2.4579 5.0267 -2.9021 35 1 2.7877 7.1096 -1.5987 36 1 4.5091 7.1206 -2.0516 37 1 3.4090 10.5811 -2.6614 38 1 5.9740 2.8708 2.2331 39 1 8.5692 2.4906 1.5881 40 1 8.6523 1.9548 -0.9757 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291966596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = -82.934477 kcal Electronic energy + Delta-G solvation = -21752.520270 eV Core-core repulsion = 18340.849568 eV Total energy + Delta-G solvation = -3411.670702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.52767 -39.38989 -38.13167 -35.76698 -33.45344 -32.95422 -31.91592 -30.75176 -29.75821 -27.06121 -25.89661 -24.76660 -22.21309 -21.92236 -21.47780 -20.20562 -19.72049 -17.63618 -17.00932 -16.66303 -16.29215 -16.00201 -15.62900 -15.52542 -15.21371 -14.85171 -14.43544 -14.09736 -13.51501 -13.20066 -13.01529 -12.77263 -12.66945 -12.26539 -12.18192 -12.06994 -11.77335 -11.52516 -11.30223 -11.16237 -10.93059 -10.59883 -9.96375 -9.91554 -9.85650 -9.67750 -9.22546 -9.07892 -9.00793 -8.41946 -8.32036 -5.96060 -4.00501 1.74934 2.64291 2.91203 3.23897 3.33258 3.37346 3.40002 3.42700 3.60122 4.47547 4.57740 4.74447 4.78717 4.93612 5.05731 5.09858 5.12853 5.20755 5.27628 5.30737 5.38939 5.43154 5.56413 5.72574 5.79921 5.83805 5.95726 6.10631 6.21211 6.23848 6.46199 6.61617 6.87865 6.88834 7.19167 7.74012 7.80362 7.85879 8.06925 8.38244 8.72031 9.07908 9.63075 11.14890 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.004127 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.129857 B = 6783.412188 C = 8338.185364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.061 3.939 4 C -0.122 4.122 5 C 0.232 3.768 6 H 0.117 0.883 7 N -0.739 5.739 8 C 0.512 3.488 9 O -0.528 6.528 10 C -0.129 4.129 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.015 4.015 21 C -0.200 4.200 22 C -0.214 4.214 23 C -0.044 4.044 24 O -0.168 6.168 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 -20.952 5.815 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.160 4.160 5 C 0.126 3.874 6 H 0.134 0.866 7 N -0.393 5.393 8 C 0.301 3.699 9 O -0.402 6.402 10 C -0.169 4.169 11 C 0.000 4.000 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.067 4.067 21 C -0.220 4.220 22 C -0.233 4.233 23 C -0.112 4.112 24 O -0.063 6.063 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.089 -20.477 6.307 21.454 hybrid contribution -0.211 0.612 -0.977 1.172 sum 0.878 -19.865 5.330 20.587 Atomic orbital electron populations 1.22748 0.80777 1.02673 1.00302 1.87834 1.19915 1.27966 1.95528 1.22514 0.93166 0.84679 1.01249 1.21789 0.93732 0.95522 1.04966 1.19258 0.84281 0.93215 0.90674 0.86564 1.46345 1.73267 1.07383 1.12350 1.21653 0.75186 0.80926 0.92130 1.90681 1.47053 1.65277 1.37181 1.21873 1.01819 1.00726 0.92483 1.18899 0.98518 0.85640 0.96978 1.21219 1.47575 0.91478 0.96273 0.92605 1.25022 0.95362 0.97683 0.96276 1.70001 1.48660 1.06279 1.27892 0.86594 0.78416 0.79122 0.83836 1.20671 1.21217 1.19879 1.22811 0.92882 1.04651 0.86386 1.21557 0.93206 1.07759 0.99452 1.21794 0.97606 1.07808 0.96114 1.24018 0.85794 1.06370 0.95025 1.84003 1.16143 1.68812 1.37383 0.93826 0.89666 0.93971 0.92812 0.92435 0.89967 0.89210 0.76445 0.90141 0.90159 0.95815 0.95837 0.92956 0.83526 0.83585 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.15 10.70 -35.23 -0.38 -4.53 16 3 C 0.06 0.60 5.83 37.16 0.22 0.81 16 4 C -0.12 -1.21 5.10 -26.73 -0.14 -1.34 16 5 C 0.23 2.93 2.42 -69.08 -0.17 2.76 16 6 H 0.12 1.58 7.57 -51.93 -0.39 1.18 16 7 N -0.74 -10.30 4.51 -54.93 -0.25 -10.55 16 8 C 0.51 9.75 7.79 -10.99 -0.09 9.67 16 9 O -0.53 -12.29 15.64 5.55 0.09 -12.21 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 11 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 12 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.02 -0.22 6.12 -35.63 -0.22 -0.43 16 21 C -0.20 -2.69 10.80 -39.70 -0.43 -3.12 16 22 C -0.21 -2.60 10.91 -39.70 -0.43 -3.04 16 23 C -0.04 -0.52 12.09 29.41 0.36 -0.17 16 24 O -0.17 -2.38 10.64 5.71 0.06 -2.32 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.20 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -35.53 347.67 -6.17 -41.70 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.18 Total: 1.84 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.47 Total: -9.08 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.49 Total: -37.32 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.23 Total: -19.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.53 -6.17 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291966596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.235 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds