Wall clock time and date at job start Tue Mar 31 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99747 * 2 1 4 4 N 1.46900 * 109.46979 * 124.96017 * 3 2 1 5 5 C 1.46896 * 111.00326 * 65.47976 * 4 3 2 6 6 C 1.50708 * 109.47115 * 66.04334 * 5 4 3 7 7 H 1.07993 * 119.99850 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99766 * 180.02562 * 6 5 4 9 9 N 1.31504 * 120.00372 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99479 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47237 * 90.00234 * 10 8 6 12 12 H 1.48504 * 109.47081 * 210.00018 * 10 8 6 13 13 H 1.48496 * 109.47300 * 330.00238 * 10 8 6 14 14 C 1.46897 * 111.00313 * 301.52198 * 4 3 2 15 15 H 1.09003 * 109.46634 * 63.40302 * 14 4 3 16 16 C 1.53000 * 109.47663 * 183.40291 * 14 4 3 17 17 C 1.50702 * 109.47218 * 303.40650 * 14 4 3 18 18 C 1.38417 * 120.02221 * 134.45104 * 17 14 4 19 19 F 1.35100 * 120.01777 * 0.04857 * 18 17 14 20 20 C 1.38479 * 119.97173 * 180.02562 * 18 17 14 21 21 C 1.38209 * 120.02500 * 0.02562 * 20 18 17 22 22 C 1.38210 * 120.04797 * 359.97438 * 21 20 18 23 23 C 1.38419 * 120.02444 * 314.47542 * 17 14 4 24 24 F 1.35101 * 120.01118 * 0.02562 * 23 17 14 25 25 H 1.08002 * 119.99845 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00344 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00444 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46975 * 4.96314 * 3 2 1 29 29 H 1.08998 * 109.47127 * 244.95702 * 3 2 1 30 30 H 1.08998 * 109.47574 * 186.04637 * 5 4 3 31 31 H 1.08999 * 109.46893 * 306.04852 * 5 4 3 32 32 H 0.97000 * 120.00161 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47035 * 300.00921 * 16 14 4 34 34 H 1.09001 * 109.46661 * 59.99978 * 16 14 4 35 35 H 1.08995 * 109.47594 * 180.02562 * 16 14 4 36 36 H 1.08001 * 119.98781 * 179.97438 * 20 18 17 37 37 H 1.08000 * 119.97184 * 179.72366 * 21 20 18 38 38 H 1.08005 * 119.98262 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9955 1.3324 1.1351 5 6 4.0411 0.3119 0.9824 6 6 4.9081 0.6542 -0.2018 7 1 4.7031 1.5413 -0.7826 8 6 5.9629 -0.1653 -0.5437 9 7 6.2121 -1.2458 0.1633 10 14 7.0371 0.2586 -2.0120 11 1 8.1680 1.1126 -1.5679 12 1 7.5672 -0.9908 -2.6147 13 1 6.2301 0.9911 -3.0206 14 6 2.2805 1.1673 2.4076 15 1 1.8063 0.1862 2.4332 16 6 3.2705 1.2856 3.5681 17 6 1.2273 2.2377 2.5346 18 6 -0.0495 1.9067 2.9542 19 9 -0.3521 0.6238 3.2509 20 6 -1.0166 2.8910 3.0700 21 6 -0.7075 4.2034 2.7664 22 6 0.5672 4.5350 2.3475 23 6 1.5360 3.5525 2.2314 24 9 2.7816 3.8768 1.8209 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3584 2.1317 0.0889 29 1 2.6218 1.4024 -0.9310 30 1 4.6530 0.2809 1.8839 31 1 3.5778 -0.6619 0.8241 32 1 6.9540 -1.8225 -0.0775 33 1 4.0323 0.5115 3.4762 34 1 3.7447 2.2668 3.5425 35 1 2.7400 1.1627 4.5123 36 1 -2.0131 2.6329 3.3969 37 1 -1.4636 4.9697 2.8528 38 1 0.8075 5.5609 2.1101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292191808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:15 Heat of formation + Delta-G solvation = -32.514574 kcal Electronic energy + Delta-G solvation = -22972.733295 eV Core-core repulsion = 19452.161448 eV Total energy + Delta-G solvation = -3520.571846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.84702 -48.44325 -39.13746 -37.37129 -33.35100 -32.89749 -31.07373 -30.16942 -28.97945 -26.99413 -24.39500 -23.78558 -22.71908 -21.67945 -20.24061 -18.66652 -17.85183 -17.05927 -16.53938 -15.77402 -15.66146 -15.33877 -15.02730 -14.92380 -14.69731 -14.13484 -14.01893 -13.83069 -13.68643 -13.05043 -12.55429 -12.33982 -12.02834 -11.87959 -11.74654 -11.41340 -11.29809 -11.22886 -11.02161 -10.85077 -10.71841 -10.55968 -10.22706 -9.74338 -9.29083 -8.84370 -8.67890 -8.58408 -8.39361 -7.23076 -6.01046 -4.01208 1.06022 1.11227 2.76898 3.33692 3.39630 3.42913 3.45519 4.08851 4.42780 4.57020 4.64687 4.70238 4.89809 5.10569 5.20191 5.35034 5.46904 5.67624 5.70476 5.79406 5.88879 5.96741 6.04351 6.07134 6.11200 6.19089 6.21955 6.43377 6.47882 6.63513 6.71432 6.90752 7.09226 7.13300 7.37550 7.38768 7.81497 8.09497 8.18565 8.54256 9.05686 9.62268 11.09823 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.005677 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.290147 B = 4931.180140 C = 5244.411319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.086 3.914 4 N -0.515 5.515 5 C 0.187 3.813 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.118 3.882 15 H 0.051 0.949 16 C -0.141 4.141 17 C -0.139 4.139 18 C 0.131 3.869 19 F -0.130 7.130 20 C -0.176 4.176 21 C -0.071 4.071 22 C -0.178 4.178 23 C 0.159 3.841 24 F -0.105 7.105 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.038 0.962 31 H -0.004 1.004 32 H 0.260 0.740 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 8.692 5.927 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.181 4.181 3 C -0.042 4.042 4 N -0.238 5.238 5 C 0.063 3.937 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.010 3.990 15 H 0.069 0.931 16 C -0.199 4.199 17 C -0.142 4.142 18 C 0.111 3.889 19 F -0.109 7.109 20 C -0.195 4.195 21 C -0.089 4.089 22 C -0.198 4.198 23 C 0.139 3.861 24 F -0.083 7.083 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.725 8.962 5.945 17.437 hybrid contribution 0.327 -0.961 -0.844 1.320 sum -13.398 8.002 5.100 16.418 Atomic orbital electron populations 1.23603 0.95904 1.00606 1.04522 1.23881 0.96214 1.01406 0.96633 1.21297 0.93898 0.92266 0.96733 1.62552 1.11237 1.51773 0.98228 1.19859 0.88218 0.87564 0.98070 1.21128 1.12136 1.08755 1.12109 0.91897 1.24951 0.97536 0.95027 0.96994 1.69948 1.30144 1.13996 1.39804 0.86527 0.80727 0.77606 0.82718 1.20667 1.21422 1.19906 1.20376 0.91729 0.93682 0.93262 0.93088 1.21873 0.98971 1.03678 0.95332 1.20135 0.94922 0.95437 1.03661 1.17252 0.92727 0.79078 0.99809 1.91506 1.93377 1.35467 1.90518 1.21074 0.99619 0.92797 1.06006 1.20721 0.95800 0.95506 0.96854 1.21228 0.93466 0.99762 1.05297 1.17200 0.81073 0.91613 0.96245 1.91638 1.37436 1.92623 1.86608 0.89440 0.89602 0.87071 0.92777 0.88818 0.94398 0.98611 0.92988 0.90729 0.91749 0.93329 0.84613 0.84535 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.36 14.32 29.02 0.42 -2.94 16 2 C -0.16 -3.04 7.62 -36.02 -0.27 -3.31 16 3 C 0.09 1.71 5.22 -4.97 -0.03 1.68 16 4 N -0.51 -10.98 3.25 -230.91 -0.75 -11.73 16 5 C 0.19 4.76 4.38 -4.97 -0.02 4.74 16 6 C -0.50 -13.91 8.44 -34.44 -0.29 -14.20 16 7 H 0.06 1.74 7.14 -52.49 -0.37 1.37 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.12 2.21 1.68 -68.87 -0.12 2.10 16 15 H 0.05 1.01 6.29 -51.93 -0.33 0.68 16 16 C -0.14 -2.52 8.89 37.16 0.33 -2.19 16 17 C -0.14 -2.24 3.64 -104.49 -0.38 -2.62 16 18 C 0.13 1.88 7.25 -39.43 -0.29 1.59 16 19 F -0.13 -1.99 16.26 2.25 0.04 -1.96 16 20 C -0.18 -1.96 10.03 -39.50 -0.40 -2.36 16 21 C -0.07 -0.70 10.04 -39.60 -0.40 -1.09 16 22 C -0.18 -2.09 10.02 -39.51 -0.40 -2.49 16 23 C 0.16 2.43 6.11 -39.43 -0.24 2.19 16 24 F -0.11 -1.89 15.27 2.25 0.03 -1.85 16 25 H 0.09 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.09 1.30 7.84 -52.49 -0.41 0.89 16 27 H 0.11 2.31 6.82 -52.49 -0.36 1.95 16 28 H 0.05 1.00 6.10 -51.93 -0.32 0.68 16 29 H 0.09 2.03 6.73 -51.93 -0.35 1.68 16 30 H 0.04 1.02 5.81 -51.93 -0.30 0.72 16 31 H 0.00 -0.10 6.40 -51.93 -0.33 -0.44 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.44 6.19 -51.93 -0.32 1.12 16 34 H 0.06 1.16 7.58 -51.93 -0.39 0.77 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -29.47 317.59 -7.09 -36.55 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.73 Total: 0.70 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -2.18 Total: -17.43 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.01 Total: -37.47 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.47 -7.09 -36.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.038 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds