Wall clock time and date at job start Tue Mar 31 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00311 * 2 1 4 4 N 1.46902 * 109.46798 * 123.12329 * 3 2 1 5 5 C 1.46892 * 111.00085 * 64.51511 * 4 3 2 6 6 C 1.50706 * 109.47291 * 66.04506 * 5 4 3 7 7 H 1.07993 * 119.99552 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99718 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99606 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00518 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47085 * 90.00019 * 10 8 6 12 12 H 1.48495 * 109.47298 * 210.00076 * 10 8 6 13 13 H 1.48500 * 109.47193 * 330.00241 * 10 8 6 14 14 C 1.46899 * 111.00206 * 300.55486 * 4 3 2 15 15 C 1.50692 * 109.47690 * 288.25623 * 14 4 3 16 16 C 1.33326 * 125.95884 * 90.57326 * 15 14 4 17 17 N 1.32121 * 114.58400 * 180.02562 * 16 15 14 18 18 C 1.29689 * 116.86424 * 359.97438 * 17 16 15 19 19 N 1.38607 * 124.94487 * 179.97438 * 18 17 16 20 20 C 1.46502 * 120.00449 * 0.03050 * 19 18 17 21 21 C 1.46498 * 119.99661 * 180.02562 * 19 18 17 22 22 S 1.70962 * 110.10100 * 0.24864 * 18 17 16 23 23 H 1.07991 * 120.00502 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99709 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99709 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.46948 * 3.12467 * 3 2 1 27 27 H 1.08995 * 109.47513 * 243.12587 * 3 2 1 28 28 H 1.08999 * 109.47450 * 186.04406 * 5 4 3 29 29 H 1.09004 * 109.47410 * 306.04264 * 5 4 3 30 30 H 0.96996 * 119.99600 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47309 * 168.24671 * 14 4 3 32 32 H 1.09004 * 109.46678 * 48.25763 * 14 4 3 33 33 H 1.08001 * 122.70672 * 0.02562 * 16 15 14 34 34 H 1.08996 * 109.46825 * 270.00062 * 20 19 18 35 35 H 1.09000 * 109.47162 * 149.99809 * 20 19 18 36 36 H 1.09007 * 109.46943 * 29.99880 * 20 19 18 37 37 H 1.09000 * 109.47402 * 270.00427 * 21 19 18 38 38 H 1.08999 * 109.47093 * 30.00653 * 21 19 18 39 39 H 1.09002 * 109.46983 * 150.00622 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9638 1.3506 1.1600 5 6 3.9991 0.3130 1.0639 6 6 4.9036 0.6123 -0.1039 7 1 4.7266 1.4857 -0.7138 8 6 5.9562 -0.2296 -0.3940 9 7 6.7452 0.0314 -1.4134 10 14 6.2618 -1.7408 0.6607 11 1 5.5102 -2.8938 0.1031 12 1 7.7134 -2.0534 0.6688 13 1 5.8046 -1.4765 2.0486 14 6 2.2112 1.2287 2.4156 15 6 1.4412 2.4998 2.6652 16 6 0.1962 2.7531 2.2609 17 7 -0.2615 3.9441 2.6039 18 6 0.5400 4.7076 3.2797 19 7 0.2339 5.9845 3.7238 20 6 -1.0803 6.5646 3.4365 21 6 1.2247 6.7538 4.4805 22 16 2.0315 3.9126 3.5365 23 1 -0.5400 -0.9352 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3566 2.1328 0.0560 27 1 2.6475 1.3875 -0.9166 28 1 4.5851 0.2982 1.9828 29 1 3.5273 -0.6588 0.9183 30 1 7.4855 -0.5611 -1.6177 31 1 2.9040 1.0559 3.2392 32 1 1.5169 0.3916 2.3432 33 1 -0.3908 2.0422 1.6984 34 1 -1.0412 7.1009 2.4884 35 1 -1.3546 7.2555 4.2337 36 1 -1.8228 5.7690 3.3737 37 1 1.1055 6.5522 5.5450 38 1 2.2273 6.4641 4.1658 39 1 1.0785 7.8177 4.2936 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292880410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:38 Heat of formation + Delta-G solvation = 90.836227 kcal Electronic energy + Delta-G solvation = -19722.152122 eV Core-core repulsion = 16793.062306 eV Total energy + Delta-G solvation = -2929.089817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56118 -37.72068 -36.43727 -32.94122 -32.37121 -30.57147 -28.51673 -27.70934 -26.82932 -25.31364 -23.26815 -22.43526 -21.00102 -19.34781 -18.96205 -17.85409 -16.79887 -16.07681 -15.65544 -15.24958 -14.97787 -14.70055 -14.18568 -14.11595 -13.95223 -13.41452 -12.97510 -12.84233 -12.79655 -12.47325 -12.40217 -12.19311 -11.81454 -11.62646 -11.04882 -10.89132 -10.75302 -10.62331 -10.26547 -9.94840 -9.75913 -9.41281 -9.32041 -8.96502 -8.83320 -8.57847 -7.53589 -7.31574 -6.05219 -4.02367 1.23663 1.36384 2.08740 2.65353 2.84851 3.20481 3.27079 3.35532 3.36675 4.41253 4.61891 4.94283 4.98942 5.06520 5.06766 5.26672 5.36717 5.37093 5.41817 5.42873 5.57253 5.62657 5.68788 5.98196 6.03351 6.12460 6.33250 6.34742 6.61299 6.63687 6.81114 6.92221 7.01722 7.03785 7.14658 7.59625 7.87460 8.01176 8.12281 8.64880 9.03751 9.56237 11.07938 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.004418 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.186111 B = 6336.344054 C = 6961.615812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.084 3.916 4 N -0.514 5.514 5 C 0.159 3.841 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.128 3.872 15 C -0.223 4.223 16 C 0.068 3.932 17 N -0.548 5.548 18 C 0.294 3.706 19 N -0.596 5.596 20 C 0.107 3.893 21 C 0.095 3.905 22 S 0.113 5.887 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.028 0.972 29 H -0.010 1.010 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.168 0.832 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 9.606 11.922 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.182 4.182 3 C -0.044 4.044 4 N -0.237 5.237 5 C 0.033 3.967 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.003 4.003 15 C -0.347 4.347 16 C -0.082 4.082 17 N -0.273 5.273 18 C -0.075 4.075 19 N -0.318 5.318 20 C -0.038 4.038 21 C -0.048 4.048 22 S 0.363 5.637 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.046 0.954 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.185 0.815 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.047 10.637 12.266 20.829 hybrid contribution -0.651 -2.256 -0.128 2.351 sum -13.698 8.382 12.137 20.130 Atomic orbital electron populations 1.23726 0.95922 1.00948 1.04322 1.23877 0.96285 1.01323 0.96670 1.21348 0.94454 0.92478 0.96117 1.62230 1.12009 1.50128 0.99293 1.20248 0.89834 0.88203 0.98379 1.21004 1.10717 1.11185 1.11595 0.90105 1.24879 0.95771 0.97581 0.94991 1.69893 1.17661 1.38202 1.28134 0.86898 0.77614 0.83845 0.81605 1.20373 1.21172 1.19165 1.20361 0.95442 0.90054 0.94439 1.25378 0.98390 1.00889 1.10012 1.21277 0.93472 0.92591 1.00825 1.66350 1.35111 1.05815 1.20050 1.23526 0.94520 0.91436 0.97976 1.45573 1.15984 1.10973 1.59257 1.21573 0.83475 0.98688 1.00085 1.21753 0.91544 0.96064 0.95449 1.83872 1.14291 1.09872 1.55697 0.89300 0.89000 0.87294 0.91796 0.88447 0.95426 0.99251 0.92679 0.90592 0.92972 0.81471 0.93287 0.91671 0.90511 0.92559 0.91140 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.03 13.86 29.01 0.40 -2.63 16 2 C -0.16 -2.78 7.40 -36.03 -0.27 -3.04 16 3 C 0.08 1.61 5.44 -4.98 -0.03 1.58 16 4 N -0.51 -10.58 4.65 -238.97 -1.11 -11.69 16 5 C 0.16 3.75 3.63 -4.98 -0.02 3.73 16 6 C -0.51 -14.11 9.01 -34.44 -0.31 -14.42 16 7 H 0.08 2.47 7.37 -52.49 -0.39 2.08 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 10 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.13 2.21 5.35 -4.98 -0.03 2.18 16 15 C -0.22 -3.62 5.63 -36.03 -0.20 -3.82 16 16 C 0.07 1.07 10.05 -19.14 -0.19 0.88 16 17 N -0.55 -8.70 9.82 -15.21 -0.15 -8.85 16 18 C 0.29 4.24 7.74 -87.68 -0.68 3.56 16 19 N -0.60 -6.74 3.38 -191.88 -0.65 -7.39 16 20 C 0.11 0.97 10.56 59.85 0.63 1.60 16 21 C 0.10 0.76 10.41 59.85 0.62 1.38 16 22 S 0.11 1.65 21.68 -107.50 -2.33 -0.68 16 23 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 24 H 0.09 1.23 6.66 -52.48 -0.35 0.88 16 25 H 0.11 2.01 6.84 -52.48 -0.36 1.65 16 26 H 0.06 1.15 6.25 -51.93 -0.32 0.83 16 27 H 0.10 2.12 6.75 -51.93 -0.35 1.77 16 28 H 0.03 0.66 6.92 -51.93 -0.36 0.30 16 29 H -0.01 -0.23 5.80 -51.93 -0.30 -0.54 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.08 1.30 7.81 -51.93 -0.41 0.89 16 32 H 0.05 0.86 6.69 -51.93 -0.35 0.52 16 33 H 0.17 2.43 6.35 -52.49 -0.33 2.10 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.08 0.80 7.62 -51.93 -0.40 0.40 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.60 7.04 -51.93 -0.37 0.24 16 39 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -31.52 327.14 -8.92 -40.44 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.55 Total: 0.39 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.16 Total: -7.12 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.14 Total: -54.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.33 Total: -0.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.52 -8.92 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292880410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.274 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds