Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46572 * 2 1 4 4 C 1.36931 * 119.99946 * 83.58681 * 3 2 1 5 5 H 1.07999 * 120.00003 * 170.86856 * 4 3 2 6 6 C 1.38813 * 120.00278 * 350.87326 * 4 3 2 7 7 N 1.31623 * 120.00004 * 3.62501 * 6 4 3 8 8 Si 1.86800 * 120.00258 * 183.63182 * 6 4 3 9 9 H 1.48502 * 109.46838 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47289 * 119.99419 * 8 6 4 11 11 H 1.48500 * 109.47108 * 239.99682 * 8 6 4 12 12 C 1.46501 * 119.99698 * 263.58647 * 3 2 1 13 13 H 1.09003 * 109.46787 * 173.42817 * 12 3 2 14 14 C 1.52994 * 109.47306 * 53.42334 * 12 3 2 15 15 C 1.50707 * 109.47008 * 293.42051 * 12 3 2 16 16 C 1.35168 * 125.60875 * 225.60229 * 15 12 3 17 17 C 1.40307 * 107.12661 * 180.02562 * 16 15 12 18 18 C 1.50696 * 126.64734 * 179.97438 * 17 16 15 19 19 C 1.36637 * 106.70082 * 359.97438 * 17 16 15 20 20 C 1.46477 * 125.99349 * 180.02562 * 19 17 16 21 21 O 1.21620 * 119.99815 * 0.02562 * 20 19 17 22 22 O 1.34893 * 119.99763 * 179.97438 * 20 19 17 23 23 C 1.45200 * 117.00038 * 179.97438 * 22 20 19 24 24 O 1.33910 * 125.60691 * 45.29401 * 15 12 3 25 25 H 1.09001 * 109.47063 * 56.87248 * 1 2 3 26 26 H 1.09004 * 109.46500 * 176.87000 * 1 2 3 27 27 H 1.08993 * 109.47224 * 296.87114 * 1 2 3 28 28 H 1.08995 * 109.47253 * 119.99943 * 2 1 3 29 29 H 1.08997 * 109.47282 * 240.00261 * 2 1 3 30 30 H 0.96999 * 120.00140 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47248 * 299.99568 * 14 12 3 32 32 H 1.09001 * 109.47266 * 60.00096 * 14 12 3 33 33 H 1.09002 * 109.47081 * 180.02562 * 14 12 3 34 34 H 1.08008 * 126.43597 * 0.02562 * 16 15 12 35 35 H 1.09004 * 109.47146 * 90.02546 * 18 17 16 36 36 H 1.09000 * 109.47375 * 210.02523 * 18 17 16 37 37 H 1.09000 * 109.47737 * 330.02638 * 18 17 16 38 38 H 1.09006 * 109.46868 * 60.00149 * 23 22 20 39 39 H 1.08994 * 109.47383 * 180.02562 * 23 22 20 40 40 H 1.09005 * 109.47023 * 300.00699 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1215 2.0710 1.1784 5 1 2.6165 3.0306 1.2009 6 6 1.5902 1.5367 2.3442 7 7 1.0505 0.3362 2.3317 8 14 1.6408 2.5213 3.9308 9 1 2.2956 3.8305 3.6802 10 1 0.2563 2.7453 4.4189 11 1 2.4114 1.7710 4.9547 12 6 2.3960 2.0247 -1.2608 13 1 2.6203 3.0758 -1.0794 14 6 1.2394 1.9144 -2.2562 15 6 3.6138 1.3418 -1.8281 16 6 4.7028 1.9649 -2.3310 17 6 5.5946 0.9654 -2.7488 18 6 6.9485 1.1733 -3.3769 19 6 4.9974 -0.2328 -2.4757 20 6 5.5631 -1.5573 -2.7427 21 8 6.6627 -1.6572 -3.2527 22 8 4.8650 -2.6660 -2.4219 23 6 5.4871 -3.9447 -2.7155 24 8 3.7975 0.0180 -1.9115 25 1 -0.3633 0.5616 -0.8606 26 1 -0.3632 -1.0262 -0.0561 27 1 -0.3633 0.4645 0.9166 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 0.6789 -0.0370 3.1463 31 1 1.0151 0.8632 -2.4377 32 1 0.3585 2.4083 -1.8459 33 1 1.5206 2.3927 -3.1945 34 1 4.8575 3.0317 -2.3986 35 1 7.7079 1.2196 -2.5963 36 1 7.1685 0.3438 -4.0490 37 1 6.9486 2.1067 -3.9397 38 1 6.4287 -4.0240 -2.1720 39 1 4.8214 -4.7515 -2.4093 40 1 5.6783 -4.0184 -3.7861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298255849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = -37.498616 kcal Electronic energy + Delta-G solvation = -23015.346997 eV Core-core repulsion = 19605.646542 eV Total energy + Delta-G solvation = -3409.700455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31579 -39.98713 -36.71700 -36.41418 -33.76202 -32.84610 -30.37419 -29.23247 -28.56232 -28.19755 -26.78889 -24.30995 -23.16226 -21.72122 -21.20007 -20.11757 -18.87243 -17.93395 -16.91822 -16.78433 -16.53888 -15.54099 -15.21715 -14.72347 -13.98960 -13.85302 -13.38543 -13.27014 -13.10388 -12.92985 -12.78616 -12.39321 -12.21617 -12.13896 -12.01629 -11.90425 -11.48307 -11.32060 -10.87545 -10.77153 -10.76767 -10.62206 -10.47429 -10.39559 -9.95193 -9.62831 -9.44649 -9.29511 -8.39333 -8.12058 -6.97144 -5.64721 -3.20403 1.17515 2.59716 2.68126 3.12311 3.33414 3.41594 3.42110 3.43396 4.40520 4.90544 5.01211 5.07398 5.10413 5.17310 5.32533 5.43036 5.49488 5.63032 5.76780 5.79984 5.84796 5.96554 5.98739 6.14199 6.26053 6.29315 6.45119 6.49951 6.75177 6.77277 6.81088 7.04896 7.17821 7.32324 7.37851 7.61215 7.86156 7.95235 8.19984 8.45384 9.21883 9.77724 10.19414 11.23409 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.005338 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.639754 B = 5244.633000 C = 5607.092379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.161 3.839 3 N -0.584 5.584 4 C -0.249 4.249 5 H 0.076 0.924 6 C -0.005 4.005 7 N -0.900 5.900 8 Si 0.913 3.087 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.235 3.765 13 H 0.098 0.902 14 C -0.158 4.158 15 C 0.074 3.926 16 C -0.255 4.255 17 C -0.064 4.064 18 C -0.094 4.094 19 C -0.110 4.110 20 C 0.558 3.442 21 O -0.503 6.503 22 O -0.346 6.346 23 C 0.038 3.962 24 O -0.131 6.131 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.009 0.991 30 H 0.250 0.750 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.153 0.847 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -1.688 -10.520 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 N -0.303 5.303 4 C -0.378 4.378 5 H 0.094 0.906 6 C -0.201 4.201 7 N -0.548 5.548 8 Si 0.743 3.257 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.124 3.876 13 H 0.116 0.884 14 C -0.217 4.217 15 C 0.016 3.984 16 C -0.274 4.274 17 C -0.067 4.067 18 C -0.150 4.150 19 C -0.159 4.159 20 C 0.405 3.595 21 O -0.394 6.394 22 O -0.262 6.262 23 C -0.056 4.056 24 O -0.025 6.025 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.171 0.829 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.979 -2.113 -10.369 12.155 hybrid contribution 0.206 0.383 0.804 0.914 sum 6.185 -1.730 -9.565 11.522 Atomic orbital electron populations 1.22556 0.99073 0.97562 1.01115 1.21170 0.92503 0.83373 0.99212 1.44376 1.73577 1.11916 1.00427 1.19438 1.30968 1.01670 0.85676 0.90574 1.24857 0.99804 0.97142 0.98269 1.70204 1.43561 1.15089 1.25933 0.86042 0.77252 0.79089 0.83300 1.20511 1.21620 1.21796 1.19265 0.86683 0.94695 0.86987 0.88388 1.22361 0.99090 1.02389 0.97899 1.25288 0.99657 0.79711 0.93742 1.21406 0.95009 1.00371 1.10636 1.20509 0.97352 0.90668 0.98137 1.20419 0.91348 1.02783 1.00462 1.20338 0.89979 0.91769 1.13838 1.19249 0.82430 0.83013 0.74832 1.90851 1.19799 1.86694 1.42047 1.86729 1.48086 1.15125 1.76270 1.23286 0.99201 0.81588 1.01547 1.84303 1.31632 1.25686 1.60891 0.97066 0.96531 0.89472 0.87694 0.97266 0.93888 0.92317 0.91369 0.93423 0.82942 0.90857 0.90060 0.91374 0.91815 0.87913 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.35 37.16 0.35 -3.02 16 2 C 0.16 3.94 4.68 -4.04 -0.02 3.92 16 3 N -0.58 -13.94 2.43 -166.98 -0.41 -14.35 16 4 C -0.25 -6.44 9.75 -15.06 -0.15 -6.59 16 5 H 0.08 1.90 7.71 -52.49 -0.40 1.50 16 6 C 0.00 -0.13 5.27 -17.43 -0.09 -0.22 16 7 N -0.90 -24.50 7.23 55.49 0.40 -24.10 16 8 Si 0.91 21.14 29.56 -169.99 -5.02 16.12 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 C 0.23 4.59 3.15 -69.08 -0.22 4.37 16 13 H 0.10 1.78 7.79 -51.93 -0.40 1.38 16 14 C -0.16 -2.73 8.00 37.15 0.30 -2.43 16 15 C 0.07 1.42 6.03 -35.40 -0.21 1.21 16 16 C -0.25 -4.26 10.71 -39.90 -0.43 -4.69 16 17 C -0.06 -1.08 6.20 -104.43 -0.65 -1.73 16 18 C -0.09 -1.26 9.81 36.00 0.35 -0.90 16 19 C -0.11 -2.05 7.18 -36.84 -0.26 -2.32 16 20 C 0.56 9.82 7.93 34.05 0.27 10.09 16 21 O -0.50 -8.78 14.53 -19.36 -0.28 -9.07 16 22 O -0.35 -5.71 10.58 -42.47 -0.45 -6.16 16 23 C 0.04 0.43 10.57 101.05 1.07 1.49 16 24 O -0.13 -2.71 8.67 4.74 0.04 -2.67 16 25 H 0.01 0.23 6.11 -51.93 -0.32 -0.09 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.27 5.90 -51.93 -0.31 1.96 16 28 H 0.11 2.92 5.80 -51.93 -0.30 2.62 16 29 H 0.01 0.22 5.84 -51.93 -0.30 -0.08 16 30 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.06 1.07 6.70 -51.93 -0.35 0.72 16 32 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.15 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.13 6.45 -51.93 -0.33 0.79 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -29.19 326.46 -6.13 -35.32 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.64 Total: 0.79 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.31 Total: -0.80 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.00 Total: -38.45 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.69 Total: -17.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.19 -6.13 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298255849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.175 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds