Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47206 * 2 1 4 4 C 1.50692 * 109.46912 * 120.00530 * 2 1 3 5 5 H 1.08002 * 120.00454 * 119.99818 * 4 2 1 6 6 C 1.37877 * 120.00261 * 299.99567 * 4 2 1 7 7 N 1.31512 * 119.99606 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00457 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46764 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47229 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.46969 * 240.00340 * 8 6 4 12 12 N 1.46902 * 109.46988 * 240.00353 * 2 1 3 13 13 C 1.46893 * 111.00039 * 182.93355 * 12 2 1 14 14 C 1.46905 * 110.99889 * 58.97824 * 12 2 1 15 15 C 1.50700 * 109.46787 * 193.82035 * 14 12 2 16 16 C 1.32600 * 119.99923 * 126.31102 * 15 14 12 17 17 C 1.47773 * 119.99866 * 7.40285 * 16 15 14 18 18 C 1.39549 * 120.12697 * 40.63559 * 17 16 15 19 19 C 1.37905 * 119.90401 * 179.97438 * 18 17 16 20 20 C 1.38618 * 120.17067 * 0.02562 * 19 18 17 21 21 F 1.35102 * 119.87251 * 179.97438 * 20 19 18 22 22 C 1.38500 * 120.25840 * 0.02562 * 20 19 18 23 23 C 1.38184 * 120.09456 * 359.69991 * 22 20 19 24 24 F 1.35101 * 120.08803 * 180.27744 * 23 22 20 25 25 H 1.08995 * 109.47504 * 173.33572 * 1 2 3 26 26 H 1.08998 * 109.46665 * 293.34036 * 1 2 3 27 27 H 1.09004 * 109.47033 * 53.33224 * 1 2 3 28 28 H 0.97007 * 119.99991 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47482 * 296.04517 * 13 12 2 30 30 H 1.08998 * 109.47510 * 56.04508 * 13 12 2 31 31 H 1.09004 * 109.47003 * 176.04462 * 13 12 2 32 32 H 1.09001 * 109.46850 * 73.82160 * 14 12 2 33 33 H 1.09000 * 109.46873 * 313.82090 * 14 12 2 34 34 H 1.07995 * 120.00298 * 306.03329 * 15 14 12 35 35 H 1.07997 * 120.00483 * 187.40685 * 16 15 14 36 36 H 1.08001 * 120.05177 * 359.95686 * 18 17 16 37 37 H 1.07999 * 119.91418 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.95230 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.1472 -2.2867 3.6036 10 1 3.1473 -0.1862 4.8160 11 1 1.1677 -1.5869 4.8163 12 7 2.0197 -0.6924 -1.1995 13 6 3.4864 -0.7731 -1.1989 14 6 1.5287 -0.0405 -2.4210 15 6 1.7562 -0.9492 -3.6015 16 6 0.7457 -1.2640 -4.4002 17 6 -0.5632 -0.5988 -4.2330 18 6 -0.6243 0.7682 -3.9591 19 6 -1.8482 1.3844 -3.8044 20 6 -3.0178 0.6493 -3.9198 21 9 -4.2137 1.2590 -3.7667 22 6 -2.9652 -0.7080 -4.1905 23 6 -1.7448 -1.3353 -4.3531 24 9 -1.6938 -2.6581 -4.6227 25 1 -0.3634 -1.0206 -0.1193 26 1 -0.3632 0.4072 0.9436 27 1 -0.3633 0.6137 -0.8243 28 1 0.7082 1.1607 3.4845 29 1 3.9056 0.2316 -1.2514 30 1 3.8232 -1.2599 -0.2837 31 1 3.8188 -1.3510 -2.0613 32 1 2.0658 0.8956 -2.5741 33 1 0.4629 0.1644 -2.3202 34 1 2.7432 -1.3403 -3.7996 35 1 0.8792 -2.0066 -5.1729 36 1 0.2857 1.3427 -3.8681 37 1 -1.8957 2.4424 -3.5929 38 1 -3.8795 -1.2758 -4.2798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350013713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = -35.990191 kcal Electronic energy + Delta-G solvation = -21929.005177 eV Core-core repulsion = 18408.282616 eV Total energy + Delta-G solvation = -3520.722561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.01071 -48.93800 -39.22254 -37.18436 -34.40667 -32.57096 -30.89818 -29.70953 -28.84684 -26.87166 -24.72803 -23.80735 -22.92574 -22.38176 -19.64257 -19.08887 -18.03351 -17.20197 -16.39457 -16.04031 -15.85199 -15.49863 -15.33998 -15.16391 -14.57500 -14.40563 -14.20847 -13.71776 -13.50613 -13.26734 -12.75219 -12.50145 -12.26150 -11.91679 -11.80263 -11.47639 -11.32945 -11.07538 -10.90527 -10.66849 -10.38517 -10.22711 -10.05348 -9.92088 -9.51416 -9.03299 -8.89540 -8.43847 -8.14339 -7.20469 -6.02762 -4.07599 0.75001 0.99170 2.35131 3.28736 3.36790 3.40700 3.41840 3.84740 4.37971 4.40006 4.56371 4.65245 4.82289 5.01460 5.16592 5.28344 5.35431 5.54769 5.72170 5.75372 5.90026 5.91851 6.00415 6.05818 6.15084 6.25770 6.33889 6.62391 6.72833 6.74945 6.79090 6.92524 7.03881 7.12862 7.47239 7.70352 7.80811 8.18875 8.30487 8.56668 8.99066 9.57551 11.03701 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.004782 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.206561 B = 5854.092621 C = 6576.529281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.002 1.002 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.532 5.532 13 C 0.034 3.966 14 C 0.054 3.946 15 C -0.093 4.093 16 C -0.148 4.148 17 C -0.079 4.079 18 C -0.055 4.055 19 C -0.159 4.159 20 C 0.123 3.877 21 F -0.134 7.134 22 C -0.192 4.192 23 C 0.134 3.866 24 F -0.128 7.128 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.006 0.994 28 H 0.260 0.740 29 H 0.010 0.990 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 0.022 -15.136 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.257 5.257 13 C -0.114 4.114 14 C -0.073 4.073 15 C -0.111 4.111 16 C -0.167 4.167 17 C -0.080 4.080 18 C -0.073 4.073 19 C -0.178 4.178 20 C 0.103 3.897 21 F -0.113 7.113 22 C -0.211 4.211 23 C 0.114 3.886 24 F -0.107 7.107 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.008 -0.365 -14.961 15.493 hybrid contribution 0.358 0.189 0.900 0.987 sum -3.650 -0.176 -14.061 14.528 Atomic orbital electron populations 1.21849 0.97724 0.98632 1.00900 1.19261 0.92318 0.91959 0.85795 0.98442 1.21183 1.30899 1.12267 0.89683 0.91784 1.24935 0.95229 0.95101 0.99045 1.69895 1.36913 1.23089 1.23334 0.86466 0.78619 0.79609 0.82878 1.19727 1.21139 1.21016 1.62196 1.08704 1.53138 1.01649 1.22269 0.88869 0.98695 1.01609 1.21756 1.02057 0.93831 0.89672 1.23440 0.97794 0.96445 0.93437 1.21290 0.90818 1.01840 1.02775 1.19129 0.92819 0.93729 1.02343 1.21168 0.97902 0.92899 0.95333 1.21137 0.90966 1.01464 1.04268 1.17318 0.80915 0.90245 1.01200 1.91517 1.43701 1.83075 1.93002 1.20898 0.98382 0.94235 1.07624 1.17333 0.92919 0.77937 1.00381 1.91510 1.97186 1.31089 1.90883 0.94874 0.89317 0.97499 0.93018 0.97118 0.90381 0.93831 0.94953 0.88822 0.86572 0.85938 0.83653 0.83912 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.62 37.16 0.32 -2.93 16 2 C 0.21 5.32 2.06 -68.87 -0.14 5.17 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -13.64 7.88 -34.44 -0.27 -13.91 16 5 H 0.06 1.74 6.48 -52.49 -0.34 1.40 16 6 C 0.06 1.59 5.28 -17.82 -0.09 1.49 16 7 N -0.89 -25.29 11.29 55.43 0.63 -24.66 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.53 -11.31 4.58 -237.73 -1.09 -12.40 16 13 C 0.03 0.65 9.12 60.06 0.55 1.20 16 14 C 0.05 0.94 3.64 -4.97 -0.02 0.93 16 15 C -0.09 -1.34 9.23 -36.21 -0.33 -1.68 16 16 C -0.15 -2.00 9.43 -37.59 -0.35 -2.35 16 17 C -0.08 -1.09 5.09 -104.95 -0.53 -1.62 16 18 C -0.06 -0.70 7.32 -39.21 -0.29 -0.99 16 19 C -0.16 -1.94 10.01 -39.56 -0.40 -2.34 16 20 C 0.12 1.57 7.30 -39.34 -0.29 1.28 16 21 F -0.13 -1.74 17.26 2.25 0.04 -1.70 16 22 C -0.19 -2.42 9.99 -39.50 -0.39 -2.82 16 23 C 0.13 1.85 7.28 -39.04 -0.28 1.56 16 24 F -0.13 -1.82 16.82 2.25 0.04 -1.78 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 2.39 5.92 -51.93 -0.31 2.08 16 27 H 0.01 0.14 6.47 -51.93 -0.34 -0.20 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.01 0.20 8.12 -51.93 -0.42 -0.23 16 30 H 0.08 1.61 6.16 -51.93 -0.32 1.29 16 31 H 0.04 0.70 6.82 -51.93 -0.35 0.35 16 32 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 33 H 0.09 1.67 2.48 -51.93 -0.13 1.55 16 34 H 0.12 1.51 7.06 -52.49 -0.37 1.14 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.15 1.68 6.60 -52.49 -0.35 1.34 16 37 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -28.81 315.95 -7.77 -36.57 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.59 Total: 0.01 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.53 Total: -17.00 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.46 Total: -37.06 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.49 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.81 -7.77 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350013713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.582 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds