Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45209 * 109.46893 * 2 1 4 4 C 1.34772 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.21532 * 120.00240 * 359.97438 * 4 3 2 6 6 C 1.47230 * 119.99519 * 179.97438 * 4 3 2 7 7 C 1.36501 * 127.20258 * 359.68598 * 6 4 3 8 8 O 1.33632 * 108.37964 * 179.87136 * 7 6 4 9 9 C 1.34217 * 110.92610 * 0.40592 * 8 7 6 10 10 C 1.50700 * 125.42344 * 179.70773 * 9 8 7 11 11 N 1.46894 * 109.47677 * 270.04424 * 10 9 8 12 12 C 1.46903 * 111.00054 * 293.95992 * 11 10 9 13 13 C 1.53001 * 109.47047 * 164.09023 * 12 11 10 14 14 C 1.46895 * 111.00557 * 170.00332 * 11 10 9 15 15 C 1.50701 * 109.47191 * 284.31731 * 14 11 10 16 16 H 1.08006 * 119.99990 * 4.65399 * 15 14 11 17 17 C 1.37876 * 120.00250 * 184.65308 * 15 14 11 18 18 N 1.31513 * 119.99975 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47375 * 89.99794 * 19 17 15 21 21 H 1.48496 * 109.46975 * 210.00223 * 19 17 15 22 22 H 1.48498 * 109.46876 * 329.99792 * 19 17 15 23 23 C 1.34156 * 109.14309 * 359.75390 * 9 8 7 24 24 H 1.08999 * 109.47049 * 60.00456 * 1 2 3 25 25 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47306 * 300.00301 * 1 2 3 27 27 H 1.08997 * 109.47509 * 240.00202 * 2 1 3 28 28 H 1.08999 * 109.47049 * 119.99544 * 2 1 3 29 29 H 1.07996 * 125.80666 * 0.02562 * 7 6 4 30 30 H 1.08997 * 109.47221 * 30.05204 * 10 9 8 31 31 H 1.09009 * 109.46402 * 150.04602 * 10 9 8 32 32 H 1.08996 * 109.47084 * 284.08986 * 12 11 10 33 33 H 1.09000 * 109.47516 * 44.09286 * 12 11 10 34 34 H 1.09003 * 109.47180 * 179.48148 * 13 12 11 35 35 H 1.08998 * 109.47681 * 299.48541 * 13 12 11 36 36 H 1.09005 * 109.47109 * 59.48985 * 13 12 11 37 37 H 1.09004 * 109.46966 * 44.31132 * 14 11 10 38 38 H 1.08998 * 109.47784 * 164.31212 * 14 11 10 39 39 H 0.97001 * 120.00577 * 179.97438 * 18 17 15 40 40 H 1.08000 * 127.02256 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3501 1.5456 -0.0005 5 8 4.0904 0.5819 -0.0005 6 6 3.9127 2.9062 -0.0011 7 6 3.2234 4.0844 -0.0072 8 8 4.1052 5.0884 -0.0026 9 6 5.3635 4.6214 -0.0025 10 6 6.6097 5.4688 -0.0043 11 7 7.0135 5.7432 -1.3897 12 6 7.4285 4.5098 -2.0712 13 6 7.4585 4.7474 -3.5824 14 6 8.0776 6.7546 -1.4375 15 6 7.4871 8.1175 -1.1828 16 1 6.4417 8.2143 -0.9292 17 6 8.2813 9.2409 -1.2736 18 7 9.5544 9.1231 -1.5819 19 14 7.5495 10.9302 -0.9572 20 1 7.6748 11.2618 0.4848 21 1 8.2767 11.9435 -1.7632 22 1 6.1152 10.9282 -1.3418 23 6 5.3349 3.2802 -0.0017 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1484 4.1874 -0.0121 30 1 6.4102 6.4093 0.5092 31 1 7.4110 4.9373 0.5093 32 1 8.4226 4.2224 -1.7288 33 1 6.7210 3.7127 -1.8428 34 1 7.7753 3.8349 -4.0875 35 1 6.4624 5.0259 -3.9263 36 1 8.1593 5.5507 -3.8100 37 1 8.8236 6.5335 -0.6741 38 1 8.5485 6.7406 -2.4204 39 1 10.1131 9.9134 -1.6461 40 1 6.1832 2.6117 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353380708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -72.303600 kcal Electronic energy + Delta-G solvation = -21675.087987 eV Core-core repulsion = 18263.878274 eV Total energy + Delta-G solvation = -3411.209713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.49364 -40.22158 -37.09917 -36.64411 -33.03031 -32.66890 -31.94121 -31.20973 -29.62165 -26.92008 -25.06016 -24.48109 -22.88418 -22.60965 -20.98694 -20.48384 -19.75776 -17.45193 -17.21780 -16.77933 -16.52986 -15.96887 -15.81189 -14.89934 -14.66134 -14.23644 -14.02948 -13.88555 -13.59104 -13.25345 -13.05713 -12.85641 -12.71034 -12.22580 -12.15395 -11.87367 -11.62984 -11.37638 -11.18220 -10.92122 -10.83680 -10.76213 -10.68052 -10.61818 -10.30219 -9.81290 -9.69951 -9.29047 -8.53264 -8.43937 -7.38034 -6.04626 -4.06172 1.17846 2.10467 2.44430 2.99274 3.07505 3.31261 3.37858 3.42629 4.41274 4.53919 4.63259 4.64320 4.68942 4.90201 4.96385 4.99433 5.31466 5.34434 5.45599 5.56031 5.59249 5.66909 5.68324 5.77966 5.96030 6.00234 6.09454 6.17079 6.26723 6.32540 6.46891 6.56473 6.80327 7.08293 7.21379 7.26954 7.69850 7.78131 8.03417 8.10438 8.47041 9.01320 9.58267 11.05828 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028507 B = 0.003386 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.987972 B = 8266.234988 C = 8851.921000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.359 6.359 4 C 0.542 3.458 5 O -0.510 6.510 6 C -0.235 4.235 7 C 0.050 3.950 8 O -0.156 6.156 9 C 0.033 3.967 10 C 0.131 3.869 11 N -0.532 5.532 12 C 0.042 3.958 13 C -0.142 4.142 14 C 0.191 3.809 15 C -0.507 4.507 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.173 4.173 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.062 0.938 37 H -0.008 1.008 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 -14.872 3.229 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.277 6.277 4 C 0.388 3.612 5 O -0.399 6.399 6 C -0.238 4.238 7 C -0.022 4.022 8 O -0.050 6.050 9 C -0.017 4.017 10 C 0.003 3.997 11 N -0.257 5.257 12 C -0.086 4.086 13 C -0.199 4.199 14 C 0.067 3.933 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.192 4.192 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.233 0.767 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.010 0.990 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.677 -14.565 2.938 20.885 hybrid contribution 0.401 0.175 0.512 0.673 sum -14.276 -14.391 3.450 20.562 Atomic orbital electron populations 1.21811 0.92547 1.02989 1.03603 1.23017 0.95275 0.80011 1.02707 1.86540 1.23945 1.32474 1.84715 1.20052 0.80154 0.88666 0.72373 1.90833 1.60373 1.42255 1.46420 1.20429 0.94378 0.90480 1.18516 1.24612 0.95554 0.84429 0.97579 1.83861 1.15690 1.36072 1.69329 1.22696 0.84060 0.92821 1.02112 1.20560 0.87522 0.98671 0.92981 1.62149 1.42810 1.08865 1.11896 1.22148 0.98032 0.93005 0.95454 1.21719 1.02457 1.00739 0.95020 1.19833 0.87266 0.88799 0.97374 1.21172 0.96356 0.90371 1.46695 0.91791 1.24981 0.94824 0.99338 0.95419 1.69950 1.05320 1.29714 1.48870 0.86504 0.79302 0.83610 0.78069 1.20738 1.21300 1.19728 1.22363 0.94567 0.94190 1.08128 0.91385 0.90212 0.91424 0.91154 0.91196 0.76747 0.87786 0.92241 0.95689 0.91822 0.93551 0.92481 0.91941 0.99011 0.93984 0.92892 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.36 -4.16 10.07 -40.69 -0.41 -4.57 16 4 C 0.54 7.69 7.95 34.38 0.27 7.96 16 5 O -0.51 -8.47 16.77 -19.29 -0.32 -8.80 16 6 C -0.24 -3.36 6.31 -103.30 -0.65 -4.01 16 7 C 0.05 0.62 11.94 30.11 0.36 0.98 16 8 O -0.16 -2.45 10.52 7.70 0.08 -2.36 16 9 C 0.03 0.54 6.25 -35.75 -0.22 0.31 16 10 C 0.13 2.40 5.31 -4.98 -0.03 2.37 16 11 N -0.53 -11.13 4.37 -237.52 -1.04 -12.17 16 12 C 0.04 0.76 5.54 -3.82 -0.02 0.74 16 13 C -0.14 -2.46 9.98 37.16 0.37 -2.09 16 14 C 0.19 4.79 4.59 -4.98 -0.02 4.77 16 15 C -0.51 -13.85 8.61 -34.44 -0.30 -14.15 16 16 H 0.06 1.74 7.66 -52.48 -0.40 1.34 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.17 -2.65 9.18 -37.45 -0.34 -3.00 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.22 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.10 2.03 7.32 -51.93 -0.38 1.65 16 31 H 0.06 1.01 8.12 -51.92 -0.42 0.59 16 32 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 33 H 0.06 1.07 5.49 -51.93 -0.28 0.79 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.19 6.52 -51.93 -0.34 0.86 16 37 H -0.01 -0.21 8.00 -51.93 -0.42 -0.62 16 38 H 0.04 1.13 6.24 -51.93 -0.32 0.80 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.16 2.31 7.95 -52.49 -0.42 1.89 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -31.43 342.20 -6.80 -38.24 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.92 Total: -1.98 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.07 Total: -4.38 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.30 Total: -37.60 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.65 Total: -15.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.43 -6.80 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353380708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.067 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds