Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45209 * 109.46893 * 2 1 4 4 C 1.34772 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.21532 * 120.00240 * 359.97438 * 4 3 2 6 6 C 1.47230 * 119.99519 * 179.97438 * 4 3 2 7 7 C 1.36501 * 127.20258 * 359.68598 * 6 4 3 8 8 O 1.33632 * 108.37964 * 179.87136 * 7 6 4 9 9 C 1.34217 * 110.92610 * 0.40592 * 8 7 6 10 10 C 1.50700 * 125.42344 * 179.70773 * 9 8 7 11 11 N 1.46894 * 109.47677 * 270.04424 * 10 9 8 12 12 C 1.46903 * 111.00054 * 293.95992 * 11 10 9 13 13 C 1.53001 * 109.47047 * 164.09023 * 12 11 10 14 14 C 1.46895 * 111.00557 * 170.00332 * 11 10 9 15 15 C 1.50701 * 109.47191 * 284.31731 * 14 11 10 16 16 H 1.08006 * 119.99990 * 4.65399 * 15 14 11 17 17 C 1.37876 * 120.00250 * 184.65308 * 15 14 11 18 18 N 1.31513 * 119.99975 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47375 * 89.99794 * 19 17 15 21 21 H 1.48496 * 109.46975 * 210.00223 * 19 17 15 22 22 H 1.48498 * 109.46876 * 329.99792 * 19 17 15 23 23 C 1.34156 * 109.14309 * 359.75390 * 9 8 7 24 24 H 1.08999 * 109.47049 * 60.00456 * 1 2 3 25 25 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47306 * 300.00301 * 1 2 3 27 27 H 1.08997 * 109.47509 * 240.00202 * 2 1 3 28 28 H 1.08999 * 109.47049 * 119.99544 * 2 1 3 29 29 H 1.07996 * 125.80666 * 0.02562 * 7 6 4 30 30 H 1.08997 * 109.47221 * 30.05204 * 10 9 8 31 31 H 1.09009 * 109.46402 * 150.04602 * 10 9 8 32 32 H 1.08996 * 109.47084 * 284.08986 * 12 11 10 33 33 H 1.09000 * 109.47516 * 44.09286 * 12 11 10 34 34 H 1.09003 * 109.47180 * 179.48148 * 13 12 11 35 35 H 1.08998 * 109.47681 * 299.48541 * 13 12 11 36 36 H 1.09005 * 109.47109 * 59.48985 * 13 12 11 37 37 H 1.09004 * 109.46966 * 44.31132 * 14 11 10 38 38 H 1.08998 * 109.47784 * 164.31212 * 14 11 10 39 39 H 0.97001 * 120.00577 * 179.97438 * 18 17 15 40 40 H 1.08000 * 127.02256 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3501 1.5456 -0.0005 5 8 4.0904 0.5819 -0.0005 6 6 3.9127 2.9062 -0.0011 7 6 3.2234 4.0844 -0.0072 8 8 4.1052 5.0884 -0.0026 9 6 5.3635 4.6214 -0.0025 10 6 6.6097 5.4688 -0.0043 11 7 7.0135 5.7432 -1.3897 12 6 7.4285 4.5098 -2.0712 13 6 7.4585 4.7474 -3.5824 14 6 8.0776 6.7546 -1.4375 15 6 7.4871 8.1175 -1.1828 16 1 6.4417 8.2143 -0.9292 17 6 8.2813 9.2409 -1.2736 18 7 9.5544 9.1231 -1.5819 19 14 7.5495 10.9302 -0.9572 20 1 7.6748 11.2618 0.4848 21 1 8.2767 11.9435 -1.7632 22 1 6.1152 10.9282 -1.3418 23 6 5.3349 3.2802 -0.0017 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1484 4.1874 -0.0121 30 1 6.4102 6.4093 0.5092 31 1 7.4110 4.9373 0.5093 32 1 8.4226 4.2224 -1.7288 33 1 6.7210 3.7127 -1.8428 34 1 7.7753 3.8349 -4.0875 35 1 6.4624 5.0259 -3.9263 36 1 8.1593 5.5507 -3.8100 37 1 8.8236 6.5335 -0.6741 38 1 8.5485 6.7406 -2.4204 39 1 10.1131 9.9134 -1.6461 40 1 6.1832 2.6117 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353380708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -91.412158 kcal Electronic energy + Delta-G solvation = -21675.916596 eV Core-core repulsion = 18263.878274 eV Total energy + Delta-G solvation = -3412.038322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.66746 -41.23778 -38.73095 -37.64827 -34.81575 -34.07920 -32.89958 -32.30892 -31.18137 -28.69909 -26.37562 -25.69115 -24.46287 -23.58313 -22.17992 -21.88321 -21.05948 -18.67014 -18.51816 -18.24664 -17.72637 -17.22561 -16.93165 -16.64275 -16.15885 -15.64009 -15.43086 -15.05625 -14.84602 -14.52526 -14.15432 -14.09115 -13.90521 -13.58452 -13.29803 -12.97770 -12.94921 -12.82149 -12.65353 -12.57381 -12.50318 -12.24094 -12.10768 -11.78684 -11.55124 -11.53873 -11.30708 -10.90720 -10.57625 -9.72761 -9.07656 -8.17183 -6.26546 0.12635 0.86341 1.43670 1.44662 1.51022 1.56326 1.87194 1.98055 2.43122 3.14139 3.31407 3.51614 3.59380 3.95897 4.02306 4.09304 4.18118 4.22567 4.31602 4.38277 4.41646 4.58199 4.65805 4.71754 4.86742 4.91749 4.95053 4.96881 5.01620 5.12945 5.17852 5.24784 5.27291 5.35458 5.39506 5.68769 5.99285 6.09275 6.30327 6.57605 6.66441 6.88012 7.42657 8.93166 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028507 B = 0.003386 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.987972 B = 8266.234988 C = 8851.921000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.547 3.453 5 O -0.542 6.542 6 C -0.258 4.258 7 C 0.083 3.917 8 O -0.171 6.171 9 C 0.013 3.987 10 C 0.134 3.866 11 N -0.541 5.541 12 C 0.042 3.958 13 C -0.137 4.137 14 C 0.207 3.793 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.266 1.266 23 C -0.165 4.165 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.262 0.738 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.037 0.963 37 H -0.031 1.031 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 -15.356 3.463 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.270 6.270 4 C 0.394 3.606 5 O -0.434 6.434 6 C -0.261 4.261 7 C 0.012 3.988 8 O -0.065 6.065 9 C -0.036 4.036 10 C 0.006 3.994 11 N -0.266 5.266 12 C -0.086 4.086 13 C -0.194 4.194 14 C 0.081 3.919 15 C -0.558 4.558 16 H 0.079 0.921 17 C -0.195 4.195 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.185 4.185 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.277 0.723 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.056 0.944 37 H -0.013 1.013 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.246 -15.064 3.178 23.118 hybrid contribution 1.093 0.209 0.449 1.200 sum -16.154 -14.854 3.627 22.243 Atomic orbital electron populations 1.21832 0.89960 1.04507 1.03920 1.23354 0.97223 0.78654 1.02693 1.86533 1.22246 1.34193 1.84032 1.20016 0.80824 0.88156 0.71605 1.90818 1.61273 1.43123 1.48164 1.20496 0.93992 0.91351 1.20224 1.25470 0.96725 0.82978 0.93630 1.83853 1.15706 1.37213 1.69738 1.22161 0.83930 0.92654 1.04852 1.20405 0.89102 0.98459 0.91395 1.62052 1.41131 1.09566 1.13891 1.22222 0.98460 0.92220 0.95662 1.21687 1.01669 1.01342 0.94752 1.19459 0.87674 0.89597 0.95128 1.21459 0.96264 0.91636 1.46457 0.92080 1.25847 0.95152 1.03348 0.95107 1.70070 1.06645 1.30864 1.49868 0.85438 0.78621 0.78676 0.78236 1.19807 1.20952 1.19051 1.22451 0.95654 0.93735 1.06696 0.91113 0.88106 0.91001 0.91335 0.91206 0.72260 0.89547 0.91332 0.95683 0.90055 0.90496 0.92728 0.94409 1.01313 0.96310 0.92738 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.05 0.85 6.20 71.98 0.45 1.30 16 3 O -0.35 -7.36 10.07 -56.83 -0.57 -7.93 16 4 C 0.55 14.64 7.95 70.19 0.56 15.19 16 5 O -0.54 -17.58 16.77 19.73 0.33 -17.25 16 6 C -0.26 -6.86 6.31 -19.01 -0.12 -6.98 16 7 C 0.08 1.83 11.94 67.41 0.80 2.64 16 8 O -0.17 -5.08 10.52 4.63 0.05 -5.03 16 9 C 0.01 0.42 6.25 24.75 0.15 0.57 16 10 C 0.13 4.99 5.31 85.56 0.45 5.44 16 11 N -0.54 -23.04 4.37 -905.38 -3.96 -27.00 16 12 C 0.04 1.52 5.54 86.30 0.48 2.00 16 13 C -0.14 -4.72 9.98 71.98 0.72 -4.00 16 14 C 0.21 10.73 4.59 85.56 0.39 11.13 16 15 C -0.52 -28.95 8.61 25.60 0.22 -28.73 16 16 H 0.06 3.37 7.66 -2.91 -0.02 3.34 16 17 C 0.00 0.19 5.46 84.65 0.46 0.66 16 18 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 19 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C -0.17 -4.92 9.18 23.65 0.22 -4.70 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.26 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.09 3.47 7.32 -2.39 -0.02 3.45 16 31 H 0.07 2.38 8.12 -2.38 -0.02 2.36 16 32 H 0.02 0.90 8.05 -2.39 -0.02 0.89 16 33 H 0.08 2.66 5.49 -2.39 -0.01 2.65 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.47 6.52 -2.38 -0.02 1.46 16 37 H -0.03 -1.70 8.00 -2.38 -0.02 -1.72 16 38 H 0.02 1.06 6.24 -2.39 -0.01 1.04 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.16 4.57 7.95 -2.91 -0.02 4.55 16 Total: -1.00 -68.58 342.20 4.72 -63.86 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.03 Total: 8.64 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.53 Total: -6.05 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -3.67 Total: -82.16 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.19 Total: -30.21 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.58 4.72 -63.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353380708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.551 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds