Wall clock time and date at job start Tue Mar 31 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47091 * 2 1 4 4 C 1.34768 * 117.00020 * 179.97438 * 3 2 1 5 5 O 1.21534 * 120.00195 * 359.97438 * 4 3 2 6 6 C 1.47236 * 119.99970 * 180.02562 * 4 3 2 7 7 C 1.36498 * 127.19812 * 359.67977 * 6 4 3 8 8 O 1.33629 * 108.38139 * 179.87180 * 7 6 4 9 9 C 1.34224 * 110.92242 * 0.41377 * 8 7 6 10 10 C 1.50697 * 125.42880 * 179.70771 * 9 8 7 11 11 N 1.46898 * 109.47401 * 270.04542 * 10 9 8 12 12 C 1.46900 * 111.00070 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46670 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46849 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99959 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99818 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99699 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00252 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47278 * 89.99552 * 19 17 15 21 21 H 1.48499 * 109.47051 * 209.99661 * 19 17 15 22 22 H 1.48503 * 109.46947 * 329.99716 * 19 17 15 23 23 C 1.34163 * 109.14563 * 359.74639 * 9 8 7 24 24 H 1.09004 * 109.47006 * 60.00090 * 1 2 3 25 25 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47056 * 300.00206 * 1 2 3 27 27 H 1.09001 * 109.47142 * 239.99963 * 2 1 3 28 28 H 1.09004 * 109.47006 * 119.99910 * 2 1 3 29 29 H 1.07996 * 125.81167 * 0.02585 * 7 6 4 30 30 H 1.09002 * 109.46791 * 30.03951 * 10 9 8 31 31 H 1.09000 * 109.47264 * 150.04182 * 10 9 8 32 32 H 1.00899 * 110.99806 * 303.95483 * 11 10 9 33 33 H 1.08998 * 109.46867 * 299.99537 * 12 11 10 34 34 H 1.09002 * 109.46957 * 59.99844 * 12 11 10 35 35 H 1.08997 * 109.47389 * 300.00105 * 13 12 11 36 36 H 1.09002 * 109.46710 * 60.00366 * 13 12 11 37 37 H 1.09004 * 109.47699 * 300.00066 * 14 13 12 38 38 H 1.09000 * 109.47642 * 60.00576 * 14 13 12 39 39 H 0.96996 * 119.99891 * 180.02562 * 18 17 15 40 40 H 1.07995 * 127.02410 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0905 0.5818 0.0015 6 6 3.9128 2.9062 0.0011 7 6 3.2235 4.0843 -0.0048 8 8 4.1052 5.0884 0.0010 9 6 5.3636 4.6213 0.0017 10 6 6.6099 5.4686 0.0014 11 7 7.0146 5.7438 -1.3837 12 6 8.2287 6.5698 -1.4231 13 6 8.6186 6.8342 -2.8788 14 6 9.8827 7.6951 -2.9198 15 6 10.2665 7.9560 -4.3537 16 1 9.6683 7.5489 -5.1554 17 6 11.3806 8.7153 -4.6419 18 7 11.7158 8.9426 -5.8931 19 14 12.4149 9.4201 -3.2552 20 1 13.4774 8.4499 -2.8877 21 1 13.0386 10.6922 -3.7001 22 1 11.5509 9.6784 -2.0753 23 6 5.3351 3.2800 0.0018 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1485 4.1874 -0.0106 30 1 6.4100 6.4089 0.5151 31 1 7.4108 4.9369 0.5152 32 1 7.1433 4.8864 -1.8999 33 1 8.0396 7.5178 -0.9194 34 1 9.0410 6.0461 -0.9191 35 1 8.8077 5.8861 -3.3822 36 1 7.8064 7.3577 -3.3831 37 1 9.6933 8.6432 -2.4165 38 1 10.6952 7.1720 -2.4154 39 1 12.4998 9.4765 -6.0959 40 1 6.1833 2.6115 0.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354346513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:25 Heat of formation + Delta-G solvation = -85.572988 kcal Electronic energy + Delta-G solvation = -20442.725862 eV Core-core repulsion = 17030.940746 eV Total energy + Delta-G solvation = -3411.785116 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.88984 -40.44723 -36.86573 -36.78591 -33.86513 -33.27659 -32.20047 -31.77147 -30.20957 -27.12779 -25.22969 -24.56319 -23.04603 -22.12003 -21.37589 -20.61824 -20.07039 -17.96174 -17.45844 -16.99169 -16.71526 -16.39038 -16.22236 -15.63286 -14.70447 -14.53382 -14.39637 -14.02903 -13.90893 -13.65032 -13.39554 -13.25397 -13.00987 -12.60936 -12.39417 -12.04147 -11.93845 -11.81785 -11.72653 -10.97555 -10.93593 -10.91960 -10.80126 -10.18095 -9.97500 -9.76739 -9.64410 -9.17823 -9.00680 -8.52860 -8.41045 -6.02918 -4.00876 0.86163 1.64582 2.20258 2.55356 2.77693 3.30924 3.38412 3.41718 4.13940 4.25148 4.40300 4.45950 4.49255 4.52191 4.65042 4.83042 4.97828 5.02245 5.22782 5.30765 5.31713 5.32260 5.42429 5.51751 5.59837 5.61698 5.68492 5.97044 6.06172 6.10742 6.46896 6.53057 6.70709 6.88852 7.03861 7.33045 7.36045 7.45801 7.46089 7.80854 8.55930 9.02637 9.59397 11.10630 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.040632 B = 0.002183 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.938561 B =12823.954008 C =13029.825040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.359 6.359 4 C 0.540 3.460 5 O -0.506 6.506 6 C -0.234 4.234 7 C 0.059 3.941 8 O -0.159 6.159 9 C 0.009 3.991 10 C 0.133 3.867 11 N -0.688 5.688 12 C 0.057 3.943 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.520 4.520 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.157 4.157 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.220 0.780 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.016 0.984 38 H 0.010 0.990 39 H 0.263 0.737 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.772 -14.755 16.545 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.276 6.276 4 C 0.385 3.615 5 O -0.395 6.395 6 C -0.236 4.236 7 C -0.013 4.013 8 O -0.053 6.053 9 C -0.041 4.041 10 C 0.004 3.996 11 N -0.320 5.320 12 C -0.071 4.071 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.558 4.558 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.543 5.543 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.177 4.177 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.237 0.763 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.909 -14.120 16.368 30.778 hybrid contribution 1.279 -0.705 0.811 1.671 sum -20.629 -14.825 17.179 30.667 Atomic orbital electron populations 1.21819 0.92397 1.03146 1.03623 1.23056 0.95379 0.79713 1.02843 1.86527 1.23703 1.32792 1.84601 1.19987 0.80353 0.88534 0.72579 1.90856 1.60390 1.42168 1.46075 1.20469 0.94239 0.90800 1.18124 1.24695 0.95595 0.84208 0.96754 1.83823 1.15496 1.36238 1.69744 1.22279 0.84065 0.92714 1.04995 1.20407 0.88441 0.98416 0.92355 1.60541 1.37346 1.23305 1.10817 1.22205 0.88266 0.96651 0.99994 1.21457 0.99414 1.00489 0.92466 1.19547 0.92722 0.94843 0.97967 1.21150 1.11082 1.32284 0.91251 0.91008 1.25052 0.97335 0.95873 0.95386 1.69920 1.26728 1.39928 1.17735 0.86757 0.80657 0.78679 0.83039 1.20384 1.21405 1.19026 1.22448 0.95035 0.94119 1.06114 0.91330 0.90073 0.91414 0.91009 0.91099 0.76340 0.88844 0.91654 0.83719 0.91056 0.95295 0.92896 0.91787 0.96540 0.97217 0.92772 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.29 37.16 0.38 -0.28 16 2 C 0.06 0.45 6.20 37.16 0.23 0.68 16 3 O -0.36 -3.36 10.07 -40.68 -0.41 -3.77 16 4 C 0.54 6.29 7.95 34.39 0.27 6.56 16 5 O -0.51 -7.27 16.77 -19.29 -0.32 -7.59 16 6 C -0.23 -2.55 6.31 -103.30 -0.65 -3.20 16 7 C 0.06 0.51 11.94 30.10 0.36 0.87 16 8 O -0.16 -1.72 10.52 7.69 0.08 -1.63 16 9 C 0.01 0.09 6.79 -35.75 -0.24 -0.15 16 10 C 0.13 1.42 6.20 -4.98 -0.03 1.39 16 11 N -0.69 -9.18 6.49 -115.06 -0.75 -9.93 16 12 C 0.06 0.87 5.69 -3.82 -0.02 0.85 16 13 C -0.10 -1.95 5.41 -26.73 -0.14 -2.10 16 14 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 19 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 C -0.16 -1.75 10.90 -37.44 -0.41 -2.16 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.22 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.34 4.42 8.72 -39.29 -0.34 4.08 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -33.77 348.35 -7.03 -40.81 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.19 Total: -1.46 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.80 Total: -11.42 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.03 Total: -37.28 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.65 Total: -12.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.77 -7.03 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354346513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.765 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds