Wall clock time and date at job start Tue Mar 31 2020 05:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47491 * 2 1 4 4 C 1.53003 * 109.46842 * 239.99988 * 2 1 3 5 5 C 1.50701 * 109.47125 * 65.66577 * 4 2 1 6 6 H 1.07998 * 119.99688 * 5.06815 * 5 4 2 7 7 C 1.37880 * 119.99980 * 184.80085 * 5 4 2 8 8 N 1.31515 * 120.00110 * 0.26752 * 7 5 4 9 9 Si 1.86800 * 119.99956 * 180.27432 * 7 5 4 10 10 H 1.48502 * 109.47240 * 89.99265 * 9 7 5 11 11 H 1.48495 * 109.47106 * 209.99847 * 9 7 5 12 12 H 1.48504 * 109.47107 * 329.99443 * 9 7 5 13 13 N 1.46896 * 109.47012 * 120.00485 * 2 1 3 14 14 C 1.46851 * 111.00033 * 190.78877 * 13 2 1 15 15 C 1.53041 * 109.52452 * 174.15987 * 14 13 2 16 16 C 1.53117 * 109.27580 * 59.17753 * 15 14 13 17 17 C 1.53117 * 109.16258 * 302.34078 * 16 15 14 18 18 O 1.42898 * 109.50646 * 297.72135 * 17 16 15 19 19 C 1.53003 * 109.50518 * 177.63820 * 17 16 15 20 20 F 1.39900 * 109.46869 * 60.00177 * 19 17 16 21 21 F 1.39900 * 109.47141 * 180.02562 * 19 17 16 22 22 F 1.39900 * 109.47001 * 300.00642 * 19 17 16 23 23 C 1.46847 * 111.00505 * 66.57676 * 13 2 1 24 24 H 1.09000 * 109.46652 * 300.00072 * 1 2 3 25 25 H 1.09003 * 109.46709 * 59.99497 * 1 2 3 26 26 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47563 * 305.66188 * 4 2 1 28 28 H 1.09001 * 109.46868 * 185.66528 * 4 2 1 29 29 H 0.96994 * 120.00101 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46009 * 294.17293 * 14 13 2 31 31 H 1.08997 * 109.46293 * 54.14166 * 14 13 2 32 32 H 1.08997 * 109.50287 * 179.11764 * 15 14 13 33 33 H 1.09000 * 109.50083 * 299.23534 * 15 14 13 34 34 H 1.08992 * 109.52940 * 62.25627 * 16 15 14 35 35 H 1.09011 * 109.51962 * 182.44121 * 16 15 14 36 36 H 0.96701 * 113.99788 * 299.99651 * 18 17 16 37 37 H 1.09005 * 109.45727 * 305.85722 * 23 13 2 38 38 H 1.08996 * 109.46094 * 65.82003 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6554 0.0655 -2.4757 6 1 1.1752 1.0272 -2.3717 7 6 1.9216 -0.4400 -3.7306 8 7 2.5064 -1.6112 -3.8573 9 14 1.4518 0.5387 -5.2507 10 1 2.5805 1.4222 -5.6390 11 1 1.1472 -0.3940 -6.3653 12 1 0.2543 1.3660 -4.9563 13 7 2.0197 -0.6926 1.1994 14 6 3.4648 -0.4940 1.3686 15 6 3.9125 -1.1037 2.6990 16 6 3.5792 -2.5981 2.7077 17 6 2.0757 -2.7791 2.4815 18 8 1.3548 -2.1662 3.5523 19 6 1.7429 -4.2716 2.4300 20 9 2.1077 -4.8727 3.6394 21 9 0.3691 -4.4362 2.2226 22 9 2.4476 -4.8706 1.3803 23 6 1.6813 -2.1209 1.1574 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.5962 -1.7155 -1.3015 28 1 3.1252 -0.8100 -1.2000 29 1 2.6933 -1.9669 -4.7400 30 1 3.9963 -0.9789 0.5498 31 1 3.6877 0.5729 1.3648 32 1 4.9877 -0.9699 2.8171 33 1 3.3915 -0.6098 3.5193 34 1 4.1303 -3.0990 1.9119 35 1 3.8570 -3.0277 3.6704 36 1 1.5580 -2.5328 4.4237 37 1 0.6088 -2.2355 1.0001 38 1 2.2212 -2.5981 0.3395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411287393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:10 Heat of formation + Delta-G solvation = -210.027228 kcal Electronic energy + Delta-G solvation = -24225.098459 eV Core-core repulsion = 20266.059862 eV Total energy + Delta-G solvation = -3959.038598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.11519 -47.65674 -47.53031 -39.60864 -36.75212 -34.06210 -32.46809 -30.79591 -29.84713 -27.03205 -25.90398 -24.51650 -23.02098 -22.11483 -20.36617 -19.12663 -18.42131 -18.23563 -17.99704 -16.67776 -16.10019 -15.30061 -14.84010 -14.56624 -14.42324 -14.39411 -14.04115 -13.83717 -13.80753 -13.71719 -13.69967 -13.42237 -13.07523 -12.80176 -12.39956 -12.10561 -12.02362 -11.70139 -11.12413 -11.05366 -10.92122 -10.85971 -10.68438 -10.41862 -10.24420 -10.10880 -9.88849 -9.60409 -9.14363 -8.38993 -7.55244 -6.03902 -4.06187 2.64380 3.29511 3.36383 3.39338 3.65995 3.70305 3.88902 4.34583 4.40781 4.51279 4.64695 4.81041 5.12208 5.22595 5.31866 5.55338 5.70024 5.72594 5.85359 5.90311 5.98673 6.15365 6.19842 6.27643 6.40420 6.44734 6.79674 6.87854 7.02451 7.31066 7.45683 7.49297 7.64775 7.79679 7.95730 8.38694 8.99615 9.57817 11.07174 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023356 B = 0.005277 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.530069 B = 5304.762838 C = 5642.582310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.081 3.919 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.514 4.514 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.520 5.520 14 C 0.048 3.952 15 C -0.105 4.105 16 C -0.149 4.149 17 C 0.107 3.893 18 O -0.508 6.508 19 C 0.422 3.578 20 F -0.189 7.189 21 F -0.175 7.175 22 F -0.176 7.176 23 C 0.064 3.936 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.022 0.978 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.373 0.627 37 H 0.092 0.908 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -3.352 15.359 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.042 4.042 5 C -0.553 4.553 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.244 5.244 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.187 4.187 17 C 0.062 3.938 18 O -0.312 6.312 19 C 0.367 3.633 20 F -0.170 7.170 21 F -0.156 7.156 22 F -0.157 7.157 23 C -0.064 4.064 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.111 0.889 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.000 -2.933 15.144 15.458 hybrid contribution 0.403 -0.733 -1.221 1.480 sum 1.402 -3.666 13.923 14.466 Atomic orbital electron populations 1.21698 0.95084 1.01063 1.00668 1.21893 0.95325 0.97569 0.87819 0.90907 1.19720 0.96094 0.96460 0.91970 1.21124 1.39074 1.04475 0.90653 0.92452 1.25015 0.95219 0.94972 0.99164 1.69955 1.42419 1.17664 1.23357 0.86611 0.78871 0.79866 0.82770 1.20727 1.21285 1.19807 1.62207 1.13218 1.08539 1.40435 1.22122 0.88942 1.01059 0.95935 1.21472 1.00538 0.93047 0.99220 1.22310 0.93063 0.99990 1.03368 1.22509 0.94071 0.84349 0.92820 1.86863 1.66600 1.61272 1.16465 1.21730 0.75009 0.93033 0.73555 1.93137 1.91567 1.86208 1.46098 1.93198 1.31420 1.96470 1.94560 1.93207 1.78629 1.85893 1.57990 1.22045 1.03165 0.90828 0.90391 0.93937 0.91528 0.93678 0.95940 0.96949 0.93009 0.93900 0.90539 0.91161 0.90451 0.89820 0.90657 0.78003 0.88937 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.96 37.16 0.33 -2.12 16 2 C 0.08 1.63 2.33 -67.71 -0.16 1.47 16 3 H 0.07 1.48 7.97 -51.93 -0.41 1.07 16 4 C 0.00 -0.11 3.58 -27.88 -0.10 -0.21 16 5 C -0.51 -14.00 8.32 -34.44 -0.29 -14.28 16 6 H 0.06 1.52 7.30 -52.49 -0.38 1.13 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.52 -9.13 4.48 -226.69 -1.02 -10.15 16 14 C 0.05 0.74 5.15 -3.83 -0.02 0.72 16 15 C -0.11 -1.27 5.94 -26.65 -0.16 -1.43 16 16 C -0.15 -1.78 4.74 -26.61 -0.13 -1.90 16 17 C 0.11 1.47 0.51 -90.54 -0.05 1.42 16 18 O -0.51 -6.54 12.26 -35.23 -0.43 -6.97 16 19 C 0.42 5.88 2.38 37.16 0.09 5.97 16 20 F -0.19 -2.32 16.48 2.25 0.04 -2.28 16 21 F -0.18 -2.67 16.77 2.25 0.04 -2.63 16 22 F -0.18 -2.69 16.23 2.25 0.04 -2.65 16 23 C 0.06 1.11 3.26 -3.83 -0.01 1.10 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.34 7.11 -51.93 -0.37 0.97 16 26 H 0.04 0.87 6.45 -51.93 -0.34 0.53 16 27 H 0.02 0.60 6.81 -51.93 -0.35 0.24 16 28 H 0.01 0.32 6.63 -51.93 -0.34 -0.02 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 0.75 6.79 -51.93 -0.35 0.40 16 31 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.93 7.80 -51.93 -0.40 0.52 16 34 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 35 H 0.07 0.72 7.88 -51.92 -0.41 0.31 16 36 H 0.37 3.22 8.70 45.56 0.40 3.61 16 37 H 0.09 1.69 5.94 -51.93 -0.31 1.38 16 38 H 0.07 1.35 6.34 -51.93 -0.33 1.02 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -29.76 307.00 -5.98 -35.74 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.40 Total: 1.39 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.58 Total: -7.74 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.28 Total: -35.83 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.43 Total: -6.97 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.11 Total: -7.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.76 -5.98 -35.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411287393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.287 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds