Wall clock time and date at job start Tue Mar 31 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47498 * 2 1 4 4 C 1.53001 * 109.47123 * 120.00474 * 2 1 3 5 5 C 1.50701 * 109.47203 * 195.70959 * 4 2 1 6 6 H 1.08002 * 119.99896 * 5.56404 * 5 4 2 7 7 C 1.37873 * 119.99951 * 185.56405 * 5 4 2 8 8 N 1.31518 * 120.00156 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00094 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46801 * 90.00156 * 9 7 5 11 11 H 1.48500 * 109.47044 * 210.00231 * 9 7 5 12 12 H 1.48495 * 109.46902 * 330.00233 * 9 7 5 13 13 N 1.46906 * 109.47324 * 239.99978 * 2 1 3 14 14 C 1.47169 * 110.99565 * 50.40815 * 13 2 1 15 15 C 1.52896 * 108.49287 * 52.15291 * 14 13 2 16 16 C 1.50722 * 109.96047 * 50.39927 * 15 14 13 17 17 C 1.38925 * 118.45561 * 163.25222 * 16 15 14 18 18 F 1.35094 * 119.83786 * 359.52161 * 17 16 15 19 19 C 1.38218 * 120.32922 * 179.80405 * 17 16 15 20 20 C 1.38450 * 119.77321 * 359.93160 * 19 17 16 21 21 F 1.35092 * 120.07883 * 180.02562 * 20 19 17 22 22 C 1.38248 * 119.83951 * 0.06371 * 20 19 17 23 23 C 1.37809 * 121.66885 * 343.09188 * 16 15 14 24 24 C 1.46627 * 111.00056 * 173.39316 * 13 2 1 25 25 H 1.08991 * 109.47028 * 299.99754 * 1 2 3 26 26 H 1.08997 * 109.46932 * 59.99843 * 1 2 3 27 27 H 1.09004 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47161 * 315.70840 * 4 2 1 29 29 H 1.09007 * 109.47222 * 75.71054 * 4 2 1 30 30 H 0.97000 * 119.99838 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.63652 * 292.44735 * 14 13 2 32 32 H 1.09003 * 109.63043 * 171.84880 * 14 13 2 33 33 H 1.08996 * 109.39126 * 290.24893 * 15 14 13 34 34 H 1.09000 * 109.38480 * 170.54692 * 15 14 13 35 35 H 1.07995 * 120.11383 * 179.97438 * 19 17 16 36 36 H 1.08004 * 119.79025 * 180.02562 * 22 20 19 37 37 H 1.09003 * 109.26988 * 49.37679 * 24 13 2 38 38 H 1.09010 * 109.26647 * 168.87676 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.4969 -0.3971 1.4569 6 1 3.9849 0.3270 0.8213 7 6 4.2069 -1.0247 2.4584 8 7 5.4783 -0.7414 2.6400 9 14 3.3626 -2.2766 3.5582 10 1 3.4926 -3.6291 2.9592 11 1 3.9994 -2.2660 4.8997 12 1 1.9248 -1.9296 3.6901 13 7 2.0197 -0.6925 -1.1995 14 6 1.3699 -0.1701 -2.4122 15 6 1.5192 1.3515 -2.4253 16 6 2.9598 1.7291 -2.1932 17 6 3.3662 3.0182 -2.5144 18 9 2.4769 3.8943 -3.0308 19 6 4.6772 3.4071 -2.3136 20 6 5.5886 2.5069 -1.7884 21 9 6.8715 2.8806 -1.5891 22 6 5.1829 1.2244 -1.4692 23 6 3.8679 0.8328 -1.6726 24 6 3.4769 -0.5772 -1.3147 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.4676 -0.3938 2.1170 29 1 1.9219 -1.7974 1.1211 30 1 5.9778 -1.1833 3.3444 31 1 0.3125 -0.4343 -2.4039 32 1 1.8491 -0.5927 -3.2954 33 1 0.9008 1.7826 -1.6380 34 1 1.1947 1.7386 -3.3912 35 1 4.9895 4.4100 -2.5648 36 1 5.8945 0.5230 -1.0591 37 1 3.9354 -0.8473 -0.3634 38 1 3.8312 -1.2562 -2.0904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411318578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:57 Heat of formation + Delta-G solvation = -59.117766 kcal Electronic energy + Delta-G solvation = -23018.685543 eV Core-core repulsion = 19496.960096 eV Total energy + Delta-G solvation = -3521.725447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.83714 -48.67977 -40.20465 -37.17659 -33.65837 -32.11307 -31.93410 -29.97707 -28.93974 -27.50569 -24.50290 -23.58064 -22.33169 -22.03205 -20.84870 -18.50977 -17.53120 -17.03666 -16.82373 -15.86360 -15.76042 -15.58986 -15.17857 -14.93568 -14.51805 -14.31435 -14.07973 -13.64863 -13.57256 -12.97730 -12.52636 -12.26806 -12.18431 -11.81770 -11.80965 -11.62113 -11.56372 -11.26383 -11.12889 -10.80180 -10.74677 -10.53798 -10.20930 -9.89130 -9.41275 -9.07219 -8.62678 -8.40885 -8.26065 -7.75333 -6.12237 -4.07504 1.24426 1.29302 3.28703 3.37039 3.41082 3.61990 4.10298 4.40691 4.42361 4.69733 4.83358 4.87192 5.15959 5.20180 5.23410 5.36293 5.55812 5.60494 5.73424 5.81917 5.91146 6.01891 6.07811 6.09992 6.14260 6.21639 6.28468 6.33224 6.41823 6.51614 6.66181 6.75476 7.01713 7.15295 7.20873 7.28438 7.63103 7.78570 7.87009 8.44855 8.89285 9.49706 10.98502 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.007489 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.461004 B = 3738.072888 C = 5010.392249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.086 3.914 3 H 0.042 0.958 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.085 0.915 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.879 3.121 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.510 5.510 14 C 0.048 3.952 15 C -0.113 4.113 16 C -0.128 4.128 17 C 0.120 3.880 18 F -0.138 7.138 19 C -0.205 4.205 20 C 0.124 3.876 21 F -0.135 7.135 22 C -0.143 4.143 23 C -0.026 4.026 24 C 0.049 3.951 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.169 0.831 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 3.592 -10.557 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 H 0.060 0.940 4 C -0.047 4.047 5 C -0.564 4.564 6 H 0.102 0.898 7 C -0.132 4.132 8 N -0.533 5.533 9 Si 0.706 3.294 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.191 1.191 13 N -0.232 5.232 14 C -0.081 4.081 15 C -0.152 4.152 16 C -0.129 4.129 17 C 0.100 3.900 18 F -0.116 7.116 19 C -0.224 4.224 20 C 0.105 3.895 21 F -0.114 7.114 22 C -0.162 4.162 23 C -0.028 4.028 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.333 3.070 -10.389 12.075 hybrid contribution 0.090 0.764 0.511 0.924 sum -5.243 3.834 -9.878 11.822 Atomic orbital electron populations 1.22035 0.96369 1.01749 1.00681 1.21685 0.92912 0.96524 0.91013 0.93981 1.19664 0.96997 0.96304 0.91734 1.21260 0.93561 1.24859 1.16672 0.89751 1.25024 0.94679 0.96630 0.96820 1.69906 1.07936 1.42820 1.32680 0.86786 0.80358 0.82160 0.80056 1.20197 1.21667 1.19119 1.62653 1.04467 1.54583 1.01466 1.22284 1.00521 0.90927 0.94360 1.21058 0.91855 0.99757 1.02516 1.19596 0.97537 0.92268 1.03544 1.17178 0.86388 0.87286 0.99101 1.91457 1.67528 1.68253 1.84371 1.20784 0.92403 1.01437 1.07822 1.17205 0.78825 0.93469 1.00026 1.91500 1.35198 1.91849 1.92841 1.21266 0.97628 0.95250 1.02103 1.20297 0.91513 0.98443 0.92543 1.22338 0.89272 0.88692 1.07491 0.92709 0.93402 0.92314 0.96329 0.95534 0.92623 0.90136 0.91061 0.89905 0.90773 0.84175 0.83444 0.81485 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.32 37.16 0.31 -2.03 16 2 C 0.09 1.62 1.56 -67.71 -0.11 1.51 16 3 H 0.04 0.86 5.77 -51.93 -0.30 0.56 16 4 C -0.01 -0.21 3.61 -27.88 -0.10 -0.31 16 5 C -0.53 -13.45 6.96 -34.44 -0.24 -13.69 16 6 H 0.08 2.26 5.45 -52.49 -0.29 1.97 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -25.60 13.96 55.43 0.77 -24.83 16 9 Si 0.88 20.79 27.36 -169.99 -4.65 16.14 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.14 6.70 56.52 0.38 -5.77 16 13 N -0.51 -8.87 4.88 -228.19 -1.11 -9.99 16 14 C 0.05 0.67 5.40 -3.73 -0.02 0.65 16 15 C -0.11 -1.62 4.66 -27.93 -0.13 -1.75 16 16 C -0.13 -2.10 5.06 -104.51 -0.53 -2.63 16 17 C 0.12 1.91 7.23 -39.33 -0.28 1.63 16 18 F -0.14 -2.10 16.56 2.25 0.04 -2.06 16 19 C -0.20 -3.19 10.01 -39.51 -0.40 -3.59 16 20 C 0.12 2.11 7.30 -39.50 -0.29 1.82 16 21 F -0.14 -2.32 17.27 2.25 0.04 -2.28 16 22 C -0.14 -2.56 9.22 -39.40 -0.36 -2.93 16 23 C -0.03 -0.46 4.45 -104.64 -0.47 -0.92 16 24 C 0.05 0.89 5.01 -5.16 -0.03 0.87 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.64 5.32 -51.93 -0.28 0.36 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.02 0.42 7.48 -51.93 -0.39 0.03 16 29 H 0.03 0.60 7.26 -51.92 -0.38 0.22 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.08 1.02 6.70 -51.93 -0.35 0.67 16 32 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 33 H 0.08 1.22 5.80 -51.93 -0.30 0.92 16 34 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 35 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.15 2.70 8.06 -52.48 -0.42 2.27 16 37 H 0.17 3.66 4.03 -51.93 -0.21 3.45 16 38 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -27.15 297.85 -7.75 -34.90 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.59 Total: 3.18 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.74 Total: -19.56 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.34 Total: -34.81 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.65 Total: 16.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.15 -7.75 -34.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411318578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.217 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds