Wall clock time and date at job start Tue Mar 31 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46837 * 240.00053 * 2 1 3 5 5 C 1.50703 * 109.46956 * 170.19077 * 4 2 1 6 6 H 1.07993 * 120.00243 * 354.27138 * 5 4 2 7 7 C 1.37877 * 119.99653 * 174.26942 * 5 4 2 8 8 N 1.31512 * 119.99791 * 173.14750 * 7 5 4 9 9 Si 1.86803 * 120.00214 * 353.13901 * 7 5 4 10 10 H 1.48507 * 109.46764 * 90.00206 * 9 7 5 11 11 H 1.48498 * 109.46950 * 210.00071 * 9 7 5 12 12 H 1.48499 * 109.47101 * 330.00402 * 9 7 5 13 13 N 1.46895 * 109.47242 * 120.00227 * 2 1 3 14 14 C 1.47089 * 110.99921 * 192.70980 * 13 2 1 15 15 C 1.52899 * 108.48039 * 52.19022 * 14 13 2 16 16 C 1.50729 * 109.94735 * 50.44384 * 15 14 13 17 17 C 1.38918 * 118.45804 * 163.23238 * 16 15 14 18 18 F 1.35100 * 119.83299 * 359.59000 * 17 16 15 19 19 C 1.38217 * 120.32991 * 179.61933 * 17 16 15 20 20 C 1.38447 * 119.77018 * 359.97438 * 19 17 16 21 21 F 1.35101 * 120.07333 * 180.11624 * 20 19 17 22 22 C 1.38245 * 119.84544 * 0.08942 * 20 19 17 23 23 C 1.37818 * 121.66357 * 342.98916 * 16 15 14 24 24 C 1.46623 * 111.00307 * 315.76583 * 13 2 1 25 25 H 1.09005 * 109.46869 * 300.00296 * 1 2 3 26 26 H 1.09001 * 109.47545 * 59.99508 * 1 2 3 27 27 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47009 * 290.19581 * 4 2 1 29 29 H 1.09005 * 109.46931 * 50.19786 * 4 2 1 30 30 H 0.97004 * 119.99957 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.64948 * 292.49032 * 14 13 2 32 32 H 1.09002 * 109.80503 * 171.98314 * 14 13 2 33 33 H 1.08993 * 109.39307 * 290.29506 * 15 14 13 34 34 H 1.09001 * 109.31552 * 170.53652 * 15 14 13 35 35 H 1.08001 * 120.11366 * 179.97438 * 19 17 16 36 36 H 1.07997 * 119.79291 * 179.97438 * 22 20 19 37 37 H 1.08998 * 109.27176 * 168.79754 * 24 13 2 38 38 H 1.09002 * 109.26490 * 49.29241 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5274 -0.5151 -1.3764 6 1 4.0411 0.1460 -0.6943 7 6 4.2323 -1.1707 -2.3634 8 7 5.5018 -0.8902 -2.5615 9 14 3.3843 -2.4574 -3.4192 10 1 2.7968 -1.8057 -4.6174 11 1 4.3746 -3.4782 -3.8464 12 1 2.3072 -3.1112 -2.6332 13 7 2.0197 -0.6925 1.1994 14 6 3.4583 -0.4561 1.3941 15 6 3.7110 1.0514 1.3576 16 6 2.7606 1.7550 2.2922 17 6 3.0498 3.0596 2.6718 18 9 4.1668 3.6623 2.2089 19 6 2.2007 3.7439 3.5211 20 6 1.0565 3.1249 3.9946 21 9 0.2211 3.7889 4.8232 22 6 0.7705 1.8261 3.6173 23 6 1.6232 1.1380 2.7667 24 6 1.2702 -0.2768 2.3890 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8265 -1.7869 -1.1661 29 1 1.5408 -0.3184 -2.1306 30 1 5.9977 -1.3512 -3.2562 31 1 4.0208 -0.9411 0.5962 32 1 3.7712 -0.8566 2.3584 33 1 3.5594 1.4193 0.3429 34 1 4.7370 1.2526 1.6659 35 1 2.4291 4.7580 3.8142 36 1 -0.1221 1.3439 3.9875 37 1 1.5133 -0.9416 3.2179 38 1 0.2020 -0.3376 2.1806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411318580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:00 Heat of formation + Delta-G solvation = -50.568959 kcal Electronic energy + Delta-G solvation = -22782.737995 eV Core-core repulsion = 19261.383252 eV Total energy + Delta-G solvation = -3521.354743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.03363 -48.89324 -40.34576 -37.35852 -33.34197 -32.75878 -31.72727 -30.04866 -29.16232 -27.37613 -24.91835 -23.17720 -22.71707 -22.10038 -20.93728 -18.53193 -17.67066 -17.22919 -16.90411 -16.00942 -15.83429 -15.79941 -15.30678 -14.88810 -14.68785 -14.45645 -14.20985 -13.89773 -13.56819 -13.09272 -12.61205 -12.30043 -12.07089 -11.98055 -11.90251 -11.67663 -11.56139 -11.37825 -11.15894 -10.82777 -10.76717 -10.41935 -10.12937 -9.70847 -9.41189 -8.98922 -8.81881 -8.50654 -8.42825 -7.68839 -6.04840 -4.00336 0.97238 0.99699 3.32010 3.33139 3.40590 3.45432 3.86062 4.31000 4.46590 4.49446 4.67265 4.78475 4.84773 5.05059 5.28564 5.41867 5.59044 5.64708 5.67954 5.74064 5.79597 5.87388 5.89531 5.96222 5.96586 6.06323 6.19287 6.32145 6.48289 6.57952 6.67052 6.76069 6.84206 7.10677 7.17725 7.32187 7.68241 7.81341 7.87442 8.50774 8.96563 9.57743 11.06090 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.005429 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.654453 B = 5156.250476 C = 5831.608563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.084 3.916 3 H 0.045 0.955 4 C -0.010 4.010 5 C -0.528 4.528 6 H 0.091 0.909 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.508 5.508 14 C 0.043 3.957 15 C -0.121 4.121 16 C -0.105 4.105 17 C 0.126 3.874 18 F -0.129 7.129 19 C -0.198 4.198 20 C 0.116 3.884 21 F -0.137 7.137 22 C -0.162 4.162 23 C -0.053 4.053 24 C 0.076 3.924 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.014 0.986 30 H 0.262 0.738 31 H 0.139 0.861 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 4.829 12.086 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.047 4.047 5 C -0.565 4.565 6 H 0.109 0.891 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.229 5.229 14 C -0.084 4.084 15 C -0.159 4.159 16 C -0.106 4.106 17 C 0.107 3.893 18 F -0.107 7.107 19 C -0.218 4.218 20 C 0.096 3.904 21 F -0.116 7.116 22 C -0.181 4.181 23 C -0.055 4.055 24 C -0.052 4.052 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.107 0.893 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.517 4.287 11.889 15.240 hybrid contribution -0.131 0.737 -0.335 0.820 sum -8.648 5.024 11.554 15.281 Atomic orbital electron populations 1.22090 0.96661 1.01703 1.00683 1.21740 0.92637 0.96697 0.91325 0.93725 1.19653 0.97180 0.96579 0.91327 1.21473 0.91297 1.27801 1.15909 0.89104 1.24995 0.94752 0.96804 0.96635 1.69918 1.08687 1.42212 1.33156 0.86838 0.79772 0.82334 0.80867 1.20654 1.21650 1.18784 1.62627 1.03654 1.55667 1.00944 1.22750 0.89350 0.92661 1.03613 1.21260 0.97119 0.98553 0.98999 1.20002 0.97582 0.92861 1.00197 1.17306 0.84382 0.91209 0.96414 1.91522 1.49189 1.83047 1.86931 1.20890 0.95838 1.02244 1.02784 1.17136 0.89269 0.91044 0.92911 1.91499 1.70111 1.80574 1.69423 1.21100 1.02163 0.93333 1.01526 1.20351 0.92321 0.98554 0.94309 1.21515 1.00511 0.88318 0.94901 0.93454 0.92616 0.92239 0.95147 0.96778 0.92798 0.84386 0.92504 0.87493 0.90359 0.83884 0.84345 0.89341 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.37 37.16 0.31 -2.05 16 2 C 0.08 1.55 1.87 -67.71 -0.13 1.42 16 3 H 0.04 0.89 5.14 -51.93 -0.27 0.62 16 4 C -0.01 -0.22 3.78 -27.88 -0.11 -0.32 16 5 C -0.53 -13.53 7.27 -34.44 -0.25 -13.78 16 6 H 0.09 2.37 3.80 -52.49 -0.20 2.17 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 9 Si 0.87 20.99 27.65 -169.99 -4.70 16.29 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -6.14 6.35 56.52 0.36 -5.78 16 13 N -0.51 -8.79 4.87 -228.27 -1.11 -9.90 16 14 C 0.04 0.79 5.35 -3.77 -0.02 0.77 16 15 C -0.12 -2.15 4.16 -27.92 -0.12 -2.26 16 16 C -0.11 -1.65 5.19 -104.51 -0.54 -2.20 16 17 C 0.13 1.91 7.23 -39.34 -0.28 1.62 16 18 F -0.13 -2.05 16.56 2.25 0.04 -2.02 16 19 C -0.20 -2.61 10.01 -39.51 -0.40 -3.00 16 20 C 0.12 1.48 7.30 -39.50 -0.29 1.20 16 21 F -0.14 -1.72 17.27 2.25 0.04 -1.69 16 22 C -0.16 -1.99 9.62 -39.40 -0.38 -2.37 16 23 C -0.05 -0.74 5.35 -104.63 -0.56 -1.30 16 24 C 0.08 1.05 5.06 -5.16 -0.03 1.02 16 25 H 0.05 0.64 6.06 -51.93 -0.31 0.32 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.71 6.57 -51.93 -0.34 0.36 16 29 H 0.01 0.32 7.99 -51.93 -0.42 -0.10 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.14 3.01 5.07 -51.93 -0.26 2.75 16 32 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.11 2.18 4.96 -51.93 -0.26 1.92 16 34 H 0.08 1.36 7.94 -51.93 -0.41 0.95 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.19 5.48 -51.93 -0.28 0.91 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -27.64 296.82 -7.83 -35.47 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.46 Total: 2.31 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.88 Total: -19.46 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.34 Total: -35.39 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.70 Total: 16.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.64 -7.83 -35.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411318580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.099 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds