Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46774 * 2 1 4 4 N 1.46901 * 109.46993 * 240.00302 * 2 1 3 5 5 C 1.46905 * 111.00031 * 87.59616 * 4 2 1 6 6 C 1.52999 * 109.47377 * 184.32390 * 5 4 2 7 7 C 1.50698 * 115.55204 * 276.38956 * 6 5 4 8 8 H 1.08000 * 119.99884 * 114.47192 * 7 6 5 9 9 C 1.37881 * 119.99590 * 294.47780 * 7 6 5 10 10 N 1.31515 * 120.00086 * 353.18571 * 9 7 6 11 11 Si 1.86800 * 119.99819 * 173.19205 * 9 7 6 12 12 H 1.48504 * 109.47121 * 89.99423 * 11 9 7 13 13 H 1.48492 * 109.47293 * 209.99598 * 11 9 7 14 14 H 1.48498 * 109.47120 * 329.99975 * 11 9 7 15 15 C 1.53001 * 117.49918 * 130.67615 * 6 5 4 16 16 C 1.53001 * 60.00290 * 252.51158 * 15 6 5 17 17 C 1.50696 * 109.47544 * 120.00037 * 2 1 3 18 18 C 1.38210 * 119.99750 * 93.94809 * 17 2 1 19 19 C 1.38427 * 119.99813 * 179.77231 * 18 17 2 20 20 F 1.35104 * 120.00165 * 180.27521 * 19 18 17 21 21 C 1.38473 * 119.99983 * 0.52398 * 19 18 17 22 22 C 1.38165 * 119.99942 * 359.72846 * 21 19 18 23 23 C 1.38419 * 120.00283 * 274.22221 * 17 2 1 24 24 F 1.35108 * 120.00075 * 359.97438 * 23 17 2 25 25 H 1.08997 * 109.46795 * 299.99274 * 1 2 3 26 26 H 1.08996 * 109.47635 * 60.00036 * 1 2 3 27 27 H 1.09000 * 109.46774 * 180.02562 * 1 2 3 28 28 H 1.00896 * 111.00206 * 323.64454 * 4 2 1 29 29 H 1.09002 * 109.46925 * 304.32321 * 5 4 2 30 30 H 1.08999 * 109.47387 * 64.32091 * 5 4 2 31 31 H 0.96997 * 119.99994 * 185.00577 * 10 9 7 32 32 H 1.08999 * 117.49756 * 0.02562 * 15 6 5 33 33 H 1.09006 * 117.49758 * 145.02264 * 15 6 5 34 34 H 1.08999 * 117.50248 * 252.51371 * 16 15 6 35 35 H 1.09006 * 117.51346 * 107.47829 * 16 15 6 36 36 H 1.07997 * 119.99906 * 0.02562 * 18 17 2 37 37 H 1.07998 * 119.99889 * 179.70501 * 21 19 18 38 38 H 1.07995 * 119.99828 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.1409 0.2365 -2.3310 6 6 2.5485 -0.5384 -3.5857 7 6 4.0250 -0.7991 -3.7377 8 1 4.4013 -1.8107 -3.7009 9 6 4.8954 0.2540 -3.9236 10 7 4.4276 1.4701 -4.1023 11 14 6.7390 -0.0466 -3.9216 12 1 7.1938 -0.3426 -5.3040 13 1 7.4374 1.1637 -3.4192 14 1 7.0515 -1.2001 -3.0402 15 6 1.7388 -0.2946 -4.8608 16 6 1.5854 -1.6116 -4.0973 17 6 2.0324 -0.7104 1.2304 18 6 2.3405 -2.0565 1.1737 19 6 2.8065 -2.7080 2.3027 20 9 3.1130 -4.0226 2.2459 21 6 2.9537 -2.0135 3.4916 22 6 2.6407 -0.6690 3.5496 23 6 2.1800 -0.0161 2.4187 24 9 1.8741 1.2987 2.4755 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.4250 -1.4729 -1.4346 29 1 1.1829 0.7274 -2.5024 30 1 2.8984 0.9871 -2.1054 31 1 5.0351 2.1985 -4.3052 32 1 0.9160 0.4182 -4.8059 33 1 2.2741 -0.3225 -5.8100 34 1 2.0197 -2.5059 -4.5440 35 1 0.6615 -1.7657 -3.5397 36 1 2.2216 -2.5991 0.2476 37 1 3.3127 -2.5229 4.3736 38 1 2.7551 -0.1275 4.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429778757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = -43.492417 kcal Electronic energy + Delta-G solvation = -21954.500148 eV Core-core repulsion = 18433.452267 eV Total energy + Delta-G solvation = -3521.047881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.85263 -48.83813 -39.14515 -37.26373 -35.35694 -31.95767 -31.16888 -30.15436 -28.73859 -25.75411 -24.61213 -23.78339 -22.36957 -21.24144 -20.47278 -19.06789 -17.66410 -17.17269 -17.03071 -16.16600 -15.80280 -15.26522 -14.77814 -14.55883 -14.47511 -14.24285 -14.13505 -13.83909 -13.44752 -13.07118 -12.86455 -12.61600 -12.49189 -12.01976 -11.74490 -11.62805 -11.22163 -11.09560 -10.91244 -10.75281 -10.67735 -10.45432 -10.22420 -9.39043 -9.01784 -8.93573 -8.51111 -8.46843 -8.09889 -7.66942 -5.98448 -4.00741 0.99459 1.10482 3.33039 3.40483 3.41139 3.45731 4.20589 4.21100 4.45023 4.49565 4.60063 4.88707 5.04454 5.21148 5.25056 5.32815 5.40733 5.46945 5.65477 5.82859 5.89530 5.99030 6.05290 6.09625 6.14156 6.16934 6.32881 6.37412 6.50739 6.60784 6.69053 6.84210 6.89176 7.07046 7.39273 7.61661 7.82913 7.96452 8.05944 8.50116 8.96942 9.61978 11.10161 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.005321 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.026086 B = 5260.461376 C = 5650.022643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 H 0.092 0.908 4 N -0.668 5.668 5 C 0.108 3.892 6 C 0.058 3.942 7 C -0.477 4.477 8 H 0.059 0.941 9 C 0.069 3.931 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.175 4.175 16 C -0.211 4.211 17 C -0.063 4.063 18 C -0.097 4.097 19 C 0.086 3.914 20 F -0.138 7.138 21 C -0.137 4.137 22 C -0.129 4.129 23 C 0.086 3.914 24 F -0.136 7.136 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.332 0.668 29 H 0.001 0.999 30 H 0.087 0.913 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -3.866 13.478 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 H 0.110 0.890 4 N -0.298 5.298 5 C -0.019 4.019 6 C 0.057 3.943 7 C -0.515 4.515 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.522 5.522 11 Si 0.716 3.284 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.214 4.214 16 C -0.249 4.249 17 C -0.064 4.064 18 C -0.116 4.116 19 C 0.066 3.934 20 F -0.117 7.117 21 C -0.156 4.156 22 C -0.148 4.148 23 C 0.066 3.934 24 F -0.114 7.114 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.019 0.981 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.129 -3.593 13.674 15.409 hybrid contribution 0.124 0.108 -0.323 0.363 sum -6.005 -3.485 13.351 15.048 Atomic orbital electron populations 1.22450 0.96177 1.02203 1.02447 1.20361 0.92486 0.97815 0.88657 0.88985 1.60526 1.53978 1.11169 1.04156 1.21590 0.97294 0.94033 0.89031 1.18841 0.92145 0.94005 0.89321 1.20397 0.89052 0.92811 1.49251 0.92328 1.24926 0.98414 0.95047 0.94889 1.69958 1.34681 0.99984 1.47606 0.86646 0.85809 0.77805 0.78114 1.20901 1.21291 1.19733 1.22750 1.02586 0.97014 0.99017 1.22843 1.01208 0.93729 1.07089 1.19871 0.98910 0.93638 0.94017 1.20941 0.98541 0.94085 0.98062 1.17718 1.02053 0.78580 0.95024 1.91504 1.90857 1.32241 1.97079 1.20881 1.03046 0.94215 0.97431 1.20854 1.01417 0.94501 0.98037 1.17538 1.02743 0.78499 0.94593 1.91492 1.90824 1.32166 1.96960 0.92294 0.91763 0.92304 0.84908 0.98108 0.89431 0.93117 0.92101 0.90244 0.90495 0.92026 0.82999 0.84231 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.14 37.16 0.34 -1.95 16 2 C 0.12 1.85 2.59 -68.86 -0.18 1.67 16 3 H 0.09 1.59 7.44 -51.93 -0.39 1.20 16 4 N -0.67 -12.27 5.26 -107.95 -0.57 -12.84 16 5 C 0.11 2.37 5.33 -3.82 -0.02 2.35 16 6 C 0.06 1.37 1.50 -155.66 -0.23 1.14 16 7 C -0.48 -12.87 8.83 -34.44 -0.30 -13.17 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.07 1.89 5.25 -17.82 -0.09 1.80 16 10 N -0.88 -24.85 12.56 55.43 0.70 -24.15 16 11 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.18 -3.99 9.88 -26.73 -0.26 -4.26 16 16 C -0.21 -4.39 9.39 -26.73 -0.25 -4.64 16 17 C -0.06 -0.92 5.06 -104.57 -0.53 -1.45 16 18 C -0.10 -1.40 9.30 -39.52 -0.37 -1.77 16 19 C 0.09 1.14 7.30 -39.42 -0.29 0.85 16 20 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 21 C -0.14 -1.53 10.02 -39.52 -0.40 -1.92 16 22 C -0.13 -1.46 10.02 -39.52 -0.40 -1.85 16 23 C 0.09 1.18 7.24 -39.43 -0.29 0.89 16 24 F -0.14 -1.93 16.55 2.25 0.04 -1.90 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.87 7.57 -51.93 -0.39 0.48 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.33 5.64 7.05 -39.29 -0.28 5.37 16 29 H 0.00 0.02 7.31 -51.93 -0.38 -0.36 16 30 H 0.09 2.21 7.23 -51.93 -0.38 1.83 16 31 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 32 H 0.06 1.31 8.06 -51.93 -0.42 0.89 16 33 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.06 1.13 7.81 -51.93 -0.41 0.72 16 36 H 0.15 2.21 6.98 -52.49 -0.37 1.85 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -27.92 327.61 -8.23 -36.15 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.08 Total: 5.62 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.27 Total: -22.31 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.13 Total: -36.99 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.92 -8.23 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429778757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.340 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds