Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46945 * 2 1 4 4 N 1.46904 * 109.47079 * 119.99654 * 2 1 3 5 5 C 1.46894 * 111.00116 * 278.07748 * 4 2 1 6 6 C 1.52998 * 109.47443 * 184.22185 * 5 4 2 7 7 C 1.50705 * 115.55084 * 277.30523 * 6 5 4 8 8 H 1.07998 * 119.99508 * 114.43338 * 7 6 5 9 9 C 1.37875 * 119.99522 * 294.43538 * 7 6 5 10 10 N 1.31507 * 120.00158 * 354.00520 * 9 7 6 11 11 Si 1.86803 * 119.99670 * 174.00827 * 9 7 6 12 12 H 1.48504 * 109.47105 * 89.99916 * 11 9 7 13 13 H 1.48499 * 109.47176 * 209.99838 * 11 9 7 14 14 H 1.48497 * 109.47070 * 330.00025 * 11 9 7 15 15 C 1.52996 * 117.49862 * 131.58875 * 6 5 4 16 16 C 1.53001 * 60.00412 * 252.51656 * 15 6 5 17 17 C 1.50700 * 109.46784 * 239.99803 * 2 1 3 18 18 C 1.38205 * 119.99955 * 266.78827 * 17 2 1 19 19 C 1.38430 * 119.99738 * 179.97438 * 18 17 2 20 20 F 1.35100 * 119.99528 * 180.02562 * 19 18 17 21 21 C 1.38471 * 120.00208 * 359.97438 * 19 18 17 22 22 C 1.38160 * 119.99819 * 0.02562 * 21 19 18 23 23 C 1.38433 * 119.99980 * 87.03638 * 17 2 1 24 24 F 1.35098 * 120.00049 * 0.05410 * 23 17 2 25 25 H 1.09002 * 109.47321 * 60.00168 * 1 2 3 26 26 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46799 * 300.00211 * 1 2 3 28 28 H 1.00900 * 110.99675 * 154.12472 * 4 2 1 29 29 H 1.08998 * 109.47634 * 304.22643 * 5 4 2 30 30 H 1.09003 * 109.47070 * 64.22179 * 5 4 2 31 31 H 0.97001 * 120.00102 * 185.01030 * 10 9 7 32 32 H 1.09000 * 117.50445 * 0.02562 * 15 6 5 33 33 H 1.09007 * 117.49417 * 145.02288 * 15 6 5 34 34 H 1.09004 * 117.49893 * 252.51812 * 16 15 6 35 35 H 1.08992 * 117.52141 * 107.47926 * 16 15 6 36 36 H 1.07994 * 120.00031 * 359.96987 * 18 17 2 37 37 H 1.07996 * 119.99911 * 180.02562 * 21 19 18 38 38 H 1.07999 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0135 0.2032 2.3638 6 6 2.6264 -0.5184 3.5657 7 6 1.6922 -1.4245 4.3255 8 1 1.8654 -2.4905 4.3381 9 6 0.6166 -0.8926 5.0046 10 7 0.4717 0.4118 5.0883 11 14 -0.6347 -2.0248 5.8057 12 1 -0.2162 -2.3173 7.2002 13 1 -1.9646 -1.3642 5.8163 14 1 -0.7179 -3.2929 5.0376 15 6 3.6959 0.2267 4.3669 16 6 4.0931 -0.9419 3.4627 17 6 2.0323 -0.7105 -1.2305 18 6 2.3258 -2.0600 -1.1778 19 6 2.7866 -2.7126 -2.3082 20 9 3.0731 -4.0319 -2.2568 21 6 2.9530 -2.0136 -3.4919 22 6 2.6596 -0.6645 -3.5445 23 6 2.2045 -0.0103 -2.4122 24 9 1.9234 1.3102 -2.4621 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9393 -1.0776 1.0445 29 1 2.5978 1.0955 2.1390 30 1 0.9878 0.4897 2.5964 31 1 -0.2431 0.7868 5.6263 32 1 3.9626 1.2311 4.0381 33 1 3.7238 0.0617 5.4440 34 1 4.3823 -1.8757 3.9449 35 1 4.6211 -0.7068 2.5386 36 1 2.1957 -2.6052 -0.2547 37 1 3.3122 -2.5229 -4.3739 38 1 2.7898 -0.1192 -4.4676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429778758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = -42.948685 kcal Electronic energy + Delta-G solvation = -21917.256049 eV Core-core repulsion = 18396.231745 eV Total energy + Delta-G solvation = -3521.024303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.97285 -48.94900 -39.28180 -37.21019 -35.29923 -31.95874 -31.18449 -30.28285 -28.76920 -25.84237 -24.73079 -23.69822 -22.40863 -21.20385 -20.25745 -19.04751 -17.76905 -17.26875 -17.17228 -16.18490 -15.93235 -15.37664 -15.06438 -14.53921 -14.50171 -14.38703 -14.08008 -13.72533 -13.48521 -13.14486 -12.92099 -12.58622 -12.15515 -11.90340 -11.72218 -11.63363 -11.41263 -11.02734 -10.91848 -10.76770 -10.52740 -10.40715 -10.20595 -9.39626 -9.17533 -8.90582 -8.59373 -8.50529 -8.09488 -7.67375 -5.98053 -4.00623 0.84998 0.94713 3.27091 3.32817 3.40150 3.44986 4.07338 4.08459 4.43528 4.45833 4.46982 4.80714 4.94001 5.08836 5.25065 5.44036 5.47903 5.64472 5.70476 5.77787 5.91919 5.95071 6.04725 6.12014 6.18081 6.29500 6.35511 6.50175 6.60047 6.63038 6.69933 6.72935 6.91388 7.07954 7.39916 7.62697 7.84795 7.96789 8.07127 8.50616 8.97071 9.62042 11.10548 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.004713 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.105854 B = 5939.817463 C = 6150.204726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.122 3.878 3 H 0.051 0.949 4 N -0.669 5.669 5 C 0.106 3.894 6 C 0.058 3.942 7 C -0.476 4.476 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.885 5.885 11 Si 0.889 3.111 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.176 4.176 16 C -0.212 4.212 17 C -0.082 4.082 18 C -0.109 4.109 19 C 0.089 3.911 20 F -0.136 7.136 21 C -0.134 4.134 22 C -0.128 4.128 23 C 0.089 3.911 24 F -0.134 7.134 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.332 0.668 29 H -0.002 1.002 30 H 0.091 0.909 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.162 0.838 37 H 0.142 0.858 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 -1.306 -16.192 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.069 0.931 4 N -0.300 5.300 5 C -0.022 4.022 6 C 0.057 3.943 7 C -0.513 4.513 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.523 5.523 11 Si 0.717 3.283 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.214 4.214 16 C -0.249 4.249 17 C -0.083 4.083 18 C -0.128 4.128 19 C 0.069 3.931 20 F -0.115 7.115 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.069 3.931 24 F -0.112 7.112 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.016 0.984 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.702 -1.431 -16.008 16.298 hybrid contribution 0.165 0.114 0.287 0.350 sum 2.867 -1.316 -15.721 16.034 Atomic orbital electron populations 1.21736 0.93043 1.02746 1.01473 1.20401 0.96661 0.95031 0.86718 0.93086 1.60637 1.30700 1.36587 1.02117 1.21622 1.02199 0.90362 0.87968 1.18847 0.85609 0.96450 0.93381 1.20389 1.08318 0.92544 1.30096 0.92333 1.24920 0.97272 0.94884 0.96175 1.69956 1.32619 1.10178 1.39518 0.86643 0.81065 0.81155 0.79464 1.20940 1.21303 1.19757 1.22753 1.07839 0.93372 0.97460 1.22844 1.02701 0.99040 1.00341 1.20052 0.99332 0.93928 0.95002 1.21141 0.98632 0.93981 0.99000 1.17714 1.01944 0.78441 0.94989 1.91518 1.91201 1.31675 1.97060 1.20928 1.02757 0.94102 0.97531 1.20891 1.01373 0.94473 0.97974 1.17562 1.02532 0.78369 0.94624 1.91502 1.91320 1.31474 1.96948 0.93282 0.91703 0.91266 0.84962 0.98374 0.89073 0.93130 0.92105 0.90219 0.90464 0.92092 0.82095 0.84053 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.36 37.16 0.35 -1.75 16 2 C 0.12 1.97 2.61 -68.86 -0.18 1.79 16 3 H 0.05 0.86 7.37 -51.93 -0.38 0.48 16 4 N -0.67 -12.50 5.51 -107.95 -0.60 -13.09 16 5 C 0.11 2.35 5.35 -3.83 -0.02 2.33 16 6 C 0.06 1.39 1.50 -155.66 -0.23 1.15 16 7 C -0.48 -12.73 8.83 -34.44 -0.30 -13.03 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.07 1.88 5.26 -17.82 -0.09 1.78 16 10 N -0.89 -24.63 12.50 55.43 0.69 -23.94 16 11 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.18 -4.05 9.88 -26.73 -0.26 -4.32 16 16 C -0.21 -4.49 9.40 -26.73 -0.25 -4.74 16 17 C -0.08 -1.14 4.91 -104.56 -0.51 -1.66 16 18 C -0.11 -1.47 8.87 -39.52 -0.35 -1.82 16 19 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 20 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 21 C -0.13 -1.34 10.02 -39.52 -0.40 -1.74 16 22 C -0.13 -1.30 10.02 -39.53 -0.40 -1.70 16 23 C 0.09 1.13 7.24 -39.42 -0.29 0.85 16 24 F -0.13 -1.81 16.53 2.25 0.04 -1.77 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.21 7.34 -51.93 -0.38 0.83 16 28 H 0.33 5.89 6.70 -39.29 -0.26 5.63 16 29 H 0.00 -0.04 7.74 -51.93 -0.40 -0.44 16 30 H 0.09 2.27 6.42 -51.93 -0.33 1.94 16 31 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 36 H 0.16 2.32 7.12 -52.49 -0.37 1.95 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -27.46 326.69 -8.20 -35.66 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.05 Total: 5.91 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.23 Total: -22.05 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.10 Total: -37.03 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.46 -8.20 -35.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429778758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.288 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds