Wall clock time and date at job start Tue Mar 31 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47197 * 2 1 4 4 N 1.46904 * 109.47394 * 120.00005 * 2 1 3 5 5 C 1.46906 * 110.99974 * 273.62371 * 4 2 1 6 6 C 1.53001 * 109.47021 * 185.20611 * 5 4 2 7 7 C 1.50696 * 115.56409 * 268.77242 * 6 5 4 8 8 H 1.07994 * 120.00502 * 142.40358 * 7 6 5 9 9 C 1.37880 * 119.99755 * 322.40227 * 7 6 5 10 10 N 1.31519 * 120.00347 * 343.08655 * 9 7 6 11 11 Si 1.86802 * 119.99843 * 163.09166 * 9 7 6 12 12 H 1.48496 * 109.47210 * 89.99769 * 11 9 7 13 13 H 1.48502 * 109.47203 * 209.99985 * 11 9 7 14 14 H 1.48502 * 109.47116 * 329.99662 * 11 9 7 15 15 C 1.52997 * 117.49663 * 54.46416 * 6 5 4 16 16 C 1.53005 * 60.03274 * 107.47120 * 15 6 5 17 17 C 1.50697 * 109.47470 * 239.99699 * 2 1 3 18 18 C 1.38254 * 119.96733 * 285.28706 * 17 2 1 19 19 C 1.38214 * 120.06851 * 179.72354 * 18 17 2 20 20 C 1.38409 * 120.00356 * 0.54467 * 19 18 17 21 21 F 1.35101 * 120.03604 * 179.74929 * 20 19 18 22 22 C 1.38649 * 119.92630 * 359.72680 * 20 19 18 23 23 F 1.35105 * 120.03610 * 180.02562 * 22 20 19 24 24 C 1.38220 * 119.96049 * 105.55674 * 17 2 1 25 25 H 1.09002 * 109.47574 * 299.99966 * 1 2 3 26 26 H 1.09003 * 109.47564 * 59.99947 * 1 2 3 27 27 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.00902 * 111.00149 * 37.57034 * 4 2 1 29 29 H 1.09009 * 109.46821 * 65.20853 * 5 4 2 30 30 H 1.09002 * 109.47075 * 305.21173 * 5 4 2 31 31 H 0.96992 * 119.99986 * 185.02263 * 10 9 7 32 32 H 1.09000 * 117.49933 * 214.97720 * 15 6 5 33 33 H 1.08998 * 117.50176 * 359.97438 * 15 6 5 34 34 H 1.09004 * 117.49365 * 107.49538 * 16 15 6 35 35 H 1.09001 * 117.50020 * 252.51816 * 16 15 6 36 36 H 1.07997 * 119.96231 * 359.97438 * 18 17 2 37 37 H 1.08000 * 119.99765 * 180.27726 * 19 18 17 38 38 H 1.07994 * 120.00470 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1134 0.2302 2.3387 6 6 2.7469 -0.4922 3.5293 7 6 1.7814 -1.1663 4.4697 8 1 2.0363 -2.1159 4.9162 9 6 0.5723 -0.5705 4.7600 10 7 0.3894 0.7061 4.5018 11 14 -0.8059 -1.5764 5.5203 12 1 -0.7035 -1.5173 7.0005 13 1 -2.1162 -1.0240 5.0922 14 1 -0.6938 -2.9878 5.0723 15 6 4.1030 -1.1650 3.3073 16 6 4.0132 0.1190 4.1344 17 6 2.0323 -0.7104 -1.2304 18 6 1.9648 -2.0892 -1.3077 19 6 2.4197 -2.7425 -2.4375 20 6 2.9539 -2.0174 -3.4884 21 9 3.4035 -2.6557 -4.5910 22 6 3.0268 -0.6351 -3.4086 23 9 3.5473 0.0750 -4.4333 24 6 2.5652 0.0167 -2.2781 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.4363 -1.4848 1.4231 29 1 1.1154 0.5737 2.6112 30 1 2.7296 1.0862 2.0632 31 1 -0.4336 1.1424 4.7721 32 1 4.2967 -2.0953 3.8414 33 1 4.5436 -1.0934 2.3129 34 1 4.1479 0.0335 5.2127 35 1 4.3944 1.0355 3.6840 36 1 1.5525 -2.6559 -0.4860 37 1 2.3624 -3.8193 -2.4985 38 1 2.6218 1.0933 -2.2146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429786241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:53 Heat of formation + Delta-G solvation = -42.899370 kcal Electronic energy + Delta-G solvation = -21719.101170 eV Core-core repulsion = 18198.079005 eV Total energy + Delta-G solvation = -3521.022165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.44336 -48.52325 -39.35402 -37.10002 -35.15280 -32.23569 -31.13419 -30.42867 -28.48241 -25.76476 -24.53303 -23.37614 -23.00128 -21.08044 -20.41287 -19.07347 -17.93621 -17.08849 -16.79752 -16.28332 -16.20155 -15.10110 -14.94974 -14.75523 -14.45993 -14.29398 -14.03554 -13.90968 -13.65983 -13.02749 -12.81088 -12.65460 -12.22784 -11.93533 -11.58686 -11.48712 -11.30135 -11.19268 -10.95485 -10.80150 -10.74462 -10.42873 -10.17402 -9.28526 -9.08248 -9.02283 -8.66654 -8.56377 -8.19240 -7.49091 -6.12559 -4.12667 0.96421 1.02597 3.19277 3.28377 3.32685 3.40072 3.79231 4.28950 4.29907 4.49651 4.71562 4.90089 5.03549 5.10385 5.16132 5.35991 5.53797 5.63353 5.71781 5.80744 5.81576 6.04143 6.05168 6.15514 6.18704 6.37631 6.50496 6.50876 6.63768 6.77630 6.85633 6.94865 6.97246 7.13986 7.44846 7.53392 7.90249 7.93857 8.18026 8.45096 8.83562 9.43624 10.87656 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.004174 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.908294 B = 6706.078857 C = 6967.394803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 H 0.084 0.916 4 N -0.679 5.679 5 C 0.087 3.913 6 C 0.055 3.945 7 C -0.488 4.488 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.875 5.875 11 Si 0.884 3.116 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.272 1.272 15 C -0.192 4.192 16 C -0.204 4.204 17 C -0.032 4.032 18 C -0.078 4.078 19 C -0.126 4.126 20 C 0.052 3.948 21 F -0.136 7.136 22 C 0.064 3.936 23 F -0.134 7.134 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.342 0.658 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -2.356 -12.824 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.008 3.992 3 H 0.102 0.898 4 N -0.309 5.309 5 C -0.040 4.040 6 C 0.054 3.946 7 C -0.526 4.526 8 H 0.078 0.922 9 C -0.132 4.132 10 N -0.513 5.513 11 Si 0.712 3.288 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.229 4.229 16 C -0.243 4.243 17 C -0.034 4.034 18 C -0.096 4.096 19 C -0.145 4.145 20 C 0.032 3.968 21 F -0.114 7.114 22 C 0.044 3.956 23 F -0.113 7.113 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.105 0.895 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.965 -2.138 -13.098 13.306 hybrid contribution -1.309 -0.289 0.332 1.381 sum -0.344 -2.427 -12.766 12.999 Atomic orbital electron populations 1.22485 0.96164 1.02384 1.02470 1.20437 0.92743 0.97270 0.88729 0.89819 1.60628 1.55124 1.11129 1.04024 1.21748 1.03036 0.92093 0.87129 1.18879 0.85432 0.96422 0.93857 1.20613 0.99758 1.05662 1.26524 0.92216 1.24961 0.98334 0.94628 0.95315 1.69901 1.26577 1.08883 1.45923 0.86705 0.81678 0.80921 0.79512 1.20663 1.21111 1.19641 1.22692 1.05859 0.95253 0.99144 1.22982 1.08688 0.94818 0.97780 1.19952 0.95182 0.93667 0.94559 1.20959 0.97936 0.94033 0.96689 1.21078 0.99948 1.00919 0.92530 1.17662 1.04079 0.88916 0.86119 1.91496 1.87228 1.81722 1.50998 1.17619 1.02595 0.87956 0.87453 1.91503 1.84538 1.78095 1.57165 1.20955 1.00373 1.01245 0.91906 0.91194 0.92727 0.92368 0.83942 0.89451 0.94534 0.92839 0.91398 0.90777 0.90845 0.92069 0.84073 0.83966 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.10 37.15 0.34 -2.06 16 2 C 0.12 1.73 2.79 -68.87 -0.19 1.53 16 3 H 0.08 1.23 7.50 -51.93 -0.39 0.84 16 4 N -0.68 -11.91 5.56 -107.95 -0.60 -12.51 16 5 C 0.09 1.86 5.27 -3.82 -0.02 1.84 16 6 C 0.05 1.29 1.98 -155.62 -0.31 0.98 16 7 C -0.49 -12.51 9.00 -34.44 -0.31 -12.82 16 8 H 0.06 1.56 7.87 -52.49 -0.41 1.14 16 9 C 0.07 1.78 5.05 -17.82 -0.09 1.69 16 10 N -0.88 -22.79 11.06 55.43 0.61 -22.18 16 11 Si 0.88 19.65 29.57 -169.99 -5.03 14.62 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 C -0.19 -4.12 9.71 -26.73 -0.26 -4.38 16 16 C -0.20 -4.62 9.89 -26.69 -0.26 -4.88 16 17 C -0.03 -0.43 4.95 -104.62 -0.52 -0.94 16 18 C -0.08 -0.95 9.24 -39.58 -0.37 -1.32 16 19 C -0.13 -1.45 10.02 -39.53 -0.40 -1.85 16 20 C 0.05 0.68 7.31 -39.37 -0.29 0.40 16 21 F -0.14 -1.85 17.18 2.25 0.04 -1.81 16 22 C 0.06 0.85 7.31 -39.36 -0.29 0.56 16 23 F -0.13 -1.87 17.18 2.25 0.04 -1.83 16 24 C -0.13 -1.58 9.64 -39.52 -0.38 -1.96 16 25 H 0.07 1.10 7.65 -51.93 -0.40 0.70 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.34 6.11 8.00 -39.29 -0.31 5.79 16 29 H 0.09 2.06 4.84 -51.92 -0.25 1.81 16 30 H 0.04 0.78 7.66 -51.93 -0.40 0.38 16 31 H 0.26 6.54 8.32 -40.82 -0.34 6.20 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 35 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 36 H 0.14 1.62 7.48 -52.49 -0.39 1.23 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.14 1.56 8.00 -52.49 -0.42 1.14 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -26.02 327.17 -8.41 -34.42 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.06 Total: 7.57 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.34 Total: -23.21 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.01 Total: -34.69 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.08 Total: -3.64 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.02 -8.41 -34.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429786241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -26.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds