Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47145 * 2 1 4 4 N 1.46899 * 109.46546 * 239.99782 * 2 1 3 5 5 C 1.46898 * 111.00230 * 86.02842 * 4 2 1 6 6 C 1.52993 * 109.47637 * 185.13822 * 5 4 2 7 7 C 1.50707 * 115.55173 * 275.59572 * 6 5 4 8 8 H 1.08001 * 120.00191 * 114.44566 * 7 6 5 9 9 C 1.37874 * 119.99605 * 294.45243 * 7 6 5 10 10 N 1.31507 * 120.00572 * 353.16141 * 9 7 6 11 11 Si 1.86801 * 119.99841 * 173.16378 * 9 7 6 12 12 H 1.48507 * 109.47019 * 59.99605 * 11 9 7 13 13 H 1.48491 * 109.47325 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47399 * 299.99922 * 11 9 7 15 15 C 1.53004 * 117.50207 * 129.88361 * 6 5 4 16 16 C 1.53004 * 117.49912 * 61.26005 * 6 5 4 17 17 C 1.50696 * 109.47079 * 120.00038 * 2 1 3 18 18 C 1.38234 * 119.98960 * 93.55544 * 17 2 1 19 19 C 1.38188 * 120.05247 * 179.97438 * 18 17 2 20 20 C 1.38492 * 120.02514 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.01288 * 179.97438 * 20 19 18 22 22 C 1.38401 * 119.97220 * 359.97438 * 20 19 18 23 23 C 1.38439 * 119.95491 * 359.97438 * 22 20 19 24 24 F 1.35091 * 120.01606 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.46619 * 300.00086 * 1 2 3 26 26 H 1.08997 * 109.46690 * 59.99598 * 1 2 3 27 27 H 1.08995 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.00906 * 110.99658 * 209.97933 * 4 2 1 29 29 H 1.09003 * 109.46909 * 305.14251 * 5 4 2 30 30 H 1.09004 * 109.46985 * 65.13303 * 5 4 2 31 31 H 0.96996 * 120.00542 * 185.01434 * 10 9 7 32 32 H 1.08999 * 117.49382 * 0.02562 * 15 6 5 33 33 H 1.09001 * 117.49936 * 145.02178 * 15 6 5 34 34 H 1.09000 * 117.49894 * 214.97818 * 16 6 5 35 35 H 1.09004 * 117.49527 * 359.97438 * 16 6 5 36 36 H 1.08002 * 119.97181 * 0.02562 * 18 17 2 37 37 H 1.07997 * 119.98367 * 180.02562 * 19 18 17 38 38 H 1.08005 * 120.02338 * 179.72798 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.1055 0.2282 -2.3408 6 6 2.4944 -0.5525 -3.5978 7 6 3.9715 -0.7817 -3.7897 8 1 4.3718 -1.7841 -3.7518 9 6 4.8118 0.2883 -4.0133 10 7 4.3114 1.4910 -4.1933 11 14 6.6612 0.0295 -4.0608 12 1 6.9996 -0.9257 -5.1464 13 1 7.3362 1.3273 -4.3157 14 1 7.1178 -0.5192 -2.7586 15 6 1.6429 -0.3425 -4.8516 16 6 1.5417 -1.6532 -4.0688 17 6 2.0324 -0.7104 1.2304 18 6 2.3327 -2.0586 1.1757 19 6 2.7939 -2.7112 2.3030 20 6 2.9553 -2.0151 3.4894 21 9 3.4057 -2.6535 4.5916 22 6 2.6549 -0.6653 3.5454 23 6 2.1940 -0.0122 2.4151 24 9 1.8999 1.3052 2.4685 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9095 -1.1347 -1.0238 29 1 1.1384 0.7069 -2.4950 30 1 2.8592 0.9891 -2.1379 31 1 4.8960 2.2303 -4.4226 32 1 0.8060 0.3522 -4.7810 33 1 2.1511 -0.3699 -5.8155 34 1 1.9833 -2.5429 -4.5178 35 1 0.6381 -1.8214 -3.4828 36 1 2.2076 -2.6021 0.2508 37 1 3.0286 -3.7645 2.2589 38 1 2.7763 -0.1226 4.4713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429798026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = -44.854881 kcal Electronic energy + Delta-G solvation = -21841.089960 eV Core-core repulsion = 18319.982997 eV Total energy + Delta-G solvation = -3521.106962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.08408 -49.00860 -39.27097 -37.06466 -35.20182 -32.00941 -30.90445 -30.80376 -28.68443 -25.76077 -24.67147 -23.55175 -22.60795 -21.05077 -20.20999 -19.10186 -18.24518 -17.21524 -16.42184 -16.04418 -15.90836 -15.50544 -15.35978 -14.81863 -14.61056 -14.47145 -14.12626 -13.78142 -13.45072 -13.12149 -12.71316 -12.49981 -12.03473 -11.89413 -11.75620 -11.61640 -11.34922 -11.16139 -10.94520 -10.91719 -10.60261 -10.45010 -10.12447 -9.36784 -9.11842 -8.83744 -8.63153 -8.48628 -8.11324 -7.64690 -6.05422 -4.10787 0.89106 0.96351 3.27167 3.31620 3.33092 3.35212 3.80139 4.34369 4.37244 4.45626 4.59514 4.77501 4.86273 5.15932 5.20728 5.49492 5.54746 5.66341 5.70223 5.81884 5.87011 5.99143 6.06513 6.14804 6.18230 6.30036 6.44147 6.51105 6.58539 6.71768 6.86499 6.90601 6.92302 7.15194 7.49946 7.54800 7.85023 7.88627 8.12488 8.47108 8.90912 9.53529 11.02097 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.004961 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.352362 B = 5643.172256 C = 6238.296946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.121 3.879 3 H 0.054 0.946 4 N -0.677 5.677 5 C 0.105 3.895 6 C 0.052 3.948 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.886 3.114 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C -0.177 4.177 16 C -0.192 4.192 17 C -0.120 4.120 18 C -0.046 4.046 19 C -0.162 4.162 20 C 0.119 3.881 21 F -0.136 7.136 22 C -0.195 4.195 23 C 0.130 3.870 24 F -0.130 7.130 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.344 0.656 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.142 0.858 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 -4.476 13.130 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.072 0.928 4 N -0.309 5.309 5 C -0.023 4.023 6 C 0.052 3.948 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.516 5.516 11 Si 0.714 3.286 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.215 4.215 16 C -0.230 4.230 17 C -0.121 4.121 18 C -0.064 4.064 19 C -0.181 4.181 20 C 0.099 3.901 21 F -0.115 7.115 22 C -0.215 4.215 23 C 0.110 3.890 24 F -0.108 7.108 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.160 0.840 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.745 -4.450 13.018 14.909 hybrid contribution 1.897 0.720 0.367 2.062 sum -3.848 -3.730 13.385 14.418 Atomic orbital electron populations 1.21730 0.93645 1.02268 1.01149 1.20348 0.95993 0.95686 0.86926 0.92845 1.60750 1.34450 1.32630 1.03072 1.21501 0.98120 0.93246 0.89416 1.18743 0.91438 0.94944 0.89714 1.20503 0.89944 0.92850 1.50003 0.92328 1.24982 0.98312 0.95162 0.94812 1.69958 1.35167 1.00101 1.46357 0.86753 0.85829 0.77343 0.78661 1.20251 1.21351 1.20191 1.22716 1.02349 0.98183 0.98293 1.22722 1.02077 0.92680 1.05488 1.20298 1.01922 0.95119 0.94792 1.20989 0.93909 0.92838 0.98705 1.21260 1.03661 1.01527 0.91656 1.17306 0.99231 0.90055 0.83499 1.91509 1.86617 1.81704 1.51664 1.20928 1.06657 0.94219 0.99653 1.17166 0.99794 0.78229 0.93770 1.91515 1.90741 1.31657 1.96901 0.93254 0.91975 0.91942 0.83634 0.93995 0.93526 0.92950 0.92168 0.90623 0.91183 0.91076 0.82406 0.84025 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.40 37.16 0.35 -1.47 16 2 C 0.12 1.89 2.62 -68.86 -0.18 1.71 16 3 H 0.05 0.93 7.44 -51.93 -0.39 0.54 16 4 N -0.68 -12.11 5.46 -107.95 -0.59 -12.70 16 5 C 0.11 2.29 5.28 -3.83 -0.02 2.27 16 6 C 0.05 1.24 1.49 -155.66 -0.23 1.01 16 7 C -0.50 -12.94 8.82 -34.44 -0.30 -13.24 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.07 1.87 5.24 -17.82 -0.09 1.78 16 10 N -0.88 -24.33 12.57 55.43 0.70 -23.63 16 11 Si 0.89 20.64 29.55 -169.99 -5.02 15.62 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C -0.18 -4.07 9.88 -26.73 -0.26 -4.34 16 16 C -0.19 -4.09 9.85 -26.73 -0.26 -4.36 16 17 C -0.12 -1.67 4.92 -104.55 -0.51 -2.18 16 18 C -0.05 -0.58 8.85 -39.60 -0.35 -0.93 16 19 C -0.16 -1.82 10.03 -39.51 -0.40 -2.22 16 20 C 0.12 1.40 7.30 -39.43 -0.29 1.12 16 21 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 22 C -0.19 -2.33 10.01 -39.45 -0.39 -2.72 16 23 C 0.13 1.76 7.24 -39.43 -0.29 1.48 16 24 F -0.13 -1.85 16.54 2.25 0.04 -1.81 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.91 7.45 -51.93 -0.39 0.52 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.34 6.34 7.34 -39.29 -0.29 6.05 16 29 H 0.04 0.89 7.17 -51.93 -0.37 0.52 16 30 H 0.05 1.15 7.25 -51.93 -0.38 0.77 16 31 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 32 H 0.06 1.31 8.06 -51.93 -0.42 0.90 16 33 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.16 1.92 7.03 -52.49 -0.37 1.56 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -26.79 328.33 -8.23 -35.02 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.10 Total: 6.25 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.24 Total: -22.10 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.11 Total: -36.34 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.79 -8.23 -35.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429798026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.835 kcal (2) G-P(sol) polarization free energy of solvation -26.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds