Wall clock time and date at job start Tue Mar 31 2020 05:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 N 1.46898 * 109.47603 * 240.00032 * 2 1 3 5 5 C 1.46899 * 111.00193 * 86.02111 * 4 2 1 6 6 C 1.52997 * 109.47399 * 185.14561 * 5 4 2 7 7 C 1.50700 * 115.54564 * 275.60020 * 6 5 4 8 8 H 1.08006 * 119.99896 * 114.45407 * 7 6 5 9 9 C 1.37873 * 120.00281 * 294.44504 * 7 6 5 10 10 N 1.31509 * 119.99993 * 353.16666 * 9 7 6 11 11 Si 1.86808 * 120.00069 * 173.16099 * 9 7 6 12 12 H 1.48502 * 109.46711 * 60.00143 * 11 9 7 13 13 H 1.48495 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47155 * 300.00467 * 11 9 7 15 15 C 1.53003 * 117.50027 * 129.89552 * 6 5 4 16 16 C 1.52997 * 117.50116 * 61.27052 * 6 5 4 17 17 C 1.50696 * 109.47016 * 119.99784 * 2 1 3 18 18 C 1.38257 * 120.00290 * 93.55714 * 17 2 1 19 19 C 1.38205 * 120.07695 * 179.70031 * 18 17 2 20 20 C 1.38262 * 120.07058 * 0.05161 * 19 18 17 21 21 C 1.38369 * 119.99622 * 359.96991 * 20 19 18 22 22 F 1.35098 * 120.03346 * 179.97438 * 21 20 19 23 23 C 1.38375 * 120.00108 * 273.28323 * 17 2 1 24 24 F 1.35096 * 120.03422 * 0.24969 * 23 17 2 25 25 H 1.09006 * 109.46657 * 60.00285 * 1 2 3 26 26 H 1.08997 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47739 * 300.00235 * 1 2 3 28 28 H 1.00898 * 111.00542 * 209.97519 * 4 2 1 29 29 H 1.09001 * 109.47171 * 305.14713 * 5 4 2 30 30 H 1.09005 * 109.47317 * 65.14233 * 5 4 2 31 31 H 0.97007 * 119.99726 * 185.00537 * 10 9 7 32 32 H 1.08995 * 117.49904 * 0.02562 * 15 6 5 33 33 H 1.09004 * 117.49455 * 145.02144 * 15 6 5 34 34 H 1.09000 * 117.50226 * 214.98406 * 16 6 5 35 35 H 1.08997 * 117.49815 * 359.97438 * 16 6 5 36 36 H 1.08008 * 119.95846 * 359.72777 * 18 17 2 37 37 H 1.08001 * 119.96850 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.00028 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.1056 0.2283 -2.3408 6 6 2.4946 -0.5524 -3.5978 7 6 3.9717 -0.7815 -3.7894 8 1 4.3720 -1.7839 -3.7516 9 6 4.8120 0.2884 -4.0131 10 7 4.3115 1.4912 -4.1932 11 14 6.6615 0.0297 -4.0601 12 1 7.0001 -0.9256 -5.1456 13 1 7.3366 1.3277 -4.3139 14 1 7.1178 -0.5188 -2.7578 15 6 1.6433 -0.3422 -4.8516 16 6 1.5420 -1.6530 -4.0689 17 6 2.0323 -0.7103 1.2305 18 6 2.3328 -2.0588 1.1761 19 6 2.7994 -2.7104 2.3020 20 6 2.9658 -2.0154 3.4856 21 6 2.6656 -0.6659 3.5435 22 9 2.8274 0.0137 4.6998 23 6 2.1982 -0.0118 2.4134 24 9 1.9053 1.3059 2.4673 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.9096 -1.1345 -1.0238 29 1 1.1385 0.7069 -2.4950 30 1 2.8592 0.9893 -2.1379 31 1 4.8963 2.2305 -4.4224 32 1 0.8064 0.3525 -4.7811 33 1 2.1517 -0.3697 -5.8154 34 1 1.9835 -2.5427 -4.5178 35 1 0.6383 -1.8212 -3.4831 36 1 2.2031 -2.6034 0.2524 37 1 3.0340 -3.7637 2.2574 38 1 3.3301 -2.5258 4.3649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430747778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:04 Heat of formation + Delta-G solvation = -43.621641 kcal Electronic energy + Delta-G solvation = -21952.019120 eV Core-core repulsion = 18430.965635 eV Total energy + Delta-G solvation = -3521.053485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.45309 -48.53011 -39.32865 -37.08617 -35.25273 -32.01085 -31.07784 -30.28202 -28.95480 -25.76820 -24.78766 -23.45344 -22.59240 -21.05978 -20.25809 -19.10164 -17.90443 -17.18043 -16.91472 -16.31175 -16.00009 -15.28314 -14.96600 -14.72989 -14.61407 -14.59329 -14.11844 -13.74906 -13.50070 -12.89012 -12.78261 -12.31135 -12.04908 -11.99946 -11.81695 -11.76261 -11.34966 -11.14983 -10.93731 -10.91737 -10.57092 -10.45248 -10.12587 -9.37931 -8.89628 -8.83961 -8.76072 -8.49163 -8.11646 -7.65491 -6.05463 -4.10873 0.90942 0.94362 3.27066 3.33170 3.34151 3.34954 3.72399 4.31471 4.37104 4.45781 4.62513 4.85418 4.93164 5.10743 5.20143 5.41799 5.53936 5.65166 5.71305 5.76053 5.89503 6.03931 6.10618 6.17352 6.19246 6.30970 6.43421 6.50770 6.58362 6.72989 6.86259 6.90352 6.91869 7.15069 7.49735 7.54516 7.84324 7.88127 8.11916 8.46942 8.90806 9.53458 11.02061 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.005010 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.518161 B = 5587.904349 C = 6156.735755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.119 3.881 3 H 0.055 0.945 4 N -0.676 5.676 5 C 0.105 3.895 6 C 0.052 3.948 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C -0.177 4.177 16 C -0.192 4.192 17 C -0.083 4.083 18 C -0.085 4.085 19 C -0.101 4.101 20 C -0.135 4.135 21 C 0.061 3.939 22 F -0.134 7.134 23 C 0.068 3.932 24 F -0.128 7.128 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.345 0.655 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.140 0.860 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -5.851 13.056 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.072 0.928 4 N -0.308 5.308 5 C -0.023 4.023 6 C 0.052 3.948 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.516 5.516 11 Si 0.714 3.286 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.215 4.215 16 C -0.229 4.229 17 C -0.085 4.085 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.153 4.153 21 C 0.041 3.959 22 F -0.112 7.112 23 C 0.047 3.953 24 F -0.106 7.106 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.164 0.836 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.445 -5.769 12.945 15.183 hybrid contribution 1.838 0.978 0.361 2.113 sum -3.607 -4.791 13.306 14.595 Atomic orbital electron populations 1.21726 0.93474 1.02340 1.01241 1.20376 0.96130 0.95748 0.86856 0.92753 1.60756 1.34493 1.32577 1.02964 1.21507 0.98139 0.93249 0.89400 1.18737 0.91449 0.94950 0.89695 1.20500 0.89935 0.92850 1.50029 0.92319 1.24988 0.98330 0.95166 0.94813 1.69964 1.35169 1.00106 1.46327 0.86749 0.85815 0.77348 0.78651 1.20239 1.21351 1.20196 1.22716 1.02349 0.98182 0.98291 1.22719 1.02068 0.92679 1.05483 1.20161 0.99468 0.94959 0.93904 1.21226 0.96397 0.92927 0.99758 1.21129 0.98460 1.00670 0.91624 1.21052 1.02456 0.91523 1.00318 1.17645 1.05493 0.91263 0.81501 1.91505 1.93551 1.79927 1.46235 1.17567 1.04647 0.78917 0.94134 1.91509 1.91078 1.31203 1.96842 0.91870 0.91863 0.93219 0.83576 0.93984 0.93523 0.92944 0.92164 0.90614 0.91174 0.91076 0.82755 0.84227 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.40 37.16 0.35 -1.50 16 2 C 0.12 1.90 2.62 -68.87 -0.18 1.72 16 3 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 4 N -0.68 -12.17 5.46 -107.95 -0.59 -12.76 16 5 C 0.11 2.29 5.28 -3.83 -0.02 2.27 16 6 C 0.05 1.24 1.49 -155.66 -0.23 1.01 16 7 C -0.50 -12.94 8.82 -34.44 -0.30 -13.25 16 8 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 9 C 0.07 1.87 5.24 -17.82 -0.09 1.78 16 10 N -0.88 -24.40 12.57 55.43 0.70 -23.70 16 11 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C -0.18 -4.08 9.88 -26.73 -0.26 -4.34 16 16 C -0.19 -4.08 9.85 -26.73 -0.26 -4.35 16 17 C -0.08 -1.19 4.92 -104.57 -0.51 -1.71 16 18 C -0.08 -1.04 8.84 -39.59 -0.35 -1.39 16 19 C -0.10 -1.01 10.04 -39.58 -0.40 -1.41 16 20 C -0.13 -1.42 10.02 -39.52 -0.40 -1.81 16 21 C 0.06 0.81 7.31 -39.37 -0.29 0.52 16 22 F -0.13 -1.85 17.18 2.25 0.04 -1.81 16 23 C 0.07 1.00 7.25 -39.36 -0.29 0.71 16 24 F -0.13 -2.04 16.45 2.25 0.04 -2.00 16 25 H 0.06 0.93 7.45 -51.93 -0.39 0.55 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.34 6.37 7.34 -39.29 -0.29 6.08 16 29 H 0.04 0.90 7.17 -51.93 -0.37 0.52 16 30 H 0.05 1.16 7.25 -51.93 -0.38 0.78 16 31 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 32 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 33 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.15 1.86 7.04 -52.48 -0.37 1.49 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -27.45 328.22 -8.24 -35.69 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.10 Total: 5.76 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.24 Total: -21.74 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.11 Total: -36.46 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.45 -8.24 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430747778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.933 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds