Wall clock time and date at job start Tue Mar 31 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46691 * 2 1 4 4 N 1.46888 * 109.47300 * 120.00476 * 2 1 3 5 5 C 1.46899 * 111.00124 * 273.81544 * 4 2 1 6 6 C 1.53008 * 109.47208 * 185.32114 * 5 4 2 7 7 C 1.50703 * 115.54781 * 84.18458 * 6 5 4 8 8 H 1.07999 * 119.99957 * 219.66589 * 7 6 5 9 9 C 1.37884 * 119.99864 * 39.66587 * 7 6 5 10 10 N 1.31514 * 119.99984 * 18.92940 * 9 7 6 11 11 Si 1.86803 * 119.99800 * 198.93036 * 9 7 6 12 12 H 1.48499 * 109.47022 * 90.00099 * 11 9 7 13 13 H 1.48492 * 109.47048 * 210.00194 * 11 9 7 14 14 H 1.48496 * 109.46908 * 330.00133 * 11 9 7 15 15 C 1.52997 * 117.50163 * 298.51607 * 6 5 4 16 16 C 1.53000 * 60.03116 * 252.49986 * 15 6 5 17 17 C 1.50701 * 109.47208 * 240.00790 * 2 1 3 18 18 C 1.38254 * 120.00132 * 263.65625 * 17 2 1 19 19 C 1.38208 * 120.07475 * 180.02562 * 18 17 2 20 20 C 1.38264 * 120.06928 * 359.97058 * 19 18 17 21 21 C 1.38366 * 119.99770 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.03143 * 180.02562 * 21 20 19 23 23 C 1.38366 * 120.00048 * 83.37792 * 17 2 1 24 24 F 1.35106 * 120.03873 * 359.97438 * 23 17 2 25 25 H 1.08997 * 109.47162 * 299.98977 * 1 2 3 26 26 H 1.09000 * 109.47344 * 59.99829 * 1 2 3 27 27 H 1.08999 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.00898 * 111.00549 * 37.76820 * 4 2 1 29 29 H 1.09001 * 109.47338 * 65.32481 * 5 4 2 30 30 H 1.09000 * 109.47280 * 305.32170 * 5 4 2 31 31 H 0.97003 * 119.99281 * 184.97650 * 10 9 7 32 32 H 1.09005 * 117.49377 * 359.97438 * 15 6 5 33 33 H 1.08995 * 117.50133 * 144.99567 * 15 6 5 34 34 H 1.08999 * 117.50191 * 107.50212 * 16 15 6 35 35 H 1.09003 * 117.49573 * 252.52584 * 16 15 6 36 36 H 1.07998 * 119.96315 * 359.97438 * 18 17 2 37 37 H 1.08001 * 119.96830 * 179.97438 * 19 18 17 38 38 H 1.07993 * 120.00007 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.1091 0.2290 2.3397 6 6 2.7453 -0.4923 3.5297 7 6 4.2521 -0.5182 3.5441 8 1 4.7739 -1.4096 3.8594 9 6 4.9645 0.5963 3.1548 10 7 4.3805 1.7745 3.1301 11 14 6.7590 0.4328 2.6623 12 1 6.8500 0.1711 1.2034 13 1 7.4776 1.6915 2.9853 14 1 7.3757 -0.6943 3.4068 15 6 2.0125 -1.7129 4.0900 16 6 2.0267 -0.4016 4.8782 17 6 2.0323 -0.7102 -1.2306 18 6 2.3875 -2.0446 -1.1620 19 6 2.8489 -2.6973 -2.2895 20 6 2.9557 -2.0174 -3.4886 21 6 2.6010 -0.6819 -3.5606 22 9 2.7046 -0.0169 -4.7321 23 6 2.1327 -0.0284 -2.4304 24 9 1.7800 1.2739 -2.4997 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.4382 -1.4868 1.4210 29 1 1.1096 0.5678 2.6124 30 1 2.7217 1.0879 2.0657 31 1 4.8591 2.5458 2.7880 32 1 1.0769 -2.0017 3.6112 33 1 2.6201 -2.5345 4.4691 34 1 1.1007 0.1720 4.9176 35 1 2.6441 -0.3604 5.7756 36 1 2.3051 -2.5773 -0.2262 37 1 3.1263 -3.7396 -2.2339 38 1 3.3160 -2.5286 -4.3690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430747779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:06 Heat of formation + Delta-G solvation = -38.788207 kcal Electronic energy + Delta-G solvation = -22152.207125 eV Core-core repulsion = 18631.363233 eV Total energy + Delta-G solvation = -3520.843892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.33203 -48.40984 -39.17306 -37.23556 -35.30359 -32.12903 -31.01584 -30.14363 -28.77366 -25.72687 -24.63700 -23.55811 -22.48335 -21.24137 -20.45048 -19.00873 -17.81812 -17.04625 -16.87261 -16.20330 -16.15764 -14.95650 -14.81584 -14.66023 -14.61096 -14.32244 -14.10444 -13.83836 -13.47853 -12.94002 -12.86885 -12.56305 -12.10370 -11.96394 -11.80120 -11.65084 -11.28612 -11.10369 -10.84503 -10.73307 -10.55320 -10.44190 -10.20696 -9.31870 -9.14263 -8.72977 -8.66923 -8.62233 -7.98267 -7.62029 -6.08100 -4.01134 1.05555 1.11067 3.34130 3.41638 3.44123 3.49070 3.85615 4.42988 4.45395 4.55340 4.75146 4.94099 5.04101 5.09465 5.24296 5.38825 5.43165 5.58149 5.68408 5.87288 5.94377 5.97514 6.10704 6.11699 6.22826 6.32113 6.37329 6.46474 6.55028 6.65137 6.71544 6.87070 6.92074 7.04133 7.33143 7.62433 7.89064 7.94880 8.14252 8.48859 8.92697 9.56799 10.99180 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.005724 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.754538 B = 4890.091523 C = 5537.869913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 H 0.092 0.908 4 N -0.664 5.664 5 C 0.093 3.907 6 C 0.065 3.935 7 C -0.474 4.474 8 H 0.058 0.942 9 C 0.075 3.925 10 N -0.875 5.875 11 Si 0.882 3.118 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.274 1.274 15 C -0.209 4.209 16 C -0.203 4.203 17 C -0.064 4.064 18 C -0.073 4.073 19 C -0.104 4.104 20 C -0.138 4.138 21 C 0.059 3.941 22 F -0.135 7.135 23 C 0.064 3.936 24 F -0.130 7.130 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.328 0.672 29 H -0.003 1.003 30 H 0.116 0.884 31 H 0.260 0.740 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -6.510 -10.808 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.009 3.991 3 H 0.110 0.890 4 N -0.294 5.294 5 C -0.035 4.035 6 C 0.064 3.936 7 C -0.511 4.511 8 H 0.077 0.923 9 C -0.127 4.127 10 N -0.512 5.512 11 Si 0.709 3.291 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.199 1.199 15 C -0.246 4.246 16 C -0.242 4.242 17 C -0.066 4.066 18 C -0.091 4.091 19 C -0.122 4.122 20 C -0.157 4.157 21 C 0.039 3.961 22 F -0.114 7.114 23 C 0.044 3.956 24 F -0.108 7.108 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.015 0.985 30 H 0.133 0.867 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.888 -6.135 -10.984 13.890 hybrid contribution -0.035 0.470 -0.311 0.565 sum -5.923 -5.665 -11.295 13.955 Atomic orbital electron populations 1.22458 0.96348 1.02076 1.02417 1.20329 0.92292 0.97960 0.88520 0.88966 1.60450 1.54606 1.10328 1.03996 1.21758 0.96267 0.96432 0.89006 1.18880 0.93342 0.92776 0.88588 1.20424 0.88501 0.98068 1.44060 0.92336 1.24830 0.98042 0.94641 0.95178 1.70015 1.38466 0.98669 1.44055 0.86761 0.85548 0.77356 0.79411 1.20404 1.21593 1.19936 1.22782 1.01446 0.92541 1.07863 1.23005 1.01751 0.99985 0.99427 1.19998 0.98855 0.94825 0.92895 1.21081 0.95902 0.93078 0.99078 1.21107 0.98956 1.00571 0.91607 1.20996 1.02699 0.91835 1.00133 1.17620 1.05813 0.91703 0.80996 1.91495 1.94227 1.80649 1.45031 1.17546 1.04643 0.79498 0.93943 1.91498 1.89687 1.32804 1.96851 0.91796 0.92398 0.92363 0.85457 0.98492 0.86676 0.93019 0.91909 0.90703 0.92049 0.90437 0.83419 0.84490 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.15 37.16 0.34 -2.05 16 2 C 0.12 1.97 2.56 -68.87 -0.18 1.80 16 3 H 0.09 1.72 7.39 -51.92 -0.38 1.34 16 4 N -0.66 -12.23 5.15 -107.95 -0.56 -12.78 16 5 C 0.09 2.04 5.27 -3.82 -0.02 2.02 16 6 C 0.07 1.54 1.91 -155.62 -0.30 1.24 16 7 C -0.47 -12.62 8.97 -34.44 -0.31 -12.92 16 8 H 0.06 1.58 7.89 -52.49 -0.41 1.16 16 9 C 0.08 2.03 5.04 -17.82 -0.09 1.94 16 10 N -0.87 -24.10 11.25 55.43 0.62 -23.48 16 11 Si 0.88 21.09 29.58 -169.99 -5.03 16.06 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C -0.21 -4.29 9.54 -26.73 -0.25 -4.54 16 16 C -0.20 -4.53 9.89 -26.69 -0.26 -4.79 16 17 C -0.06 -0.99 5.07 -104.57 -0.53 -1.52 16 18 C -0.07 -0.99 9.32 -39.59 -0.37 -1.36 16 19 C -0.10 -1.18 10.04 -39.58 -0.40 -1.58 16 20 C -0.14 -1.61 10.02 -39.52 -0.40 -2.01 16 21 C 0.06 0.84 7.31 -39.36 -0.29 0.55 16 22 F -0.14 -2.00 17.18 2.25 0.04 -1.96 16 23 C 0.06 1.01 7.25 -39.37 -0.29 0.73 16 24 F -0.13 -2.17 16.51 2.25 0.04 -2.14 16 25 H 0.06 0.90 7.64 -51.93 -0.40 0.50 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.33 5.40 7.28 -39.29 -0.29 5.11 16 29 H 0.00 -0.06 7.42 -51.93 -0.39 -0.45 16 30 H 0.12 2.92 5.32 -51.93 -0.28 2.64 16 31 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 32 H 0.06 1.14 7.80 -51.93 -0.41 0.73 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 35 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.15 1.93 6.91 -52.49 -0.36 1.56 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -27.84 325.02 -8.32 -36.16 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.00 Total: 5.74 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -3.34 Total: -22.49 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.07 Total: -36.26 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.10 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.84 -8.32 -36.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430747779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.629 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds