Wall clock time and date at job start Tue Mar 31 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29950 * 126.28477 * 2 1 4 4 O 1.21297 * 110.25144 * 179.72420 * 3 2 1 5 5 C 1.33643 * 109.81000 * 0.47171 * 4 3 2 6 6 C 1.50708 * 126.55456 * 179.79821 * 5 4 3 7 7 C 1.53003 * 109.46788 * 269.69099 * 6 5 4 8 8 C 1.50706 * 109.46663 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00060 * 357.82975 * 8 7 6 10 10 N 1.34774 * 119.99639 * 177.82220 * 8 7 6 11 11 C 1.46500 * 120.00172 * 5.31290 * 10 8 7 12 12 C 1.50701 * 109.46879 * 90.00156 * 11 10 8 13 13 H 1.08003 * 120.00284 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99953 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00252 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99881 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47033 * 89.99840 * 16 14 12 18 18 H 1.48494 * 109.47042 * 209.99813 * 16 14 12 19 19 H 1.48503 * 109.47137 * 330.00019 * 16 14 12 20 20 C 1.46507 * 119.99740 * 185.31380 * 10 8 7 21 21 C 1.52998 * 109.47016 * 299.21287 * 20 10 8 22 22 C 1.53007 * 109.46948 * 59.21153 * 20 10 8 23 23 N 1.31130 * 106.89660 * 359.53939 * 5 4 3 24 24 H 1.09001 * 109.47177 * 269.97395 * 1 2 3 25 25 H 1.08997 * 109.47101 * 29.97158 * 1 2 3 26 26 H 1.08998 * 109.47019 * 149.97211 * 1 2 3 27 27 H 1.09004 * 109.46512 * 29.68485 * 6 5 4 28 28 H 1.08990 * 109.47218 * 149.68942 * 6 5 4 29 29 H 1.08992 * 109.47102 * 299.99455 * 7 6 5 30 30 H 1.09000 * 109.46966 * 60.00268 * 7 6 5 31 31 H 1.08999 * 109.46901 * 209.99885 * 11 10 8 32 32 H 1.08997 * 109.47166 * 330.00033 * 11 10 8 33 33 H 0.97000 * 120.00577 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.47118 * 179.21156 * 20 10 8 35 35 H 1.08997 * 109.47257 * 66.61523 * 21 20 10 36 36 H 1.09000 * 109.46729 * 186.61614 * 21 20 10 37 37 H 1.08999 * 109.46841 * 306.61525 * 21 20 10 38 38 H 1.09000 * 109.46686 * 53.88874 * 22 20 10 39 39 H 1.09001 * 109.46615 * 173.88875 * 22 20 10 40 40 H 1.08997 * 109.47012 * 293.88479 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 0.0055 5 6 3.5299 -0.6210 -0.0007 6 6 4.7970 -1.4369 -0.0013 7 6 5.2254 -1.7125 -1.4441 8 6 6.4928 -2.5278 -1.4446 9 8 7.0247 -2.8226 -0.3953 10 7 7.0351 -2.9295 -2.6113 11 6 6.4600 -2.4773 -3.8805 12 6 7.1249 -1.1928 -4.3039 13 1 7.8982 -0.7567 -3.6888 14 6 6.7453 -0.5738 -5.4759 15 7 5.8034 -1.1045 -6.2247 16 14 7.5690 1.0188 -6.0003 17 1 8.7551 0.7098 -6.8387 18 1 6.6093 1.8379 -6.7832 19 1 7.9975 1.7744 -4.7958 20 6 8.1997 -3.8184 -2.6101 21 6 9.3649 -3.1313 -1.8952 22 6 7.8490 -5.1174 -1.8817 23 7 2.3030 -1.0840 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5143 27 1 5.5844 -0.8853 0.5124 28 1 4.6209 -2.3819 0.5122 29 1 4.4380 -2.2640 -1.9578 30 1 5.4015 -0.7674 -1.9576 31 1 6.6209 -3.2384 -4.6440 32 1 5.3905 -2.3087 -3.7553 33 1 5.5366 -0.6692 -7.0495 34 1 8.4858 -4.0437 -3.6375 35 1 9.1236 -3.0119 -0.8390 36 1 10.2631 -3.7407 -1.9961 37 1 9.5382 -2.1520 -2.3413 38 1 6.9523 -5.5513 -2.3240 39 1 8.6767 -5.8207 -1.9743 40 1 7.6684 -4.9056 -0.8278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522584089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:45 Heat of formation + Delta-G solvation = 15.769181 kcal Electronic energy + Delta-G solvation = -22385.107088 eV Core-core repulsion = 19010.009249 eV Total energy + Delta-G solvation = -3375.097839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.46420 -39.49099 -36.06600 -35.62685 -34.42784 -33.19500 -31.87941 -30.78246 -29.10481 -27.08101 -26.62753 -25.50628 -23.41548 -22.87621 -21.67664 -20.75515 -18.34315 -17.77014 -17.26968 -16.68906 -16.10965 -15.51298 -15.12012 -14.70521 -14.36235 -13.97728 -13.66790 -13.55971 -13.25008 -13.06928 -12.66881 -12.58592 -12.36321 -12.14840 -12.01017 -11.83311 -11.54906 -11.45407 -11.20470 -11.01386 -10.96133 -10.92681 -10.86157 -10.63396 -10.41409 -10.09655 -9.79919 -9.73398 -8.89265 -8.58831 -7.75129 -6.21792 -4.29555 1.23806 2.28975 2.91072 3.20995 3.28135 3.29528 3.36036 3.67639 3.91637 4.11862 4.31282 4.92423 5.10800 5.14333 5.21186 5.26236 5.28751 5.38971 5.52241 5.66208 5.68518 5.78260 5.86338 5.93209 5.99050 6.06762 6.15925 6.19576 6.29345 6.34363 6.44664 6.71009 6.77542 6.84487 7.14402 7.54090 7.73565 8.01609 8.26119 8.31164 8.75528 8.96068 9.39099 10.84797 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.005797 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.811251 B = 4829.193922 C = 6464.769480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.164 3.836 3 N -0.391 5.391 4 O 0.077 5.923 5 C 0.198 3.802 6 C -0.012 4.012 7 C -0.135 4.135 8 C 0.525 3.475 9 O -0.571 6.571 10 N -0.589 5.589 11 C 0.235 3.765 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.148 3.852 21 C -0.163 4.163 22 C -0.164 4.164 23 N -0.486 5.486 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -2.048 9.564 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 N -0.100 5.100 4 O 0.020 5.980 5 C -0.022 4.022 6 C -0.051 4.051 7 C -0.176 4.176 8 C 0.313 3.687 9 O -0.453 6.453 10 N -0.320 5.320 11 C 0.115 3.885 12 C -0.577 4.577 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.044 3.956 21 C -0.221 4.221 22 C -0.222 4.222 23 N -0.221 5.221 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.728 -1.671 9.887 11.086 hybrid contribution 0.494 0.946 -0.779 1.321 sum -4.234 -0.725 9.108 10.070 Atomic orbital electron populations 1.20101 0.83177 1.04629 1.03968 1.25881 1.00527 0.83755 1.00734 1.74614 0.89512 1.24076 1.21836 1.85297 1.22186 1.24983 1.65570 1.28952 0.97082 0.81992 0.94176 1.20043 0.87364 0.98376 0.99306 1.21611 0.97346 1.03383 0.95252 1.20033 0.85490 0.79580 0.83585 1.90553 1.64036 1.58935 1.31735 1.48307 1.29589 1.46397 1.07666 1.19494 0.94420 0.95274 0.79297 1.21501 1.21558 1.07676 1.06937 0.91948 1.24942 0.94891 0.97777 0.96167 1.69914 1.29232 1.39733 1.14056 0.86538 0.79278 0.83123 0.78855 1.20470 1.21082 1.19666 1.20841 0.85919 0.89081 0.99712 1.22170 0.96693 1.00633 1.02601 1.22187 1.00875 0.96662 1.02525 1.71907 0.99771 1.29315 1.21066 0.89579 0.89639 0.89066 0.87338 0.86805 0.88474 0.87179 0.94654 0.94347 0.92498 0.89931 0.90763 0.93207 0.92410 0.93096 0.92660 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.16 2.38 8.22 -156.37 -1.28 1.09 16 3 N -0.39 -6.25 12.16 30.90 0.38 -5.88 16 4 O 0.08 1.22 11.31 18.10 0.20 1.43 16 5 C 0.20 2.97 7.77 -13.05 -0.10 2.87 16 6 C -0.01 -0.16 5.13 -27.88 -0.14 -0.30 16 7 C -0.14 -2.23 4.17 -27.88 -0.12 -2.34 16 8 C 0.52 9.77 7.08 -10.98 -0.08 9.69 16 9 O -0.57 -10.95 12.37 5.56 0.07 -10.88 16 10 N -0.59 -11.58 2.41 -167.46 -0.40 -11.98 16 11 C 0.24 5.33 4.99 -5.19 -0.03 5.31 16 12 C -0.54 -13.54 9.39 -34.44 -0.32 -13.86 16 13 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -24.25 13.29 55.43 0.74 -23.52 16 16 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 C 0.15 2.61 3.28 -67.92 -0.22 2.39 16 21 C -0.16 -2.75 9.01 37.16 0.33 -2.41 16 22 C -0.16 -2.53 9.01 37.16 0.33 -2.20 16 23 N -0.49 -7.56 11.55 -9.87 -0.11 -7.68 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.11 1.39 8.08 -51.93 -0.42 0.97 16 28 H 0.11 1.49 8.12 -51.93 -0.42 1.07 16 29 H 0.10 1.60 7.48 -51.93 -0.39 1.21 16 30 H 0.11 1.97 8.10 -51.93 -0.42 1.55 16 31 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 32 H 0.04 0.90 6.39 -51.93 -0.33 0.56 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.08 1.46 7.79 -51.93 -0.40 1.06 16 35 H 0.07 1.32 6.27 -51.93 -0.33 1.00 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -28.82 337.67 -6.37 -35.19 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.96 Total: 1.23 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.34 Total: 1.63 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.60 Total: -49.06 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.27 Total: -9.45 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.82 -6.37 -35.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522584089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.959 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds