Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99785 * 2 1 4 4 O 1.20823 * 119.99891 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99826 * 179.97438 * 3 2 1 6 6 C 1.50694 * 115.55664 * 305.41134 * 5 3 2 7 7 O 1.21283 * 120.00241 * 105.46795 * 6 5 3 8 8 N 1.34778 * 119.99954 * 285.19650 * 6 5 3 9 9 C 1.46928 * 120.63065 * 3.17497 * 8 6 5 10 10 C 1.53625 * 108.54595 * 126.36882 * 9 8 6 11 11 C 1.53040 * 109.23839 * 54.85417 * 10 9 8 12 12 C 1.50697 * 109.46203 * 178.49106 * 11 10 9 13 13 H 1.08002 * 120.00386 * 120.07062 * 12 11 10 14 14 C 1.37886 * 120.00029 * 300.07348 * 12 11 10 15 15 N 1.31512 * 119.99870 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47327 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46842 * 120.00150 * 16 14 12 19 19 H 1.48499 * 109.47580 * 240.00086 * 16 14 12 20 20 C 1.53038 * 109.54165 * 298.51696 * 11 10 9 21 21 C 1.46926 * 120.63240 * 183.45944 * 8 6 5 22 22 C 1.53003 * 117.49528 * 91.08219 * 5 3 2 23 23 C 1.53006 * 117.49586 * 159.73646 * 5 3 2 24 24 H 1.09001 * 109.47008 * 299.99741 * 1 2 3 25 25 H 1.08998 * 109.46781 * 59.99900 * 1 2 3 26 26 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.58861 * 246.20745 * 9 8 6 28 28 H 1.09008 * 109.58547 * 6.62870 * 9 8 6 29 29 H 1.08999 * 109.63302 * 294.87218 * 10 9 8 30 30 H 1.08993 * 109.43827 * 174.72762 * 10 9 8 31 31 H 1.09006 * 109.45727 * 58.53813 * 11 10 9 32 32 H 0.96998 * 119.99917 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.49842 * 301.40811 * 20 11 10 34 34 H 1.08999 * 109.49618 * 181.31384 * 20 11 10 35 35 H 1.08995 * 109.58794 * 353.37119 * 21 8 6 36 36 H 1.08999 * 109.58682 * 113.79493 * 21 8 6 37 37 H 1.09000 * 117.49804 * 215.00338 * 22 5 3 38 38 H 1.09001 * 117.49998 * 0.02562 * 22 5 3 39 39 H 1.08996 * 117.49946 * 359.97438 * 23 5 3 40 40 H 1.08997 * 117.49593 * 144.98092 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.2563 0.5225 1.1090 7 8 4.8261 -0.5212 0.8703 8 7 4.2449 1.0121 2.3647 9 6 3.5057 2.2416 2.6820 10 6 2.5530 1.9509 3.8516 11 6 3.3535 1.3789 5.0238 12 6 2.4295 1.1264 6.1872 13 1 2.3223 0.1281 6.5850 14 6 1.7207 2.1700 6.7437 15 7 1.8515 3.3858 6.2597 16 14 0.5747 1.8569 8.1853 17 1 0.6067 0.4150 8.5390 18 1 1.0160 2.6623 9.3523 19 1 -0.8090 2.2447 7.8111 20 6 4.0118 0.0637 4.6008 21 6 4.9764 0.3300 3.4409 22 6 4.2709 1.3372 -1.3561 23 6 4.2053 2.5833 -0.4695 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2068 3.0269 2.9647 28 1 2.9314 2.5579 1.8111 29 1 1.7991 1.2284 3.5390 30 1 2.0654 2.8754 4.1607 31 1 4.1233 2.0916 5.3199 32 1 1.3526 4.1199 6.6510 33 1 3.2442 -0.6411 4.2812 34 1 4.5626 -0.3548 5.4431 35 1 5.3729 -0.6155 3.0710 36 1 5.7950 0.9625 3.7842 37 1 5.2335 0.8339 -1.4469 38 1 3.6459 1.3216 -2.2490 39 1 3.5372 3.3867 -0.7795 40 1 5.1245 2.8999 0.0233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545238335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -95.585702 kcal Electronic energy + Delta-G solvation = -23363.164621 eV Core-core repulsion = 19950.945321 eV Total energy + Delta-G solvation = -3412.219300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04108 -39.51347 -37.30508 -36.72925 -35.72785 -33.52523 -31.26509 -30.09933 -28.25948 -26.55353 -25.13754 -23.17879 -22.84860 -22.22885 -21.35054 -19.66626 -18.81459 -17.62949 -16.95436 -16.47667 -16.39236 -15.94413 -15.45242 -14.77255 -14.55977 -14.24248 -13.82586 -13.29403 -13.12521 -13.07042 -12.81554 -12.58227 -12.36681 -12.12400 -11.81086 -11.68676 -11.31850 -11.27187 -10.97693 -10.79316 -10.75823 -10.63125 -10.48720 -10.40071 -10.12259 -9.71280 -9.48032 -9.19803 -8.94800 -8.40348 -8.08016 -6.04384 -4.10593 2.00654 2.45477 2.80251 3.16121 3.26285 3.34880 3.38782 3.63166 4.39754 4.48033 4.52171 4.59805 4.73484 5.09233 5.20568 5.25231 5.34501 5.43837 5.53957 5.61010 5.63396 5.76929 5.87585 5.90678 6.06509 6.09893 6.26543 6.32582 6.40732 6.61867 6.83647 6.99708 7.09829 7.25596 7.63236 7.66918 7.81987 7.89150 8.01987 8.38235 8.38857 8.92964 9.54644 11.01252 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.005575 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.391909 B = 5020.854061 C = 5561.032614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.346 6.346 3 C 0.510 3.490 4 O -0.492 6.492 5 C -0.168 4.168 6 C 0.554 3.446 7 O -0.540 6.540 8 N -0.590 5.590 9 C 0.097 3.903 10 C -0.120 4.120 11 C 0.048 3.952 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.124 4.124 21 C 0.111 3.889 22 C -0.123 4.123 23 C -0.129 4.129 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.105 0.895 31 H 0.028 0.972 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -1.944 -13.643 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.262 6.262 3 C 0.351 3.649 4 O -0.379 6.379 5 C -0.173 4.173 6 C 0.340 3.660 7 O -0.417 6.417 8 N -0.321 5.321 9 C -0.025 4.025 10 C -0.159 4.159 11 C 0.030 3.970 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.162 4.162 21 C -0.010 4.010 22 C -0.160 4.160 23 C -0.166 4.166 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.278 -2.024 -13.696 14.031 hybrid contribution -1.099 0.012 0.940 1.446 sum 1.179 -2.013 -12.757 12.968 Atomic orbital electron populations 1.23351 0.75796 1.03970 1.02790 1.86542 1.23656 1.32527 1.83493 1.21859 0.89043 0.81725 0.72243 1.90688 1.66112 1.36219 1.44899 1.20886 0.89267 1.06796 1.00319 1.18817 0.80301 0.84511 0.82420 1.90658 1.45861 1.22644 1.82587 1.48223 1.49636 1.26989 1.07284 1.22273 0.95296 0.84790 1.00173 1.22071 0.96933 1.03774 0.93100 1.18653 0.94656 0.90931 0.92802 1.21228 1.24871 0.94415 1.14454 0.92619 1.24968 0.96853 0.95147 0.97028 1.69843 1.42252 0.99548 1.41341 0.86562 0.80695 0.78334 0.82571 1.19822 1.21013 1.21072 1.22015 0.97757 1.01009 0.95394 1.21777 0.94562 0.97241 0.87444 1.23136 1.02158 0.99950 0.90749 1.23268 1.02274 0.90416 1.00665 0.91273 0.91881 0.87890 0.91546 0.91036 0.94593 0.87659 0.95349 0.92994 0.92904 0.91909 0.90134 0.91806 0.86480 0.87369 0.86426 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.35 -5.53 10.55 -39.26 -0.41 -5.94 16 3 C 0.51 8.34 6.36 36.00 0.23 8.56 16 4 O -0.49 -8.61 15.49 -18.75 -0.29 -8.90 16 5 C -0.17 -2.53 1.25 -156.81 -0.20 -2.73 16 6 C 0.55 9.97 6.87 -10.99 -0.08 9.89 16 7 O -0.54 -10.86 16.34 5.56 0.09 -10.77 16 8 N -0.59 -10.87 2.97 -172.50 -0.51 -11.38 16 9 C 0.10 1.83 6.10 -3.48 -0.02 1.81 16 10 C -0.12 -2.75 5.17 -26.39 -0.14 -2.89 16 11 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 12 C -0.51 -13.68 8.56 -34.44 -0.29 -13.97 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.61 11.31 55.43 0.63 -23.99 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.12 -2.54 5.30 -26.61 -0.14 -2.69 16 21 C 0.11 2.03 6.44 -3.71 -0.02 2.01 16 22 C -0.12 -1.37 9.80 -26.69 -0.26 -1.64 16 23 C -0.13 -1.49 8.99 -26.69 -0.24 -1.73 16 24 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.30 4.50 -51.92 -0.23 1.06 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 2.69 6.03 -51.93 -0.31 2.38 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.12 1.28 7.82 -51.93 -0.41 0.87 16 40 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -30.96 329.35 -6.86 -37.83 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.93 Total: 1.65 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.38 Total: 0.62 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.12 Total: -35.37 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.61 Total: -25.61 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.96 -6.86 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545238335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.758 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds