Wall clock time and date at job start Tue Mar 31 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 C 1.52993 * 109.47120 * 239.99111 * 2 1 3 5 5 C 1.50705 * 109.47088 * 175.00116 * 4 2 1 6 6 H 1.08000 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00021 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99975 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47127 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47397 * 119.99687 * 9 7 5 12 12 H 1.48497 * 109.47217 * 239.99767 * 9 7 5 13 13 N 1.46904 * 109.46467 * 119.99792 * 2 1 3 14 14 C 1.46957 * 111.00082 * 294.99603 * 13 2 1 15 15 C 1.53049 * 109.36473 * 183.19243 * 14 13 2 16 16 N 1.46950 * 109.36593 * 301.60079 * 15 14 13 17 17 C 1.38609 * 111.00138 * 183.18949 * 16 15 14 18 18 N 1.29683 * 124.94801 * 0.02562 * 17 16 15 19 19 C 1.32124 * 116.86353 * 179.97438 * 18 17 16 20 20 C 1.33323 * 114.58053 * 0.02562 * 19 18 17 21 21 S 1.70968 * 124.94876 * 179.97438 * 17 16 15 22 22 C 1.46957 * 110.88117 * 59.31882 * 16 15 14 23 23 C 1.46950 * 111.00417 * 58.80014 * 13 2 1 24 24 H 1.09001 * 109.47704 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47388 * 300.00672 * 1 2 3 26 26 H 1.09005 * 109.46930 * 60.00482 * 1 2 3 27 27 H 1.08995 * 109.48018 * 295.00785 * 4 2 1 28 28 H 1.09006 * 109.47152 * 55.00518 * 4 2 1 29 29 H 0.97007 * 120.00347 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.48831 * 63.22644 * 14 13 2 31 31 H 1.09003 * 109.49078 * 303.15744 * 14 13 2 32 32 H 1.08999 * 109.49182 * 181.62861 * 15 14 13 33 33 H 1.09002 * 109.48980 * 61.56566 * 15 14 13 34 34 H 1.08000 * 122.70907 * 179.97438 * 19 18 17 35 35 H 1.08007 * 125.94910 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.49110 * 60.64798 * 22 16 15 37 37 H 1.09000 * 109.48797 * 180.71238 * 22 16 15 38 38 H 1.09002 * 109.48587 * 296.77605 * 23 13 2 39 39 H 1.09006 * 109.48827 * 56.81817 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3125 6 1 4.0790 -0.0862 -0.5391 7 6 4.2303 -1.1930 -2.3581 8 7 3.5764 -1.8374 -3.2997 9 14 6.0921 -1.0618 -2.4364 10 1 6.5838 -0.2922 -1.2655 11 1 6.6854 -2.4230 -2.4191 12 1 6.4871 -0.3655 -3.6871 13 7 2.0195 -0.6925 1.1995 14 6 1.6484 0.0395 2.4186 15 6 2.2433 -0.6697 3.6374 16 7 1.7488 -2.0527 3.6859 17 6 2.2107 -2.7060 4.8177 18 7 2.9771 -2.1768 5.7201 19 6 3.3219 -2.9470 6.7368 20 6 2.8242 -4.1830 6.6901 21 16 1.8522 -4.3266 5.2280 22 6 2.1199 -2.7847 2.4668 23 6 1.5250 -2.0754 1.2480 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7516 -1.7716 -1.2055 28 1 1.6054 -0.2620 -2.1369 29 1 4.0607 -2.2443 -4.0351 30 1 0.5626 0.0687 2.5089 31 1 2.0366 1.0567 2.3644 32 1 1.9453 -0.1449 4.5450 33 1 3.3306 -0.6749 3.5604 34 1 3.9564 -2.6033 7.5404 35 1 2.9875 -4.9603 7.4219 36 1 3.2057 -2.8139 2.3765 37 1 1.7317 -3.8018 2.5211 38 1 0.4377 -2.0703 1.3251 39 1 1.8228 -2.6002 0.3402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555335049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:23 Heat of formation + Delta-G solvation = 65.491058 kcal Electronic energy + Delta-G solvation = -20292.770189 eV Core-core repulsion = 17362.581323 eV Total energy + Delta-G solvation = -2930.188866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26583 -38.79141 -36.20245 -32.88422 -31.18388 -30.86337 -29.14371 -27.36834 -26.30980 -23.97805 -23.73465 -22.87812 -20.80830 -19.56741 -18.75291 -18.29700 -16.40139 -16.19275 -15.31225 -15.22868 -14.82761 -14.66883 -14.60447 -14.12384 -13.82444 -13.44988 -13.12795 -12.99838 -12.16788 -11.93436 -11.79631 -11.65333 -11.52630 -11.22100 -11.09753 -10.82975 -10.60031 -10.48789 -10.36125 -10.02357 -9.93833 -9.65870 -9.31970 -9.18221 -8.99755 -8.29034 -8.13834 -7.55382 -5.91871 -3.89872 0.73735 1.14810 1.72466 2.77358 3.36272 3.44265 3.49966 3.63048 4.43943 4.50875 4.54780 5.03988 5.13123 5.26386 5.35298 5.45135 5.48311 5.54385 5.60623 5.66769 5.77647 5.85438 5.93305 5.99752 6.04910 6.15126 6.27368 6.35887 6.48351 6.60001 6.74079 6.86202 6.93322 7.47751 7.61963 7.74807 7.83421 7.95431 8.09413 8.54437 9.16843 9.72508 11.19921 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.004681 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.594963 B = 5979.812939 C = 6620.589726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.513 5.513 14 C 0.050 3.950 15 C 0.075 3.925 16 N -0.451 5.451 17 C 0.238 3.762 18 N -0.524 5.524 19 C 0.065 3.935 20 C -0.292 4.292 21 S 0.128 5.872 22 C 0.060 3.940 23 C 0.057 3.943 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.257 0.743 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 -3.450 17.224 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.237 5.237 14 C -0.079 4.079 15 C -0.054 4.054 16 N -0.172 5.172 17 C -0.131 4.131 18 N -0.245 5.245 19 C -0.087 4.087 20 C -0.432 4.432 21 S 0.379 5.621 22 C -0.067 4.067 23 C -0.071 4.071 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.496 -3.761 16.472 17.767 hybrid contribution 1.399 0.307 0.712 1.599 sum -4.097 -3.454 17.184 18.000 Atomic orbital electron populations 1.22518 0.99603 1.01381 1.00821 1.21918 0.90165 0.98514 0.91447 0.90979 1.19240 0.96429 0.95321 0.89913 1.21217 0.91758 1.33015 1.07004 0.92067 1.24994 0.97971 0.95858 0.95962 1.69969 1.35133 1.36929 1.12354 0.86600 0.86488 0.77576 0.77716 1.19794 1.21337 1.21363 1.62312 1.58928 1.01161 1.01258 1.22247 0.98139 0.97803 0.89730 1.22168 0.99494 0.85066 0.98693 1.59305 1.53610 1.04565 0.99708 1.25268 0.95008 0.95302 0.97532 1.66878 1.15218 1.37315 1.05119 1.21531 1.00490 0.89634 0.97039 1.26742 1.09142 1.03052 1.04286 1.83911 1.48922 1.11211 1.18038 1.22573 1.00814 0.96498 0.86801 1.22202 0.96927 0.90843 0.97142 0.92884 0.93946 0.92470 0.96212 0.96207 0.93349 0.94423 0.90051 0.89805 0.91910 0.81028 0.80869 0.91758 0.90071 0.94356 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.49 37.16 0.32 -2.75 16 2 C 0.09 1.71 2.30 -67.72 -0.16 1.55 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.68 4.27 -27.88 -0.12 0.56 16 5 C -0.49 -13.42 8.84 -34.44 -0.30 -13.72 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.51 -9.38 4.41 -226.50 -1.00 -10.38 16 14 C 0.05 0.77 5.25 -3.77 -0.02 0.75 16 15 C 0.07 1.12 4.94 -3.77 -0.02 1.10 16 16 N -0.45 -6.70 4.78 -175.23 -0.84 -7.54 16 17 C 0.24 3.40 6.73 -87.68 -0.59 2.81 16 18 N -0.52 -7.58 9.51 -15.21 -0.14 -7.73 16 19 C 0.06 0.74 11.34 -19.14 -0.22 0.53 16 20 C -0.29 -2.96 11.34 29.02 0.33 -2.63 16 21 S 0.13 1.47 22.33 -107.50 -2.40 -0.93 16 22 C 0.06 0.91 5.46 -3.77 -0.02 0.89 16 23 C 0.06 0.98 4.82 -3.77 -0.02 0.96 16 24 H 0.05 0.88 6.45 -51.93 -0.34 0.54 16 25 H 0.04 0.63 6.59 -51.93 -0.34 0.29 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.02 0.51 6.11 -51.93 -0.32 0.19 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 30 H 0.04 0.56 6.60 -51.93 -0.34 0.22 16 31 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 32 H 0.08 1.19 7.98 -51.93 -0.41 0.78 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.08 7.44 -51.93 -0.39 0.69 16 38 H 0.04 0.62 6.46 -51.93 -0.34 0.29 16 39 H 0.11 2.04 6.07 -51.93 -0.32 1.72 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -30.07 319.08 -10.48 -40.55 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.71 Total: -1.07 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.92 Total: -8.59 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -1.24 Total: -51.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.40 Total: -0.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.07 -10.48 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555335049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.044 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds