Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00335 * 2 1 4 4 O 1.20822 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00069 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47183 * 179.97438 * 5 3 2 7 7 C 1.37101 * 119.99686 * 263.11533 * 6 5 3 8 8 H 1.07999 * 119.99828 * 141.97779 * 7 6 5 9 9 C 1.38943 * 120.00227 * 321.97102 * 7 6 5 10 10 N 1.31411 * 120.00069 * 158.34144 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 338.34476 * 9 7 6 12 12 H 1.48501 * 109.47215 * 95.90832 * 11 9 7 13 13 H 1.48502 * 109.47027 * 215.91324 * 11 9 7 14 14 H 1.48505 * 109.47033 * 335.90502 * 11 9 7 15 15 C 1.34778 * 120.00062 * 83.10978 * 6 5 3 16 16 O 1.21291 * 120.00175 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.99945 * 180.02562 * 15 6 5 18 18 C 1.53957 * 113.57907 * 80.76048 * 17 15 6 19 19 C 1.53157 * 86.69643 * 139.37362 * 18 17 15 20 20 C 1.52908 * 121.13654 * 100.81315 * 19 18 17 21 21 C 1.53954 * 86.77941 * 100.82718 * 20 19 18 22 22 C 1.52903 * 121.14037 * 209.38342 * 19 18 17 23 23 C 1.52912 * 88.03420 * 335.09998 * 19 18 17 24 24 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47248 * 300.00525 * 1 2 3 26 26 H 1.08999 * 109.46704 * 60.00400 * 1 2 3 27 27 H 1.09005 * 109.47181 * 59.99772 * 5 3 2 28 28 H 1.09002 * 109.47325 * 299.99698 * 5 3 2 29 29 H 0.97001 * 119.99965 * 179.97438 * 10 9 7 30 30 H 1.08998 * 112.82519 * 309.67034 * 17 15 6 31 31 H 1.09001 * 113.65757 * 253.88731 * 18 17 15 32 32 H 1.09000 * 113.66240 * 24.93689 * 18 17 15 33 33 H 1.09004 * 113.66311 * 215.29460 * 20 19 18 34 34 H 1.08995 * 113.66621 * 346.36199 * 20 19 18 35 35 H 1.08994 * 113.57917 * 270.12901 * 21 20 19 36 36 H 1.09000 * 113.65011 * 139.34685 * 21 20 19 37 37 H 1.08991 * 113.66507 * 13.64879 * 22 19 18 38 38 H 1.09004 * 113.66423 * 144.70355 * 22 19 18 39 39 H 1.08992 * 113.66682 * 270.42028 * 23 19 18 40 40 H 1.09007 * 113.74464 * 139.38166 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.3132 3.2958 -1.1792 8 1 4.0337 4.3253 -1.3476 9 6 5.0087 2.5958 -2.1574 10 7 4.9635 2.9951 -3.4086 11 14 6.0079 1.0871 -1.6940 12 1 5.1962 -0.1346 -1.9258 13 1 7.2356 1.0313 -2.5276 14 1 6.3865 1.1653 -0.2602 15 6 4.0382 3.3663 1.1582 16 8 3.7454 2.8211 2.2013 17 6 4.4650 4.8116 1.1573 18 6 3.3395 5.7859 0.7645 19 6 3.8675 6.7028 1.8718 20 6 4.7510 7.9076 1.5465 21 6 3.4870 8.7702 1.7148 22 6 2.9352 7.6551 2.6215 23 6 4.4435 5.4609 2.5530 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.9565 0.7804 -0.8892 28 1 3.9558 0.7808 0.8909 29 1 5.4493 2.5067 -4.0914 30 1 5.3949 4.9775 0.6135 31 1 3.4495 6.2000 -0.2378 32 1 2.3389 5.3988 0.9569 33 1 5.5173 8.1034 2.2965 34 1 5.1434 7.9005 0.5296 35 1 2.9223 8.9011 0.7918 36 1 3.6652 9.7096 2.2382 37 1 1.8772 7.4462 2.4634 38 1 3.1911 7.7799 3.6736 39 1 3.7528 4.9827 3.2474 40 1 5.4349 5.6142 2.9795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572002186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = -66.001972 kcal Electronic energy + Delta-G solvation = -23127.818957 eV Core-core repulsion = 19716.882503 eV Total energy + Delta-G solvation = -3410.936453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40419 -39.81206 -38.24043 -35.91569 -34.89243 -34.07226 -32.04732 -29.07524 -26.82863 -25.55825 -25.36223 -25.16398 -24.12572 -21.51716 -20.51981 -18.83990 -17.59415 -17.39604 -17.09539 -16.60656 -15.85948 -15.51889 -15.19913 -15.19778 -14.76281 -14.39376 -13.76735 -13.36784 -12.99822 -12.73068 -12.66293 -12.43246 -12.34316 -11.99181 -11.80345 -11.69283 -11.50462 -11.43388 -10.99788 -10.64190 -10.60058 -10.41218 -10.34628 -10.12187 -9.90843 -9.89773 -9.64908 -9.56534 -9.25091 -8.59643 -7.97511 -6.56198 -4.16849 2.86326 2.95580 3.02816 3.17763 3.21128 3.73330 4.01527 4.27892 4.72409 4.82213 4.89000 4.92778 5.05104 5.24452 5.35863 5.41897 5.44587 5.51822 5.69383 5.70946 5.78817 5.84710 5.87396 5.90210 5.98496 6.07575 6.18729 6.25272 6.28538 6.36586 6.41196 6.49311 6.62757 6.84050 6.86451 7.01770 7.15982 7.97158 8.19641 8.39937 8.85937 9.22820 9.55635 10.54274 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.006609 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.761530 B = 4235.611804 C = 5258.599967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.108 3.892 6 N -0.450 5.450 7 C -0.339 4.339 8 H 0.110 0.890 9 C 0.065 3.935 10 N -0.852 5.852 11 Si 0.859 3.141 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.505 3.495 16 O -0.591 6.591 17 C -0.103 4.103 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.128 4.128 23 C -0.106 4.106 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.276 0.724 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 2.431 6.309 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.375 6.375 5 C -0.017 4.017 6 N -0.171 5.171 7 C -0.466 4.466 8 H 0.128 0.872 9 C -0.143 4.143 10 N -0.487 5.487 11 Si 0.685 3.315 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.180 1.180 15 C 0.296 3.704 16 O -0.475 6.475 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.108 4.108 20 C -0.154 4.154 21 C -0.176 4.176 22 C -0.165 4.165 23 C -0.144 4.144 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.538 2.454 6.595 7.480 hybrid contribution 0.271 -0.875 -0.277 0.957 sum -2.267 1.579 6.318 6.895 Atomic orbital electron populations 1.23128 0.77610 1.02800 1.02218 1.86525 1.22639 1.34604 1.84947 1.24786 0.92869 0.81171 0.72131 1.90598 1.66596 1.36273 1.44025 1.21391 0.86800 0.88829 1.04709 1.43449 1.58029 1.08035 1.07558 1.19142 1.36058 1.00090 0.91289 0.87221 1.25385 0.96208 0.97984 0.94696 1.69767 1.38512 1.40602 0.99785 0.87184 0.81069 0.82817 0.80433 1.19709 1.20682 1.17973 1.20367 0.78848 0.88795 0.82392 1.90527 1.53918 1.70997 1.32107 1.22321 1.00885 0.91146 0.98086 1.22502 0.98026 0.94309 0.97629 1.22503 0.97573 0.92653 0.98070 1.22634 0.96140 0.94755 1.01847 1.22804 0.97900 0.96857 1.00075 1.22734 0.99170 0.96173 0.98458 1.22703 1.00959 0.94711 0.96038 0.88755 0.92366 0.92223 0.87446 0.87517 0.91323 0.87021 0.90712 0.89939 0.90207 0.91138 0.90331 0.92041 0.91674 0.90383 0.89185 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.02 10.56 -39.25 -0.41 -7.43 16 3 C 0.45 10.07 7.98 36.00 0.29 10.35 16 4 O -0.49 -12.14 16.01 -18.75 -0.30 -12.44 16 5 C 0.11 2.44 4.49 -5.19 -0.02 2.42 16 6 N -0.45 -10.93 1.74 -116.10 -0.20 -11.13 16 7 C -0.34 -8.69 8.93 -14.93 -0.13 -8.82 16 8 H 0.11 2.95 6.66 -52.49 -0.35 2.60 16 9 C 0.07 1.67 5.27 -17.47 -0.09 1.58 16 10 N -0.85 -22.91 13.96 55.50 0.77 -22.13 16 11 Si 0.86 19.16 25.01 -169.99 -4.25 14.91 16 12 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 14 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 15 C 0.51 11.90 6.90 -10.99 -0.08 11.83 16 16 O -0.59 -14.89 15.60 5.55 0.09 -14.81 16 17 C -0.10 -2.05 2.94 -90.79 -0.27 -2.32 16 18 C -0.09 -1.59 6.74 -26.15 -0.18 -1.77 16 19 C -0.11 -1.64 1.11 -154.59 -0.17 -1.82 16 20 C -0.12 -1.52 7.84 -26.28 -0.21 -1.72 16 21 C -0.14 -1.66 8.08 -25.75 -0.21 -1.87 16 22 C -0.13 -1.69 7.84 -26.28 -0.21 -1.89 16 23 C -0.11 -1.82 7.16 -26.28 -0.19 -2.01 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.11 2.39 3.67 -51.93 -0.19 2.20 16 28 H 0.11 2.25 7.64 -51.93 -0.40 1.85 16 29 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.11 2.19 7.92 -51.93 -0.41 1.78 16 31 H 0.07 1.37 7.81 -51.93 -0.41 0.96 16 32 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.67 7.44 -51.93 -0.39 1.28 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -30.08 328.58 -5.69 -35.77 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.94 Total: 6.76 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.39 Total: 5.55 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.57 Total: -33.26 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.63 Total: -34.68 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.25 Total: 14.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.08 -5.69 -35.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572002186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.228 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds