Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00198 * 2 1 4 4 O 1.20829 * 119.99784 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00219 * 180.02562 * 3 2 1 6 6 C 1.50696 * 115.55113 * 294.13289 * 5 3 2 7 7 O 1.21279 * 120.00075 * 100.38521 * 6 5 3 8 8 N 1.34780 * 120.00400 * 280.39221 * 6 5 3 9 9 C 1.46926 * 120.62676 * 355.07668 * 8 6 5 10 10 C 1.53194 * 108.77482 * 126.41522 * 9 8 6 11 11 C 1.53043 * 109.31108 * 54.63259 * 10 9 8 12 12 C 1.53044 * 109.54301 * 298.63833 * 11 10 9 13 13 H 1.09004 * 109.49231 * 301.41356 * 12 11 10 14 14 C 1.50690 * 109.49734 * 181.31368 * 12 11 10 15 15 H 1.08003 * 119.99767 * 239.99660 * 14 12 11 16 16 C 1.37874 * 120.00328 * 60.00480 * 14 12 11 17 17 N 1.31516 * 119.99741 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00343 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47004 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47580 * 119.99502 * 18 16 14 21 21 H 1.48500 * 109.46930 * 239.99491 * 18 16 14 22 22 C 1.46921 * 120.63394 * 175.10482 * 8 6 5 23 23 C 1.53004 * 117.52158 * 79.83874 * 5 3 2 24 24 C 1.53001 * 117.49805 * 148.46846 * 5 3 2 25 25 H 1.08997 * 109.47129 * 299.99698 * 1 2 3 26 26 H 1.08990 * 109.47438 * 60.00539 * 1 2 3 27 27 H 1.09007 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.58588 * 6.63554 * 9 8 6 29 29 H 1.08995 * 109.58894 * 246.20199 * 9 8 6 30 30 H 1.08999 * 109.50081 * 174.58588 * 10 9 8 31 31 H 1.09000 * 109.49819 * 294.68608 * 10 9 8 32 32 H 1.08999 * 109.45639 * 58.65987 * 11 10 9 33 33 H 1.09002 * 109.46015 * 178.62959 * 11 10 9 34 34 H 0.97009 * 119.99745 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.58651 * 113.79383 * 22 8 6 36 36 H 1.08996 * 109.58503 * 353.37331 * 22 8 6 37 37 H 1.08994 * 117.49743 * 214.97014 * 23 5 3 38 38 H 1.08999 * 117.49325 * 359.97438 * 23 5 3 39 39 H 1.09003 * 117.49828 * 359.97213 * 24 5 3 40 40 H 1.09005 * 117.49848 * 144.99479 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 -0.0006 6 6 4.2449 0.7535 1.2398 7 8 4.7360 -0.3554 1.2417 8 7 4.3061 1.5195 2.3471 9 6 3.8122 2.9031 2.3283 10 6 2.8039 3.0822 3.4677 11 6 3.4537 2.6646 4.7889 12 6 3.8484 1.1874 4.7209 13 1 2.9633 0.5833 4.5215 14 6 4.4587 0.7689 6.0335 15 1 5.4713 0.3946 6.0632 16 6 3.7244 0.8637 7.1966 17 7 2.4914 1.3199 7.1604 18 14 4.4807 0.3443 8.8237 19 1 5.8692 -0.1299 8.5952 20 1 4.4994 1.5023 9.7531 21 1 3.6745 -0.7530 9.4164 22 6 4.8684 0.9870 3.5956 23 6 4.2843 1.0731 -1.3365 24 6 4.2109 2.4672 -0.7104 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.3249 3.1042 1.3743 29 1 4.6464 3.5908 2.4672 30 1 2.5020 4.1280 3.5254 31 1 1.9287 2.4602 3.2801 32 1 4.3429 3.2703 4.9636 33 1 2.7464 2.8140 5.6047 34 1 1.9749 1.3870 7.9788 35 1 5.7888 1.5184 3.8377 36 1 5.0781 -0.0761 3.4777 37 1 5.2474 0.5632 -1.3182 38 1 3.6681 0.8828 -2.2153 39 1 3.5465 3.1943 -1.1773 40 1 5.1259 2.8744 -0.2801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -94.915434 kcal Electronic energy + Delta-G solvation = -23282.245983 eV Core-core repulsion = 19870.055748 eV Total energy + Delta-G solvation = -3412.190235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04348 -39.51884 -37.25203 -36.72312 -35.82815 -33.46091 -31.34590 -30.23751 -28.27312 -25.99386 -25.09415 -24.10310 -22.78102 -21.73242 -21.53404 -19.64473 -18.77202 -17.60573 -17.01134 -16.56458 -16.39447 -15.76974 -15.40927 -14.85889 -14.53241 -14.17550 -13.75585 -13.48290 -13.20300 -13.12578 -12.78050 -12.65022 -12.27367 -12.09068 -11.97722 -11.81536 -11.32358 -11.03645 -10.96630 -10.84278 -10.81017 -10.65455 -10.48869 -10.25191 -9.95471 -9.84041 -9.53386 -9.35079 -8.83926 -8.40992 -7.97464 -6.03414 -4.10876 1.95482 2.42771 2.86394 3.20940 3.28003 3.36352 3.40613 3.60813 4.40658 4.45417 4.46570 4.57981 4.76081 5.04428 5.14985 5.25957 5.31234 5.39078 5.44820 5.49529 5.59569 5.65068 5.82601 5.85179 6.09456 6.26448 6.33092 6.36549 6.47895 6.62366 6.78230 6.90039 7.14945 7.30849 7.62540 7.67600 7.85046 7.93442 8.05809 8.33315 8.48442 8.92839 9.54235 11.02145 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.005048 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.446028 B = 5545.806705 C = 5806.069909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.511 3.489 4 O -0.494 6.494 5 C -0.168 4.168 6 C 0.551 3.449 7 O -0.530 6.530 8 N -0.592 5.592 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.113 4.113 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.513 4.513 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.117 3.883 23 C -0.124 4.124 24 C -0.134 4.134 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 3.236 -15.752 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.260 6.260 3 C 0.353 3.647 4 O -0.381 6.381 5 C -0.172 4.172 6 C 0.336 3.664 7 O -0.407 6.407 8 N -0.324 5.324 9 C -0.021 4.021 10 C -0.170 4.170 11 C -0.151 4.151 12 C 0.020 3.980 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.003 4.003 23 C -0.161 4.161 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.883 2.970 -15.600 15.905 hybrid contribution -0.094 -0.124 1.060 1.071 sum -0.976 2.846 -14.540 14.848 Atomic orbital electron populations 1.23345 0.75876 1.04033 1.02653 1.86560 1.23565 1.32522 1.83380 1.21865 0.89003 0.81678 0.72150 1.90669 1.66192 1.36268 1.44979 1.20904 0.89266 1.09777 0.97266 1.18776 0.80065 0.84946 0.82630 1.90687 1.47437 1.19741 1.82860 1.48291 1.59739 1.13453 1.10890 1.21913 0.97783 0.82010 1.00367 1.21968 0.97905 1.00380 0.96795 1.21648 1.00138 0.97993 0.95292 1.18991 0.93975 0.93376 0.91623 0.95336 1.21091 0.99894 1.42823 0.91379 0.92338 1.24944 0.94785 0.95011 0.99098 1.69892 1.08983 1.46110 1.27748 0.86509 0.79443 0.78249 0.83649 1.19697 1.21028 1.21027 1.22093 0.97308 0.99241 0.81684 1.23130 1.02194 0.98646 0.92152 1.23276 1.02264 0.91216 1.00365 0.91447 0.91870 0.87822 0.90254 0.91618 0.92320 0.92719 0.94453 0.88566 0.93007 0.92269 0.90180 0.86530 0.87338 0.86696 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.34 -5.36 10.56 -39.26 -0.41 -5.77 16 3 C 0.51 8.10 7.00 36.00 0.25 8.35 16 4 O -0.49 -8.18 15.87 -18.75 -0.30 -8.48 16 5 C -0.17 -2.48 1.25 -156.81 -0.20 -2.67 16 6 C 0.55 10.32 6.85 -10.99 -0.08 10.24 16 7 O -0.53 -11.51 16.43 5.56 0.09 -11.42 16 8 N -0.59 -11.30 2.97 -172.77 -0.51 -11.82 16 9 C 0.10 1.70 6.06 -3.71 -0.02 1.68 16 10 C -0.13 -2.52 6.08 -26.61 -0.16 -2.68 16 11 C -0.11 -2.57 4.96 -26.69 -0.13 -2.70 16 12 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -13.88 8.56 -34.45 -0.29 -14.17 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.04 11.31 55.43 0.63 -24.42 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.12 2.55 5.64 -3.71 -0.02 2.53 16 23 C -0.12 -1.36 9.86 -26.73 -0.26 -1.62 16 24 C -0.13 -1.44 8.03 -26.73 -0.21 -1.66 16 25 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 28 H 0.08 1.20 4.50 -51.93 -0.23 0.97 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 2.48 6.04 -51.93 -0.31 2.17 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.85 7.04 -51.93 -0.37 1.49 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.10 8.00 -51.93 -0.42 0.69 16 40 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -31.68 329.70 -6.87 -38.54 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.94 Total: 1.20 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.36 Total: 1.15 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.11 Total: -36.24 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.62 Total: -25.67 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.68 -6.87 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.373 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds