Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 17 17 N 1.29420 * 125.69363 * 90.02557 * 16 15 14 18 18 N 1.26401 * 116.47407 * 179.97438 * 17 16 15 19 19 C 1.29411 * 116.47689 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.70014 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.49295 * 8.72349 * 20 19 18 22 22 C 1.53002 * 117.49790 * 300.06682 * 20 19 18 23 23 S 1.71214 * 125.69810 * 269.71326 * 16 15 14 24 24 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 26 26 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 27 27 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 28 28 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 31 31 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 32 32 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 33 33 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 34 34 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 35 35 H 1.08997 * 115.55006 * 154.38490 * 20 19 18 36 36 H 1.08996 * 117.50340 * 359.97438 * 21 20 19 37 37 H 1.09000 * 117.49703 * 145.01996 * 21 20 19 38 38 H 1.08999 * 117.49675 * 214.97337 * 22 20 19 39 39 H 1.09003 * 117.49593 * 359.96854 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 0.7402 1.7730 -4.8436 11 1 2.7155 0.9665 -5.9971 12 1 0.6434 -0.2876 -6.1180 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7087 0.1789 4.8708 17 7 0.6020 0.0396 5.5271 18 7 0.4309 0.8110 6.5136 19 6 1.3811 1.6550 6.7577 20 6 1.3944 2.6651 7.8760 21 6 0.2868 2.5696 8.9272 22 6 0.2730 3.7057 7.9014 23 16 2.6246 1.4266 5.6030 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 -1.2950 28 1 3.1264 -0.7995 -1.2054 29 1 2.9272 -2.0234 -3.0613 30 1 1.6054 -1.7197 1.2953 31 1 3.1264 -0.7994 1.2057 32 1 1.9881 0.9874 2.3966 33 1 1.6903 -1.6247 3.7298 34 1 3.2117 -0.7049 3.6406 35 1 2.3818 2.9808 8.2126 36 1 -0.4517 1.7766 8.8097 37 1 0.5455 2.8231 9.9553 38 1 0.5227 4.7060 8.2550 39 1 -0.4740 3.6600 7.1089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = 68.291077 kcal Electronic energy + Delta-G solvation = -18692.436697 eV Core-core repulsion = 15762.369250 eV Total energy + Delta-G solvation = -2930.067448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53407 -37.79460 -37.15545 -34.61260 -32.45038 -31.06604 -28.29907 -26.46588 -25.80485 -24.22667 -23.00198 -22.83516 -22.30366 -19.84271 -19.59811 -19.02618 -16.75895 -16.69075 -16.04434 -15.61788 -15.22131 -14.63170 -14.38485 -13.94494 -13.71774 -13.45178 -13.15804 -12.94406 -12.37085 -11.97038 -11.92932 -11.71818 -11.61168 -11.40103 -11.13783 -10.99600 -10.69252 -10.63143 -10.34230 -10.29607 -10.10795 -9.99455 -9.85209 -9.66769 -9.45524 -8.48843 -8.40511 -8.29600 -6.32929 -4.01115 0.16073 0.61332 1.11694 2.30632 3.36408 3.45177 3.49121 3.58967 3.62394 4.09547 4.31403 4.35439 4.38151 4.51352 4.57069 4.78516 5.15738 5.20664 5.23474 5.36549 5.40306 5.43448 5.55432 5.60025 5.68220 5.73353 5.98571 6.25236 6.37070 6.55398 6.81983 6.99408 7.06344 7.13907 7.32623 7.40717 7.57221 8.26113 8.37395 8.50851 8.92420 9.70218 11.07635 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037608 B = 0.002652 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.337428 B =10557.274145 C =10806.282280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.072 2.928 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.287 1.287 13 C 0.064 3.936 14 N -0.678 5.678 15 C 0.137 3.863 16 C -0.005 4.005 17 N -0.241 5.241 18 N -0.262 5.262 19 C 0.011 3.989 20 C -0.096 4.096 21 C -0.149 4.149 22 C -0.153 4.153 23 S 0.168 5.832 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.008 0.992 28 H 0.004 0.996 29 H 0.268 0.732 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.339 0.661 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 8.544 25.053 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.632 4.632 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.901 3.099 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.214 1.214 13 C -0.064 4.064 14 N -0.310 5.310 15 C 0.004 3.996 16 C -0.285 4.285 17 N -0.078 5.078 18 N -0.099 5.099 19 C -0.267 4.267 20 C -0.119 4.119 21 C -0.188 4.188 22 C -0.192 4.192 23 S 0.414 5.586 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.022 0.978 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.157 0.843 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.188 8.061 23.459 24.806 hybrid contribution 0.875 0.102 1.598 1.825 sum 1.063 8.163 25.057 26.375 Atomic orbital electron populations 1.21589 0.95337 1.00738 1.00397 1.21070 0.96310 0.98839 0.93145 0.92610 1.19259 0.95139 0.95704 0.92263 1.22077 1.38571 1.10317 0.92195 0.93107 1.25828 0.94741 0.97141 1.01404 1.70722 1.36416 1.14692 1.33530 0.83498 0.76238 0.75064 0.75079 1.21543 1.21447 1.21393 1.22240 0.97417 0.97953 0.88820 1.60502 1.64121 1.05785 1.00593 1.20414 0.97820 0.97112 0.84226 1.29198 0.94530 1.01045 1.03678 1.71440 1.16144 1.18494 1.01734 1.71415 1.24222 1.03049 1.11252 1.28231 0.94679 1.01648 1.02187 1.20387 0.97246 0.98224 0.95999 1.23074 0.99604 1.01440 0.94667 1.23110 0.99150 0.94474 1.02486 1.83673 1.21775 1.31134 1.22033 0.94088 0.93813 0.92542 0.97357 0.97807 0.92129 0.90951 0.95287 0.84313 0.87522 0.92660 0.85194 0.87263 0.87699 0.87481 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.07 -1.51 2.48 -90.62 -0.22 -1.73 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.74 8.41 -34.44 -0.29 -17.03 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.20 13.65 55.43 0.76 -27.44 16 9 Si 1.07 25.61 29.90 -169.99 -5.08 20.52 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.06 1.05 5.07 -3.82 -0.02 1.03 16 14 N -0.68 -9.66 5.94 -115.05 -0.68 -10.34 16 15 C 0.14 1.65 6.28 -4.98 -0.03 1.62 16 16 C 0.00 -0.06 7.04 -13.30 -0.09 -0.15 16 17 N -0.24 -3.60 11.66 32.58 0.38 -3.22 16 18 N -0.26 -3.62 11.21 32.58 0.37 -3.26 16 19 C 0.01 0.11 7.08 -13.30 -0.09 0.02 16 20 C -0.10 -0.72 6.30 -91.77 -0.58 -1.30 16 21 C -0.15 -0.99 10.14 -26.69 -0.27 -1.27 16 22 C -0.15 -1.00 10.24 -26.69 -0.27 -1.28 16 23 S 0.17 1.61 23.04 -107.50 -2.48 -0.86 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 26 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 27 H 0.01 0.22 8.00 -51.93 -0.42 -0.20 16 28 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 29 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 30 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.34 4.55 8.72 -39.29 -0.34 4.21 16 33 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.92 7.88 -51.93 -0.41 0.51 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -32.57 340.90 -9.39 -41.96 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.04 Total: -0.77 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.75 Total: -21.72 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.82 Total: -44.26 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.57 -9.39 -41.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.251 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds