Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00253 * 2 1 4 4 H 1.48502 * 109.47464 * 269.99955 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99936 * 3 2 1 6 6 H 1.48499 * 109.47307 * 150.00165 * 3 2 1 7 7 C 1.37880 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00266 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47155 * 179.97438 * 9 7 2 11 11 C 1.35351 * 126.74819 * 125.00408 * 10 9 7 12 12 N 1.35317 * 106.17555 * 180.02562 * 11 10 9 13 13 C 1.46499 * 125.86734 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46840 * 125.00036 * 13 12 11 15 15 O 1.42903 * 109.46726 * 179.97438 * 14 13 12 16 16 C 1.42907 * 113.99838 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.48003 * 310.02192 * 16 15 14 18 18 C 1.53089 * 109.48178 * 190.00093 * 16 15 14 19 19 C 1.53170 * 109.16301 * 182.41009 * 18 16 15 20 20 C 1.53180 * 109.03982 * 56.97926 * 19 18 16 21 21 C 1.53093 * 109.15956 * 303.02231 * 20 19 18 22 22 O 1.42898 * 109.41734 * 57.60486 * 21 20 19 23 23 N 1.28713 * 108.26190 * 0.26064 * 12 11 10 24 24 N 1.28638 * 110.17572 * 359.55998 * 23 12 11 25 25 H 0.97001 * 119.99642 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47084 * 60.00206 * 9 7 2 27 27 H 1.08993 * 109.47200 * 300.00401 * 9 7 2 28 28 H 1.07997 * 126.91211 * 0.03682 * 11 10 9 29 29 H 1.09002 * 109.47391 * 4.99706 * 13 12 11 30 30 H 1.09001 * 109.46813 * 244.99762 * 13 12 11 31 31 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 32 32 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 33 33 H 1.09006 * 109.52227 * 302.31628 * 18 16 15 34 34 H 1.08997 * 109.52175 * 62.43688 * 18 16 15 35 35 H 1.09006 * 109.54480 * 176.84516 * 19 18 16 36 36 H 1.09004 * 109.54652 * 297.10838 * 19 18 16 37 37 H 1.09000 * 109.51926 * 62.92369 * 20 19 18 38 38 H 1.08996 * 109.52080 * 183.05185 * 20 19 18 39 39 H 1.09001 * 109.48014 * 177.59571 * 21 20 19 40 40 H 1.09004 * 109.47623 * 297.60842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6150 0.0013 11 6 4.8699 -3.1722 -0.8867 12 7 5.0346 -4.4573 -0.4962 13 6 5.8787 -5.4544 -1.1592 14 6 6.8652 -6.0411 -0.1476 15 8 7.6881 -7.0142 -0.7942 16 6 8.6504 -7.6263 0.0670 17 1 9.1971 -6.8541 0.6082 18 6 9.6297 -8.4545 -0.7688 19 6 10.6205 -9.1553 0.1658 20 6 9.8414 -10.0130 1.1677 21 6 8.8538 -9.1245 1.9286 22 8 7.9818 -8.4789 0.9987 23 7 4.3176 -4.6546 0.5544 24 7 3.7009 -3.5738 0.8801 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8904 28 1 5.3292 -2.6884 -1.7360 29 1 6.4298 -4.9813 -1.9720 30 1 5.2526 -6.2513 -1.5604 31 1 7.4913 -5.2441 0.2536 32 1 6.3141 -6.5141 0.6651 33 1 9.0792 -9.2008 -1.3417 34 1 10.1717 -7.7991 -1.4504 35 1 11.2858 -9.7910 -0.4185 36 1 11.2059 -8.4088 0.7026 37 1 9.2952 -10.7907 0.6339 38 1 10.5358 -10.4728 1.8709 39 1 8.2666 -9.7369 2.6129 40 1 9.4033 -8.3722 2.4945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603196752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -3.157224 kcal Electronic energy + Delta-G solvation = -21279.926901 eV Core-core repulsion = 17904.008351 eV Total energy + Delta-G solvation = -3375.918550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.61659 -40.08244 -37.62592 -34.81675 -34.16555 -33.15519 -31.31457 -31.08295 -29.36997 -27.84084 -25.31603 -24.02016 -23.63468 -23.01334 -21.27442 -20.79728 -19.88357 -18.00142 -17.22636 -16.75958 -16.54233 -16.31198 -15.88749 -15.20685 -14.97973 -14.73797 -14.35960 -14.03439 -13.96110 -13.33793 -13.24486 -13.13828 -12.66371 -12.39582 -12.14534 -11.96707 -11.70580 -11.62806 -11.45610 -11.12696 -10.98149 -10.63716 -10.59576 -10.21552 -10.09395 -9.93456 -9.86001 -9.44088 -9.30732 -8.52438 -8.27350 -5.98009 -3.96029 2.08776 2.38431 3.11509 3.32493 3.38329 3.41333 3.43677 3.61816 4.26929 4.29174 4.37645 4.42271 4.47807 4.48878 4.57037 4.71348 4.89184 4.95459 5.06415 5.11333 5.19627 5.26120 5.33498 5.35709 5.38944 5.41560 5.52032 5.56059 5.73428 5.75516 5.92235 6.20465 6.53760 6.82998 6.86028 7.08312 7.09524 7.22159 7.74569 8.59502 9.10067 9.22171 9.60872 11.15523 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049047 B = 0.002574 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.744000 B =10874.319072 C =11020.939409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.039 3.961 11 C -0.077 4.077 12 N -0.303 5.303 13 C 0.126 3.874 14 C 0.052 3.948 15 O -0.363 6.363 16 C 0.259 3.741 17 H 0.055 0.945 18 C -0.140 4.140 19 C -0.121 4.121 20 C -0.161 4.161 21 C 0.071 3.929 22 O -0.403 6.403 23 N -0.104 5.104 24 N -0.252 5.252 25 H 0.263 0.737 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.184 0.816 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.198 -17.690 -1.998 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.225 4.225 12 N -0.100 5.100 13 C 0.004 3.996 14 C -0.025 4.025 15 O -0.282 6.282 16 C 0.163 3.837 17 H 0.072 0.928 18 C -0.178 4.178 19 C -0.158 4.158 20 C -0.199 4.199 21 C -0.005 4.005 22 O -0.324 6.324 23 N -0.082 5.082 24 N -0.119 5.119 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.201 0.799 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.409 -18.680 -1.143 30.758 hybrid contribution 1.010 1.637 -0.762 2.069 sum 25.419 -17.043 -1.905 30.663 Atomic orbital electron populations 1.69907 1.06234 1.26794 1.51006 1.24984 0.94777 0.98885 0.94766 0.86820 0.80461 0.83833 0.78451 1.20239 1.21249 1.18905 1.20922 0.88153 0.94873 1.50549 0.90561 1.18153 0.97773 0.84489 0.97533 1.22513 0.95955 0.99160 0.92226 1.23359 1.08073 0.85290 1.05783 1.46981 1.32220 1.09576 1.21199 1.21545 0.92152 0.91397 0.94528 1.22644 0.92788 0.91296 0.95779 1.87897 1.50707 1.54925 1.34652 1.22917 0.85583 0.89287 0.85908 0.92780 1.22027 0.96763 1.00259 0.98773 1.21597 0.97536 0.99213 0.97462 1.22261 0.99004 0.99249 0.99340 1.22534 0.92416 0.95031 0.90562 1.87850 1.35669 1.62608 1.46277 1.78252 1.06847 1.21523 1.01613 1.75109 1.17475 0.95856 1.23473 0.92693 0.94416 0.95072 0.79869 0.87297 0.87851 0.92406 0.90205 0.89893 0.89935 0.90560 0.91511 0.90622 0.90397 0.88273 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.51 -14.92 9.64 -34.44 -0.33 -15.25 16 8 H 0.08 2.52 7.98 -52.48 -0.42 2.10 16 9 C 0.06 1.46 4.62 -29.04 -0.13 1.32 16 10 C 0.04 0.87 6.44 -82.78 -0.53 0.34 16 11 C -0.08 -1.35 11.49 -17.04 -0.20 -1.54 16 12 N -0.30 -5.05 3.44 -61.26 -0.21 -5.26 16 13 C 0.13 1.46 6.82 -4.04 -0.03 1.43 16 14 C 0.05 0.60 5.94 37.16 0.22 0.82 16 15 O -0.36 -3.97 10.26 -59.04 -0.61 -4.57 16 16 C 0.26 2.42 3.16 37.20 0.12 2.54 16 17 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 18 C -0.14 -0.98 5.79 -26.60 -0.15 -1.13 16 19 C -0.12 -0.62 6.03 -26.55 -0.16 -0.78 16 20 C -0.16 -0.86 6.14 -26.59 -0.16 -1.03 16 21 C 0.07 0.50 6.84 37.21 0.25 0.76 16 22 O -0.40 -4.31 10.25 -59.04 -0.60 -4.92 16 23 N -0.10 -2.14 12.92 60.35 0.78 -1.36 16 24 N -0.25 -6.06 12.40 33.29 0.41 -5.65 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.04 0.93 7.20 -51.93 -0.37 0.55 16 27 H 0.03 0.70 7.55 -51.93 -0.39 0.30 16 28 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 29 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -35.59 334.37 -6.54 -42.13 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.25 Total: -4.00 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -1.20 Total: -10.64 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 1.76 Total: -39.77 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.21 Total: -9.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.59 -6.54 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603196752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.972 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds