Wall clock time and date at job start Tue Mar 31 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 114.00079 * 2 1 4 4 C 1.52996 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47237 * 65.00210 * 4 3 2 6 6 C 1.46507 * 120.00103 * 269.99873 * 5 4 3 7 7 C 1.50696 * 109.47012 * 264.71898 * 6 5 4 8 8 H 1.08002 * 120.00474 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99946 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99967 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00150 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46874 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46815 * 120.00211 * 11 9 7 14 14 H 1.48502 * 109.47316 * 240.00396 * 11 9 7 15 15 C 1.34774 * 120.00115 * 89.99856 * 5 4 3 16 16 O 1.21283 * 119.99554 * 3.83558 * 15 5 4 17 17 C 1.50701 * 120.00208 * 183.83120 * 15 5 4 18 18 H 1.08992 * 109.46954 * 314.29327 * 17 15 5 19 19 C 1.52994 * 109.47011 * 74.29836 * 17 15 5 20 20 C 1.50705 * 109.47185 * 194.29646 * 17 15 5 21 21 C 1.34511 * 125.79113 * 119.99760 * 20 17 15 22 22 C 1.41381 * 106.84114 * 179.74792 * 21 20 17 23 23 C 1.34521 * 106.84088 * 0.37965 * 22 21 20 24 24 O 1.34301 * 108.41945 * 359.61963 * 23 22 21 25 25 H 1.09003 * 109.47605 * 59.99322 * 1 2 3 26 26 H 1.08999 * 109.47147 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47199 * 299.99585 * 1 2 3 28 28 H 1.09002 * 109.46586 * 60.00522 * 3 2 1 29 29 H 1.08997 * 109.47328 * 300.00646 * 3 2 1 30 30 H 1.09010 * 109.47277 * 305.00162 * 4 3 2 31 31 H 1.09004 * 109.47210 * 185.00567 * 4 3 2 32 32 H 1.08997 * 109.46860 * 24.72053 * 6 5 4 33 33 H 1.09004 * 109.46648 * 144.71660 * 6 5 4 34 34 H 0.96997 * 119.99972 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.47567 * 67.13635 * 19 17 15 36 36 H 1.09000 * 109.47167 * 187.13799 * 19 17 15 37 37 H 1.09006 * 109.46941 * 307.13627 * 19 17 15 38 38 H 1.08002 * 126.57913 * 0.02562 * 21 20 17 39 39 H 1.07998 * 126.57938 * 180.23243 * 22 21 20 40 40 H 1.08000 * 125.78933 * 179.88520 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5339 -1.2870 -1.0712 8 1 6.2716 -0.5290 -0.8529 9 6 5.8991 -2.6162 -1.1005 10 7 5.0008 -3.5393 -1.3658 11 14 7.6703 -3.1057 -0.7645 12 1 8.4776 -1.8888 -0.4953 13 1 7.7199 -4.0037 0.4172 14 1 8.2211 -3.8139 -1.9479 15 6 4.2614 1.3338 -2.3218 16 8 4.2215 2.5423 -2.2272 17 6 4.6307 0.6925 -3.6346 18 1 5.3546 -0.1032 -3.4592 19 6 3.3767 0.1069 -4.2866 20 6 5.2344 1.7285 -4.5475 21 6 6.4726 1.6895 -5.0716 22 6 6.6177 2.8497 -5.8664 23 6 5.4625 3.5326 -5.7737 24 8 4.6271 2.8472 -4.9762 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8515 0.5682 0.8410 31 1 3.9785 2.1766 0.0890 32 1 3.4523 -1.3610 -0.6067 33 1 3.8210 -1.2209 -2.3425 34 1 5.2578 -4.4744 -1.3867 35 1 2.7065 0.9159 -4.5772 36 1 3.6600 -0.4653 -5.1700 37 1 2.8700 -0.5474 -3.5770 38 1 7.2122 0.9175 -4.9186 39 1 7.4897 3.1344 -6.4365 40 1 5.2424 4.4706 -6.2616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610387313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:09 Heat of formation + Delta-G solvation = -67.418341 kcal Electronic energy + Delta-G solvation = -23018.962038 eV Core-core repulsion = 19607.964166 eV Total energy + Delta-G solvation = -3410.997872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17221 -39.27270 -37.41138 -34.90315 -33.69871 -32.60788 -32.43156 -29.76151 -28.13529 -27.03072 -25.95502 -24.24665 -22.82418 -22.38053 -21.34682 -20.16446 -18.40512 -16.91017 -16.69678 -16.38560 -15.88192 -15.73426 -15.36716 -15.11254 -14.63227 -14.45930 -14.07240 -13.67909 -13.18805 -12.95177 -12.42692 -12.37101 -12.26137 -12.12355 -11.94564 -11.59216 -11.55181 -11.44037 -11.08845 -11.02562 -10.89389 -10.79626 -10.49247 -10.10180 -9.66491 -9.53235 -9.39167 -8.99263 -8.50529 -8.05688 -7.68581 -6.14712 -4.21993 2.13804 2.97101 3.23240 3.30301 3.32617 3.37595 3.48408 3.92692 4.16030 4.36937 4.97861 5.16414 5.25320 5.38050 5.38627 5.39770 5.49935 5.59046 5.65297 5.66152 5.71335 5.81334 5.85581 6.02369 6.14702 6.17298 6.24552 6.35528 6.38184 6.40888 6.57582 6.86406 6.87900 7.34464 7.47687 7.58135 7.60904 7.82419 8.11783 8.35763 8.82565 9.02000 9.45439 10.91584 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.007825 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.875353 B = 3577.231150 C = 5505.728854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.586 5.586 6 C 0.232 3.768 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.522 3.478 16 O -0.568 6.568 17 C -0.032 4.032 18 H 0.140 0.860 19 C -0.141 4.141 20 C 0.031 3.969 21 C -0.218 4.218 22 C -0.216 4.216 23 C -0.054 4.054 24 O -0.159 6.159 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 7.826 -3.988 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.112 3.888 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.310 3.690 16 O -0.449 6.449 17 C -0.053 4.053 18 H 0.158 0.842 19 C -0.198 4.198 20 C -0.020 4.020 21 C -0.238 4.238 22 C -0.235 4.235 23 C -0.122 4.122 24 O -0.054 6.054 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.691 8.136 -3.853 10.151 hybrid contribution 1.075 -0.224 0.150 1.108 sum -3.616 7.912 -3.702 9.454 Atomic orbital electron populations 1.22681 0.82173 1.02395 0.99170 1.88053 1.18650 1.27433 1.95204 1.23029 0.95297 0.84911 0.99738 1.21342 0.91012 0.99738 0.88217 1.48108 1.63706 1.09988 1.09769 1.19654 0.97125 0.72662 0.99315 1.21604 0.94750 0.92431 1.49241 0.92149 1.24918 0.97548 0.96316 0.94863 1.69942 1.33424 1.00929 1.48279 0.86526 0.84765 0.78677 0.78050 1.19669 1.20868 1.20815 1.20184 0.76715 0.86643 0.85476 1.90613 1.54794 1.14446 1.85009 1.19987 1.00664 0.94594 0.90032 0.84246 1.21806 0.95631 1.00991 1.01392 1.21955 0.92665 0.87808 0.99592 1.21571 0.97292 1.01303 1.03590 1.21714 0.99538 0.97082 1.05157 1.23896 0.90490 0.99206 0.98611 1.84054 1.41221 1.29461 1.50617 0.94648 0.89843 0.94747 0.93224 0.93438 0.89501 0.89436 0.93148 0.93971 0.92622 0.92567 0.91438 0.90003 0.83503 0.83966 0.78762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.61 9.63 -35.23 -0.34 -6.95 16 3 C 0.05 0.79 6.28 37.16 0.23 1.02 16 4 C 0.12 2.25 5.82 -4.05 -0.02 2.23 16 5 N -0.59 -12.47 2.43 -175.06 -0.43 -12.89 16 6 C 0.23 5.48 4.48 -5.19 -0.02 5.45 16 7 C -0.54 -13.98 8.63 -34.44 -0.30 -14.27 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 11 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 C 0.52 11.25 6.84 -10.99 -0.08 11.17 16 16 O -0.57 -13.28 15.27 -6.37 -0.10 -13.38 16 17 C -0.03 -0.62 2.30 -92.92 -0.21 -0.83 16 18 H 0.14 2.86 6.81 -51.93 -0.35 2.51 16 19 C -0.14 -2.42 8.80 37.15 0.33 -2.09 16 20 C 0.03 0.59 5.34 -35.62 -0.19 0.40 16 21 C -0.22 -3.76 10.78 -39.70 -0.43 -4.19 16 22 C -0.22 -3.21 10.91 -39.70 -0.43 -3.64 16 23 C -0.05 -0.80 12.09 29.42 0.36 -0.44 16 24 O -0.16 -2.94 10.13 -6.23 -0.06 -3.00 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.62 8.07 -51.92 -0.42 1.20 16 31 H 0.09 1.59 7.37 -51.93 -0.38 1.21 16 32 H 0.05 1.29 7.23 -51.93 -0.38 0.92 16 33 H 0.04 1.01 4.74 -51.93 -0.25 0.76 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.47 6.02 -51.93 -0.31 1.16 16 38 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 39 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -30.84 337.85 -5.73 -36.57 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.86 Total: 4.61 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 0.25 Total: -2.01 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.31 Total: -36.38 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.50 Total: -23.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.84 -5.73 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.846 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds