Wall clock time and date at job start Tue Mar 31 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47107 * 2 1 4 4 C 1.34334 * 126.44472 * 90.00105 * 3 2 1 5 5 N 1.34476 * 107.67060 * 179.76989 * 4 3 2 6 6 C 1.30256 * 108.69968 * 0.41504 * 5 4 3 7 7 C 1.50696 * 125.61704 * 179.83650 * 6 5 4 8 8 N 1.46505 * 109.46873 * 89.70189 * 7 6 5 9 9 C 1.34770 * 120.00284 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99886 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00293 * 179.97438 * 9 8 7 12 12 H 1.09002 * 109.47060 * 40.00174 * 11 9 8 13 13 N 1.46896 * 109.47239 * 160.00327 * 11 9 8 14 14 C 1.52997 * 109.47212 * 280.00118 * 11 9 8 15 15 C 1.52994 * 109.47404 * 174.99684 * 14 11 9 16 16 C 1.50698 * 109.47502 * 179.97438 * 15 14 11 17 17 H 1.08005 * 119.99844 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00426 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00342 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47235 * 60.00290 * 20 18 16 22 22 H 1.48501 * 109.47463 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47109 * 300.00119 * 20 18 16 24 24 O 1.33961 * 108.75954 * 359.58266 * 6 5 4 25 25 H 1.09001 * 109.47044 * 59.99755 * 1 2 3 26 26 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47522 * 300.00203 * 1 2 3 28 28 H 1.08999 * 109.46998 * 239.99810 * 2 1 3 29 29 H 1.09001 * 109.47044 * 120.00245 * 2 1 3 30 30 H 1.08007 * 126.16033 * 0.02562 * 4 3 2 31 31 H 1.08996 * 109.47693 * 329.70234 * 7 6 5 32 32 H 1.09004 * 109.47243 * 209.69560 * 7 6 5 33 33 H 0.97004 * 120.00069 * 359.97438 * 8 7 6 34 34 H 1.00900 * 111.00550 * 59.99964 * 13 11 9 35 35 H 1.00896 * 111.00310 * 183.95550 * 13 11 9 36 36 H 1.09000 * 109.47325 * 294.99852 * 14 11 9 37 37 H 1.09008 * 109.47017 * 54.99761 * 14 11 9 38 38 H 1.09000 * 109.47476 * 300.00087 * 15 14 11 39 39 H 1.09008 * 109.46970 * 60.00049 * 15 14 11 40 40 H 0.97002 * 119.99862 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7276 3.3718 0.6478 6 6 2.7215 3.3722 -0.6547 7 6 3.1289 4.5263 -1.5339 8 7 4.5633 4.4403 -1.8191 9 6 5.1537 5.3727 -2.5926 10 8 4.4976 6.2834 -3.0522 11 6 6.6293 5.2846 -2.8856 12 1 6.9038 4.2441 -3.0591 13 7 6.9394 6.0789 -4.0817 14 6 7.4193 5.8283 -1.6935 15 6 8.9159 5.6247 -1.9377 16 6 9.6940 6.1608 -0.7638 17 1 9.1732 6.6022 0.0730 18 6 11.0708 6.0878 -0.7581 19 7 11.7051 5.5507 -1.7773 20 14 12.0354 6.7517 0.6974 21 1 11.6327 6.0277 1.9298 22 1 13.4880 6.5552 0.4597 23 1 11.7523 8.2004 0.8594 24 8 2.2987 2.1757 -1.0839 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1911 1.8686 2.1113 31 1 2.9157 5.4653 -1.0230 32 1 2.5696 4.4862 -2.4686 33 1 5.0882 3.7122 -1.4512 34 1 6.6940 7.0481 -3.9459 35 1 7.9111 5.9843 -4.3367 36 1 7.2120 6.8918 -1.5748 37 1 7.1233 5.2972 -0.7887 38 1 9.1233 4.5612 -2.0564 39 1 9.2119 6.1557 -2.8425 40 1 12.6737 5.4989 -1.7731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691595021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:32 Heat of formation + Delta-G solvation = -33.934169 kcal Electronic energy + Delta-G solvation = -21219.394951 eV Core-core repulsion = 17842.141812 eV Total energy + Delta-G solvation = -3377.253138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.66184 -39.67161 -35.79719 -35.22479 -34.97194 -34.29713 -32.84864 -30.26583 -29.87583 -27.53475 -25.95314 -24.10662 -23.57911 -22.33849 -21.19554 -20.79327 -19.90041 -17.80816 -17.29466 -16.79558 -16.19849 -15.99907 -15.49283 -15.08258 -14.87028 -14.56305 -14.46119 -14.00848 -13.64386 -13.53139 -13.25089 -13.10756 -12.97131 -12.65561 -12.19502 -12.13949 -11.72688 -11.68965 -11.59569 -11.08633 -10.91153 -10.76785 -10.70815 -9.99676 -9.98422 -9.38668 -9.25011 -9.18569 -9.00834 -8.43143 -8.20822 -6.07869 -4.10924 1.02496 2.21159 2.32940 2.84102 3.28835 3.29718 3.34180 3.37128 3.69517 4.29034 4.40307 4.51920 4.66324 4.73361 4.85946 4.99203 5.11805 5.17190 5.28294 5.29789 5.31780 5.34655 5.50365 5.56436 5.66633 5.74377 5.75493 5.96998 6.25272 6.29471 6.51916 6.87562 7.35093 7.42545 7.51209 7.57561 7.64153 7.88602 7.90044 8.30910 8.34103 8.94832 9.53960 11.03041 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003157 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.365369 B = 8865.736214 C = 9793.527220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.037 4.037 4 C -0.041 4.041 5 N -0.458 5.458 6 C 0.171 3.829 7 C 0.223 3.777 8 N -0.732 5.732 9 C 0.531 3.469 10 O -0.534 6.534 11 C 0.077 3.923 12 H 0.098 0.902 13 N -0.830 5.830 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 O -0.194 6.194 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.185 0.815 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.406 0.594 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.612 -11.332 2.429 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C -0.091 4.091 4 C -0.181 4.181 5 N -0.188 5.188 6 C -0.036 4.036 7 C 0.099 3.901 8 N -0.388 5.388 9 C 0.319 3.681 10 O -0.409 6.409 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.363 5.363 14 C -0.178 4.178 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.080 6.080 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.202 0.798 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.240 0.760 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.261 -10.652 1.931 23.858 hybrid contribution 1.325 -0.166 1.435 1.960 sum -19.936 -10.818 3.367 22.931 Atomic orbital electron populations 1.21808 0.93563 1.02687 1.02806 1.20105 0.96538 0.86329 1.04731 1.23603 1.04726 0.96208 0.84551 1.23144 1.04596 0.89788 1.00525 1.70497 1.16679 1.22577 1.09022 1.26100 1.00826 0.86376 0.90316 1.19421 0.83087 0.90845 0.96767 1.45981 1.08257 1.30775 1.53802 1.20942 0.90258 0.80607 0.76322 1.90654 1.65723 1.33613 1.50892 1.21457 0.89394 1.00390 0.92582 0.88431 1.58740 1.27645 1.15478 1.34417 1.22397 0.99301 1.00428 0.95678 1.19099 0.87530 0.97294 0.97327 1.21149 0.91390 1.39634 1.04066 0.92725 1.25009 0.97913 0.95262 0.96126 1.69940 1.08514 1.44595 1.30223 0.86636 0.78813 0.79562 0.82889 1.20204 1.21228 1.20199 1.84414 1.63652 1.23351 1.36588 0.92216 0.91231 0.92004 0.89621 0.88253 0.79765 0.87210 0.88607 0.75951 0.84056 0.82907 0.92507 0.92428 0.96339 0.96354 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.04 -0.22 6.49 -27.89 -0.18 -0.40 16 3 C -0.04 -0.35 6.64 -35.69 -0.24 -0.59 16 4 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 5 N -0.46 -5.97 11.29 -11.10 -0.13 -6.09 16 6 C 0.17 2.06 7.71 -12.95 -0.10 1.96 16 7 C 0.22 2.65 6.30 -5.19 -0.03 2.61 16 8 N -0.73 -9.73 5.55 -61.47 -0.34 -10.07 16 9 C 0.53 8.66 7.08 -10.99 -0.08 8.58 16 10 O -0.53 -10.07 16.25 5.55 0.09 -9.98 16 11 C 0.08 1.30 3.21 -68.87 -0.22 1.08 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.83 -14.15 8.94 -5.66 -0.05 -14.20 16 14 C -0.14 -2.72 4.78 -26.74 -0.13 -2.85 16 15 C 0.02 0.60 4.74 -27.89 -0.13 0.47 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 O -0.19 -2.22 10.77 5.38 0.06 -2.16 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.19 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.41 4.94 8.46 -40.82 -0.35 4.60 16 34 H 0.35 5.95 8.58 -39.29 -0.34 5.62 16 35 H 0.36 6.07 7.55 -39.29 -0.30 5.77 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.46 6.87 -51.92 -0.36 0.10 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -32.85 345.29 -6.76 -39.62 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.95 Total: 10.04 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.36 Total: -3.37 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.22 Total: -55.76 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.15 Total: -12.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.85 -6.76 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691595021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.682 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds