Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47107 * 2 1 4 4 C 1.34334 * 126.44472 * 90.00105 * 3 2 1 5 5 N 1.34476 * 107.67060 * 179.76989 * 4 3 2 6 6 C 1.30256 * 108.69968 * 0.41504 * 5 4 3 7 7 C 1.50696 * 125.61704 * 179.83650 * 6 5 4 8 8 N 1.46505 * 109.46873 * 89.70189 * 7 6 5 9 9 C 1.34770 * 120.00284 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99886 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00293 * 179.97438 * 9 8 7 12 12 H 1.09002 * 109.47060 * 40.00174 * 11 9 8 13 13 N 1.46896 * 109.47239 * 160.00327 * 11 9 8 14 14 C 1.52997 * 109.47212 * 280.00118 * 11 9 8 15 15 C 1.52994 * 109.47404 * 174.99684 * 14 11 9 16 16 C 1.50698 * 109.47502 * 179.97438 * 15 14 11 17 17 H 1.08005 * 119.99844 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00426 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00342 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47235 * 60.00290 * 20 18 16 22 22 H 1.48501 * 109.47463 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47109 * 300.00119 * 20 18 16 24 24 O 1.33961 * 108.75954 * 359.58266 * 6 5 4 25 25 H 1.09001 * 109.47044 * 59.99755 * 1 2 3 26 26 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47522 * 300.00203 * 1 2 3 28 28 H 1.08999 * 109.46998 * 239.99810 * 2 1 3 29 29 H 1.09001 * 109.47044 * 120.00245 * 2 1 3 30 30 H 1.08007 * 126.16033 * 0.02562 * 4 3 2 31 31 H 1.08996 * 109.47693 * 329.70234 * 7 6 5 32 32 H 1.09004 * 109.47243 * 209.69560 * 7 6 5 33 33 H 0.97004 * 120.00069 * 359.97438 * 8 7 6 34 34 H 1.00900 * 111.00550 * 59.99964 * 13 11 9 35 35 H 1.00896 * 111.00310 * 183.95550 * 13 11 9 36 36 H 1.09000 * 109.47325 * 294.99852 * 14 11 9 37 37 H 1.09008 * 109.47017 * 54.99761 * 14 11 9 38 38 H 1.09000 * 109.47476 * 300.00087 * 15 14 11 39 39 H 1.09008 * 109.46970 * 60.00049 * 15 14 11 40 40 H 0.97002 * 119.99862 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7276 3.3718 0.6478 6 6 2.7215 3.3722 -0.6547 7 6 3.1289 4.5263 -1.5339 8 7 4.5633 4.4403 -1.8191 9 6 5.1537 5.3727 -2.5926 10 8 4.4976 6.2834 -3.0522 11 6 6.6293 5.2846 -2.8856 12 1 6.9038 4.2441 -3.0591 13 7 6.9394 6.0789 -4.0817 14 6 7.4193 5.8283 -1.6935 15 6 8.9159 5.6247 -1.9377 16 6 9.6940 6.1608 -0.7638 17 1 9.1732 6.6022 0.0730 18 6 11.0708 6.0878 -0.7581 19 7 11.7051 5.5507 -1.7773 20 14 12.0354 6.7517 0.6974 21 1 11.6327 6.0277 1.9298 22 1 13.4880 6.5552 0.4597 23 1 11.7523 8.2004 0.8594 24 8 2.2987 2.1757 -1.0839 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1911 1.8686 2.1113 31 1 2.9157 5.4653 -1.0230 32 1 2.5696 4.4862 -2.4686 33 1 5.0882 3.7122 -1.4512 34 1 6.6940 7.0481 -3.9459 35 1 7.9111 5.9843 -4.3367 36 1 7.2120 6.8918 -1.5748 37 1 7.1233 5.2972 -0.7887 38 1 9.1233 4.5612 -2.0564 39 1 9.2119 6.1557 -2.8425 40 1 12.6737 5.4989 -1.7731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691595021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = -60.248471 kcal Electronic energy + Delta-G solvation = -21220.536024 eV Core-core repulsion = 17842.141812 eV Total energy + Delta-G solvation = -3378.394212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.48963 -40.98428 -37.23420 -36.38148 -35.80834 -35.00600 -34.84089 -31.68920 -31.15390 -28.64514 -27.39750 -25.43760 -24.53737 -23.19373 -22.42826 -21.97343 -21.26891 -19.10883 -18.36876 -18.18773 -17.62366 -17.04367 -16.63240 -16.37356 -16.08443 -15.75908 -15.56855 -15.30843 -14.87641 -14.63142 -14.37793 -14.20397 -14.09475 -13.81824 -13.47027 -13.42711 -12.93498 -12.68663 -12.62728 -12.54583 -12.51303 -12.13428 -11.80928 -11.74608 -11.56840 -11.32186 -10.88944 -10.55891 -10.33733 -9.84157 -9.63981 -8.21702 -6.31930 0.19731 1.37238 1.39727 1.41212 1.48913 1.50945 1.53556 2.19930 2.39974 2.86161 3.11892 3.64941 3.69987 3.74975 3.96706 4.02066 4.11752 4.22986 4.26315 4.28817 4.36967 4.49305 4.65587 4.67601 4.83362 4.87648 4.98861 5.07870 5.12905 5.16195 5.20430 5.31755 5.46429 5.65533 5.80507 6.04199 6.21244 6.34155 6.48692 6.59160 6.83293 7.07058 7.37060 8.88885 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003157 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.365369 B = 8865.736214 C = 9793.527220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.029 4.029 4 C -0.059 4.059 5 N -0.484 5.484 6 C 0.158 3.842 7 C 0.226 3.774 8 N -0.719 5.719 9 C 0.536 3.464 10 O -0.561 6.561 11 C 0.083 3.917 12 H 0.111 0.889 13 N -0.828 5.828 14 C -0.122 4.122 15 C 0.030 3.970 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.271 1.271 24 O -0.203 6.203 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.210 0.790 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.412 0.588 34 H 0.345 0.655 35 H 0.354 0.646 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.002 0.998 39 H 0.005 0.995 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.458 -12.454 3.570 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C -0.082 4.082 4 C -0.197 4.197 5 N -0.215 5.215 6 C -0.048 4.048 7 C 0.102 3.898 8 N -0.374 5.374 9 C 0.323 3.677 10 O -0.438 6.438 11 C -0.032 4.032 12 H 0.128 0.872 13 N -0.360 5.360 14 C -0.162 4.162 15 C -0.007 4.007 16 C -0.584 4.584 17 H 0.072 0.928 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.196 1.196 24 O -0.090 6.090 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.226 0.774 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.248 0.752 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.127 -11.800 3.085 25.265 hybrid contribution 1.532 0.096 1.103 1.890 sum -20.595 -11.704 4.188 24.056 Atomic orbital electron populations 1.21801 0.92830 1.03788 1.02192 1.20359 0.97011 0.84060 1.06201 1.24373 1.02935 0.97197 0.83742 1.23614 1.04971 0.89144 1.02019 1.70461 1.17307 1.24155 1.09565 1.25930 1.02002 0.86763 0.90143 1.19433 0.81980 0.91003 0.97339 1.45852 1.09113 1.29985 1.52452 1.20671 0.89764 0.80722 0.76560 1.90646 1.66136 1.34805 1.52229 1.21379 0.89799 1.00833 0.91218 0.87156 1.58757 1.27475 1.15507 1.34276 1.22145 0.96684 1.00119 0.97230 1.18967 0.90262 0.95673 0.95808 1.21600 0.92186 1.39656 1.04995 0.92799 1.25857 0.99065 0.95525 0.98848 1.70051 1.08837 1.45683 1.32054 0.85604 0.77375 0.79067 0.79637 1.19343 1.20732 1.19587 1.84417 1.63694 1.23342 1.37507 0.93495 0.89278 0.91973 0.89056 0.85841 0.77366 0.87398 0.87544 0.75187 0.84143 0.83087 0.93383 0.91878 0.97995 0.97682 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.39 16 2 C -0.04 -0.34 6.49 29.85 0.19 -0.15 16 3 C -0.03 -0.50 6.64 24.79 0.16 -0.33 16 4 C -0.06 -1.12 11.80 83.40 0.98 -0.14 16 5 N -0.48 -12.24 11.29 -303.83 -3.43 -15.67 16 6 C 0.16 3.70 7.71 88.34 0.68 4.39 16 7 C 0.23 5.22 6.30 85.63 0.54 5.76 16 8 N -0.72 -18.47 5.55 -466.78 -2.59 -21.06 16 9 C 0.54 17.05 7.08 87.66 0.62 17.67 16 10 O -0.56 -20.86 16.25 -3.05 -0.05 -20.90 16 11 C 0.08 2.76 3.21 44.17 0.14 2.90 16 12 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 13 N -0.83 -28.05 8.94 -171.81 -1.54 -29.59 16 14 C -0.12 -4.77 4.78 30.59 0.15 -4.62 16 15 C 0.03 1.48 4.74 29.85 0.14 1.62 16 16 C -0.55 -30.24 9.11 25.60 0.23 -30.01 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.31 5.46 84.65 0.46 0.78 16 19 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 20 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 O -0.20 -4.45 10.77 -3.66 -0.04 -4.49 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 33 H 0.41 9.60 8.46 -92.71 -0.78 8.82 16 34 H 0.35 11.86 8.58 -89.69 -0.77 11.09 16 35 H 0.35 12.16 7.55 -89.70 -0.68 11.48 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.00 0.25 6.87 -2.38 -0.02 0.24 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -69.54 345.29 -1.47 -71.01 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -1.16 Total: 31.73 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.02 Total: -2.52 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -7.27 Total: -120.54 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.09 Total: -25.39 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.54 -1.47 -71.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691595021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.759 kcal (2) G-P(sol) polarization free energy of solvation -69.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds