Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28301 * 2 1 4 4 O 1.21309 * 110.24521 * 179.73128 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00218 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00208 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00107 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46953 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47143 * 299.99802 * 12 11 10 14 14 C 1.53000 * 109.47701 * 59.99620 * 12 11 10 15 15 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 16 16 H 1.07995 * 119.99651 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99997 * 180.02562 * 15 12 11 18 18 N 1.31520 * 120.00062 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99864 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47102 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47057 * 119.99935 * 19 17 15 22 22 H 1.48500 * 109.47389 * 239.99916 * 19 17 15 23 23 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 24 24 H 1.09001 * 109.46720 * 269.97027 * 1 2 3 25 25 H 1.08998 * 109.47458 * 29.96895 * 1 2 3 26 26 H 1.09000 * 109.47577 * 149.97125 * 1 2 3 27 27 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 28 28 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 29 29 H 1.09001 * 109.46832 * 299.99686 * 7 6 5 30 30 H 1.09004 * 109.47261 * 59.99705 * 7 6 5 31 31 H 0.97006 * 119.99798 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47062 * 299.99546 * 11 10 8 33 33 H 1.08996 * 109.47565 * 60.00082 * 11 10 8 34 34 H 1.08992 * 109.47060 * 59.99979 * 13 12 11 35 35 H 1.09004 * 109.47059 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46930 * 300.00065 * 13 12 11 37 37 H 1.09001 * 109.46503 * 59.99819 * 14 12 11 38 38 H 1.08996 * 109.47966 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46994 * 300.00314 * 14 12 11 40 40 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0053 5 6 3.5298 -0.6211 -0.0009 6 6 4.7969 -1.4370 -0.0016 7 6 5.2252 -1.7126 -1.4443 8 6 6.4926 -2.5279 -1.4450 9 8 7.0028 -2.8566 -0.3950 10 7 7.0586 -2.8928 -2.6125 11 6 8.2904 -3.6858 -2.6132 12 6 8.7187 -3.9613 -4.0559 13 6 7.6134 -4.7354 -4.7771 14 6 8.9659 -2.6347 -4.7768 15 6 9.9862 -4.7766 -4.0566 16 1 10.4409 -5.0686 -3.1216 17 6 10.5658 -5.1488 -5.2510 18 7 10.0123 -4.7928 -6.3897 19 14 12.1372 -6.1588 -5.2518 20 1 12.5537 -6.4276 -3.8520 21 1 11.8979 -7.4461 -5.9524 22 1 13.2091 -5.4062 -5.9518 23 7 2.3030 -1.0841 -0.0006 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5143 27 1 5.5844 -0.8855 0.5121 28 1 4.6209 -2.3821 0.5121 29 1 4.4377 -2.2641 -1.9580 30 1 5.4013 -0.7675 -1.9580 31 1 6.6500 -2.6308 -3.4524 32 1 9.0779 -3.1341 -2.0998 33 1 8.1144 -4.6308 -2.0993 34 1 6.6970 -4.1454 -4.7766 35 1 7.9188 -4.9321 -5.8048 36 1 7.4373 -5.6806 -4.2635 37 1 9.7533 -2.0833 -4.2630 38 1 9.2715 -2.8309 -5.8045 39 1 8.0494 -2.0446 -4.7763 40 1 10.4200 -5.0550 -7.2299 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701197868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = 12.015133 kcal Electronic energy + Delta-G solvation = -21499.032385 eV Core-core repulsion = 18123.771758 eV Total energy + Delta-G solvation = -3375.260627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.80050 -39.48476 -36.57554 -36.29881 -34.76159 -33.34656 -31.79091 -30.80812 -29.41335 -26.62318 -25.76314 -25.41463 -24.37881 -23.53372 -21.48822 -20.10676 -18.83690 -18.35633 -17.67154 -17.01206 -15.84383 -15.71498 -15.23348 -14.98086 -14.53701 -14.31892 -13.91518 -13.75204 -13.33982 -13.05159 -12.89502 -12.78668 -12.55147 -12.39472 -12.21964 -11.56499 -11.47128 -11.35203 -11.23521 -11.22802 -10.90335 -10.68756 -10.42624 -10.23547 -10.14523 -9.67451 -9.66107 -9.29748 -8.81325 -8.51216 -8.36448 -6.05066 -4.15171 0.89834 1.97013 2.55174 2.92473 3.25461 3.34160 3.35537 3.38970 3.69308 3.83189 4.37965 4.55102 4.69996 4.81795 5.03350 5.05989 5.11886 5.21967 5.30404 5.37563 5.54829 5.60086 5.73414 5.79456 6.18269 6.28467 6.46776 6.72742 6.78512 6.88458 6.96410 6.97987 7.31570 7.52093 7.66777 7.93755 7.96345 7.97724 8.11023 8.34915 8.58703 8.85871 9.51013 10.96376 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.044788 B = 0.002732 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.015278 B =10246.723497 C =10441.684300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.389 5.389 4 O 0.077 5.923 5 C 0.192 3.808 6 C -0.012 4.012 7 C -0.140 4.140 8 C 0.508 3.492 9 O -0.552 6.552 10 N -0.714 5.714 11 C 0.131 3.869 12 C 0.055 3.945 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.505 4.505 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.482 5.482 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.399 0.601 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.006 0.994 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 8.538 8.118 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.028 4.028 6 C -0.051 4.051 7 C -0.182 4.182 8 C 0.293 3.707 9 O -0.431 6.431 10 N -0.364 5.364 11 C 0.009 3.991 12 C 0.054 3.946 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.217 5.217 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.234 0.766 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.161 8.779 8.659 19.543 hybrid contribution 0.772 -0.443 -0.534 1.038 sum -14.389 8.337 8.125 18.508 Atomic orbital electron populations 1.20134 0.82975 1.04687 1.04255 1.25937 1.00640 0.83606 1.00521 1.74647 0.89453 1.23986 1.21763 1.85305 1.22287 1.24913 1.65609 1.28928 0.97064 0.82055 0.94801 1.19998 0.87583 0.98992 0.98549 1.21639 0.97601 1.02219 0.96707 1.20201 0.85416 0.80544 0.84494 1.90695 1.64593 1.56513 1.31318 1.46313 1.28010 1.54349 1.07764 1.21746 0.83277 0.93438 1.00664 1.18368 0.94703 0.93617 0.87869 1.21839 0.95049 0.97724 1.04323 1.21840 0.96718 0.96049 1.04330 1.21022 1.07721 1.32974 0.92682 0.92355 1.24887 0.97314 0.95829 0.95536 1.69815 1.39441 1.46002 0.97203 0.86516 0.83288 0.79915 0.78169 1.19742 1.21063 1.21059 1.71942 0.99761 1.29321 1.20652 0.89370 0.89541 0.88972 0.86986 0.86227 0.88128 0.88267 0.76567 0.92570 0.92580 0.97486 0.89580 0.95399 0.95395 0.89576 0.97486 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.17 1.83 8.22 -156.37 -1.28 0.55 16 3 N -0.39 -4.77 12.16 30.90 0.38 -4.39 16 4 O 0.08 0.89 11.31 18.11 0.20 1.10 16 5 C 0.19 2.09 7.77 -13.05 -0.10 1.99 16 6 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 7 C -0.14 -1.44 5.68 -27.89 -0.16 -1.60 16 8 C 0.51 7.58 7.83 -10.99 -0.09 7.50 16 9 O -0.55 -10.11 15.98 5.56 0.09 -10.03 16 10 N -0.71 -11.56 4.96 -60.30 -0.30 -11.86 16 11 C 0.13 2.64 4.50 -4.05 -0.02 2.62 16 12 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 13 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 14 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 15 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 18 N -0.89 -23.23 9.35 55.43 0.52 -22.71 16 19 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.48 -5.76 11.55 -9.87 -0.11 -5.88 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.11 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.12 1.20 8.10 -51.93 -0.42 0.78 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 5.80 6.16 -40.82 -0.25 5.55 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 35 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -29.57 333.18 -6.27 -35.83 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.78 Total: 2.36 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.26 Total: -4.84 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.48 Total: -44.84 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.29 Total: -8.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.57 -6.27 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701197868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.847 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds