Wall clock time and date at job start Tue Mar 31 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46877 * 2 1 4 4 C 1.46500 * 120.00122 * 270.00036 * 3 2 1 5 5 C 1.50700 * 109.47101 * 270.00350 * 4 3 2 6 6 H 1.08006 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00111 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47218 * 60.00180 * 9 7 5 11 11 H 1.48503 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47200 * 299.99457 * 9 7 5 13 13 C 1.34779 * 119.99713 * 90.00647 * 3 2 1 14 14 O 1.21282 * 119.99926 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00033 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34232 * 116.99878 * 179.97438 * 16 15 13 18 18 O 1.20825 * 120.00049 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99727 * 180.02562 * 17 16 15 20 20 C 1.54640 * 111.03811 * 292.01939 * 19 17 16 21 21 C 1.51103 * 104.72659 * 217.33633 * 20 19 17 22 22 C 1.30525 * 111.10142 * 16.44034 * 21 20 19 23 23 C 1.51096 * 111.10892 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47062 * 299.99624 * 1 2 3 26 26 H 1.09003 * 109.47589 * 59.99719 * 1 2 3 27 27 H 1.09002 * 109.46533 * 240.00001 * 2 1 3 28 28 H 1.08998 * 109.47148 * 120.00124 * 2 1 3 29 29 H 1.08993 * 109.46833 * 30.00250 * 4 3 2 30 30 H 1.08999 * 109.46628 * 150.00435 * 4 3 2 31 31 H 0.96998 * 120.00012 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47103 * 60.00241 * 15 13 3 33 33 H 1.09000 * 109.47247 * 300.00119 * 15 13 3 34 34 H 1.08996 * 110.91882 * 56.03791 * 19 17 16 35 35 H 1.09001 * 110.38612 * 336.15171 * 20 19 17 36 36 H 1.09002 * 110.38008 * 98.52606 * 20 19 17 37 37 H 1.07994 * 124.44404 * 196.45641 * 21 20 19 38 38 H 1.08003 * 124.43745 * 180.02562 * 22 21 20 39 39 H 1.08997 * 110.38923 * 224.75399 * 23 22 21 40 40 H 1.08997 * 110.48266 * 102.42338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9133 2.0964 -3.4171 10 1 6.1400 0.6398 -3.5956 11 1 6.1608 2.7966 -4.7031 12 1 6.8412 2.6187 -2.3820 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1959 3.5760 17 6 2.1336 1.7124 4.8164 18 8 1.7344 0.5831 4.9747 19 6 2.4386 2.5783 6.0115 20 6 3.9558 2.8559 6.1232 21 6 4.2419 2.8349 7.6067 22 6 3.2674 2.2689 8.2653 23 6 2.1687 1.8187 7.3310 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5816 1.6878 -2.0283 30 1 2.0954 3.1411 -1.1382 31 1 3.6755 3.5178 -4.4430 32 1 2.6214 0.4185 2.5301 33 1 0.9433 1.0123 2.5299 34 1 1.8718 3.5084 5.9730 35 1 4.5230 2.0754 5.6159 36 1 4.1947 3.8334 5.7041 37 1 5.1353 3.2358 8.0622 38 1 3.2487 2.1403 9.3374 39 1 1.1929 2.0907 7.7333 40 1 2.2245 0.7425 7.1671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741046136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:27 Heat of formation + Delta-G solvation = -104.080022 kcal Electronic energy + Delta-G solvation = -21933.155546 eV Core-core repulsion = 18520.567905 eV Total energy + Delta-G solvation = -3412.587642 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85064 -39.16480 -38.18415 -36.31345 -35.31199 -32.85519 -30.47440 -30.15647 -28.90462 -28.42822 -26.52607 -23.45692 -23.06758 -22.33705 -20.21195 -19.10277 -18.66334 -17.88431 -16.88062 -16.71766 -16.43385 -16.12045 -15.94286 -15.25967 -14.55961 -14.36197 -13.62767 -13.40110 -13.29682 -13.05402 -12.73334 -12.48343 -12.41772 -12.13591 -12.07090 -11.97627 -11.64248 -11.59256 -11.41992 -11.24367 -10.96762 -10.88514 -10.61609 -10.54976 -10.48655 -10.15958 -9.69149 -9.17524 -9.00886 -8.45552 -7.76847 -6.06836 -4.11929 1.96616 2.10539 2.43795 3.23630 3.31203 3.35538 3.39390 3.84020 4.15633 4.32482 4.42725 4.69739 4.86140 4.90437 4.96505 5.13064 5.19149 5.23533 5.27777 5.35461 5.43389 5.50817 5.57322 5.59866 5.70627 5.71817 5.85046 5.98398 6.17735 6.22031 6.35807 6.43412 6.57359 6.98385 7.38242 7.45656 7.67515 7.89069 8.19150 8.28319 8.83082 8.97866 9.53143 11.01320 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003790 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.189885 B = 7386.589825 C = 8276.684687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.048 3.952 16 O -0.326 6.326 17 C 0.471 3.529 18 O -0.511 6.511 19 C -0.088 4.088 20 C -0.090 4.090 21 C -0.163 4.163 22 C -0.166 4.166 23 C -0.090 4.090 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -4.653 19.059 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.240 6.240 17 C 0.313 3.687 18 O -0.399 6.399 19 C -0.108 4.108 20 C -0.127 4.127 21 C -0.181 4.181 22 C -0.184 4.184 23 C -0.127 4.127 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.097 0.903 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.653 -4.264 18.846 19.665 hybrid contribution 0.887 -0.400 -0.450 1.072 sum -2.766 -4.664 18.396 19.179 Atomic orbital electron populations 1.22235 0.96528 1.01697 1.02411 1.21508 0.93762 0.83961 1.03019 1.48214 1.63822 1.13398 1.07145 1.19322 0.96447 0.93697 0.77552 1.21395 0.96875 1.32171 1.06427 0.92442 1.24929 0.97923 0.94837 0.96324 1.69919 1.35759 1.33251 1.14384 0.86543 0.84687 0.78268 0.77844 1.20230 1.21141 1.20134 1.19711 0.79738 0.87158 0.84294 1.90717 1.44462 1.17502 1.86735 1.22986 1.02691 0.92686 0.84526 1.86580 1.78274 1.44865 1.14292 1.23485 0.73869 0.86723 0.84580 1.90640 1.42610 1.20028 1.86653 1.21871 0.99618 0.99267 0.90004 1.21316 0.92494 1.03731 0.95167 1.23259 0.99407 1.00390 0.95032 1.23244 0.96196 0.99660 0.99276 1.21362 0.98660 1.01610 0.91086 0.91891 0.93153 0.91767 0.89406 0.91774 0.94638 0.93713 0.92597 0.88709 0.88755 0.86278 0.89960 0.89258 0.85233 0.85316 0.90253 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.74 7.75 -10.99 -0.09 10.66 16 14 O -0.52 -13.37 16.08 -14.11 -0.23 -13.60 16 15 C 0.05 0.79 4.50 36.01 0.16 0.96 16 16 O -0.33 -5.42 9.76 -45.91 -0.45 -5.87 16 17 C 0.47 6.63 7.19 36.00 0.26 6.89 16 18 O -0.51 -7.91 15.26 -18.75 -0.29 -8.20 16 19 C -0.09 -0.95 3.66 -90.06 -0.33 -1.28 16 20 C -0.09 -0.91 6.37 -26.82 -0.17 -1.08 16 21 C -0.16 -1.37 10.78 -35.70 -0.38 -1.76 16 22 C -0.17 -1.34 10.77 -35.70 -0.38 -1.73 16 23 C -0.09 -0.84 6.18 -26.84 -0.17 -1.00 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.64 7.22 -51.92 -0.37 0.27 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.09 1.41 7.39 -51.93 -0.38 1.02 16 33 H 0.09 1.35 7.18 -51.93 -0.37 0.97 16 34 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.90 7.88 -51.93 -0.41 0.49 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.01 6.96 -51.93 -0.36 0.65 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -33.75 340.65 -7.70 -41.45 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.96 Total: -1.31 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.19 Total: 4.17 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.31 Total: -38.51 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.96 Total: -27.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.75 -7.70 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741046136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.634 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds