Wall clock time and date at job start Tue Mar 31 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46894 * 2 1 4 4 C 1.46765 * 124.34436 * 90.00343 * 3 2 1 5 5 C 1.54488 * 105.47266 * 162.96077 * 4 3 2 6 6 H 1.08995 * 110.96998 * 143.56724 * 5 4 3 7 7 C 1.50706 * 110.96850 * 267.29694 * 5 4 3 8 8 O 1.20822 * 120.00067 * 356.91019 * 7 5 4 9 9 O 1.34231 * 119.99642 * 176.90991 * 7 5 4 10 10 C 1.45199 * 116.99565 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.50698 * 115.55099 * 39.88800 * 11 10 9 13 13 H 1.08005 * 120.00043 * 264.97491 * 12 11 10 14 14 C 1.37870 * 119.99900 * 84.97541 * 12 11 10 15 15 N 1.31519 * 120.00425 * 358.48497 * 14 12 11 16 16 Si 1.86806 * 119.99766 * 178.48988 * 14 12 11 17 17 H 1.48496 * 109.47450 * 60.00111 * 16 14 12 18 18 H 1.48509 * 109.46897 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47035 * 299.99579 * 16 14 12 20 20 C 1.52996 * 117.49482 * 254.18420 * 11 10 9 21 21 C 1.52993 * 117.49701 * 185.56280 * 11 10 9 22 22 C 1.54627 * 101.79490 * 25.43303 * 5 4 3 23 23 C 1.34422 * 124.35413 * 269.97479 * 3 2 1 24 24 O 1.21275 * 124.93898 * 0.46619 * 23 3 2 25 25 H 1.08992 * 109.47202 * 299.99435 * 1 2 3 26 26 H 1.08999 * 109.47210 * 59.99811 * 1 2 3 27 27 H 1.08999 * 109.46738 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46975 * 240.00610 * 2 1 3 29 29 H 1.08999 * 109.47210 * 120.00189 * 2 1 3 30 30 H 1.09001 * 110.25097 * 43.96231 * 4 3 2 31 31 H 1.08996 * 110.32133 * 281.99671 * 4 3 2 32 32 H 1.09001 * 109.47128 * 299.99858 * 10 9 7 33 33 H 1.09000 * 109.47125 * 60.00045 * 10 9 7 34 34 H 0.96990 * 120.00134 * 180.02562 * 15 14 12 35 35 H 1.09003 * 117.50407 * 359.97438 * 20 11 10 36 36 H 1.09003 * 117.50095 * 145.01983 * 20 11 10 37 37 H 1.09006 * 117.49771 * 214.97769 * 21 11 10 38 38 H 1.08997 * 117.50271 * 359.96821 * 21 11 10 39 39 H 1.09000 * 110.48642 * 93.86794 * 22 5 4 40 40 H 1.09012 * 110.48484 * 216.50293 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1618 1.2118 5 6 3.1749 3.3438 0.7489 6 1 2.9317 4.2512 1.3016 7 6 4.6386 3.0104 0.8820 8 8 4.9763 1.9527 1.3585 9 8 5.5669 3.8886 0.4712 10 6 6.9571 3.5004 0.6295 11 6 7.8615 4.6200 0.1101 12 6 7.4144 6.0214 0.4376 13 1 6.8293 6.5823 -0.2762 14 6 7.7524 6.5875 1.6485 15 7 8.4395 5.8939 2.5297 16 14 7.2344 8.3396 2.0374 17 1 5.7533 8.4386 1.9961 18 1 7.7171 8.7093 3.3923 19 1 7.8205 9.2635 1.0333 20 6 8.5621 4.3969 -1.2316 21 6 9.3668 4.3501 0.0687 22 6 2.7704 3.4761 -0.7376 23 6 2.2716 2.0962 -1.1097 24 8 2.1215 1.6945 -2.2441 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.8321 1.5529 1.9385 31 1 1.3644 2.5310 1.6442 32 1 7.1673 3.3240 1.6844 33 1 7.1463 2.5881 0.0638 34 1 8.6770 6.2921 3.3817 35 1 8.3791 3.4524 -1.7442 36 1 8.6997 5.2639 -1.8779 37 1 10.0340 5.1864 0.2781 38 1 9.7131 3.3753 0.4120 39 1 1.9757 4.2132 -0.8526 40 1 3.6339 3.7470 -1.3453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:31 Heat of formation + Delta-G solvation = -96.241034 kcal Electronic energy + Delta-G solvation = -22507.626518 eV Core-core repulsion = 19095.378801 eV Total energy + Delta-G solvation = -3412.247718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91972 -39.37637 -36.97237 -36.27797 -35.27139 -34.06432 -31.96740 -29.97796 -27.81739 -27.02368 -25.35977 -24.08969 -22.94140 -21.18599 -20.10857 -19.42653 -19.28280 -17.54866 -16.90745 -16.74041 -15.80198 -15.74891 -15.36747 -14.94815 -14.59112 -14.16182 -13.86039 -13.70452 -13.55956 -13.19133 -12.95752 -12.45310 -12.39132 -12.18992 -11.97436 -11.73580 -11.71513 -11.48473 -11.21124 -10.96247 -10.91551 -10.56641 -10.35697 -10.07133 -9.87309 -9.80955 -9.55776 -8.96033 -8.84339 -8.48031 -8.17224 -6.07239 -4.12568 2.53789 2.61056 2.88110 3.18039 3.28318 3.33452 3.35872 4.18725 4.26969 4.37468 4.68963 4.85875 4.96465 5.00743 5.18083 5.21573 5.24133 5.35040 5.38879 5.46210 5.54614 5.64420 5.69354 5.81742 5.94203 5.94961 6.16409 6.27650 6.43174 6.44557 6.64177 6.72658 6.98763 7.01365 7.10198 7.31954 7.45664 7.84932 8.11085 8.25755 8.42100 8.87906 9.52788 11.02298 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.004433 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.181975 B = 6315.355413 C = 6690.224441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.617 5.617 4 C 0.113 3.887 5 C -0.099 4.099 6 H 0.137 0.863 7 C 0.460 3.540 8 O -0.520 6.520 9 O -0.318 6.318 10 C 0.117 3.883 11 C 0.035 3.965 12 C -0.482 4.482 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.884 5.884 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.210 4.210 21 C -0.144 4.144 22 C -0.144 4.144 23 C 0.517 3.483 24 O -0.532 6.532 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -6.882 -0.905 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.351 5.351 4 C -0.010 4.010 5 C -0.118 4.118 6 H 0.154 0.846 7 C 0.302 3.698 8 O -0.410 6.410 9 O -0.232 6.232 10 C 0.044 3.956 11 C 0.035 3.965 12 C -0.519 4.519 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.247 4.247 21 C -0.182 4.182 22 C -0.184 4.184 23 C 0.305 3.695 24 O -0.409 6.409 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.946 -7.459 -1.176 14.988 hybrid contribution -0.060 0.831 0.578 1.014 sum -13.007 -6.628 -0.598 14.610 Atomic orbital electron populations 1.22159 0.95809 1.02262 1.02393 1.21330 0.94119 0.81067 1.03381 1.48268 1.65834 1.13859 1.07162 1.22079 0.98636 0.92179 0.88068 1.21929 0.89605 1.01462 0.98819 0.84557 1.23065 0.89364 0.82378 0.74966 1.90605 1.82827 1.25260 1.42321 1.86569 1.18116 1.44816 1.73735 1.22778 0.75529 0.96150 1.01140 1.18771 0.89558 0.94321 0.93885 1.20261 1.33893 0.96219 1.01572 0.91937 1.24984 0.94657 0.97637 0.96097 1.69984 1.38080 1.36704 1.07329 0.86652 0.79077 0.84859 0.77368 1.20104 1.21371 1.20199 1.23125 1.09195 1.00357 0.91998 1.22522 0.96114 1.00337 0.99205 1.22383 1.04763 0.96251 0.95045 1.20931 0.76539 0.87617 0.84429 1.90709 1.53793 1.75324 1.21043 0.92389 0.92272 0.91483 0.90096 0.90155 0.88346 0.89787 0.91157 0.94189 0.92945 0.91583 0.90006 0.89324 0.91739 0.86296 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.12 1.27 6.65 -4.04 -0.03 1.24 16 3 N -0.62 -7.60 2.93 -172.37 -0.51 -8.10 16 4 C 0.11 1.21 6.70 -3.12 -0.02 1.19 16 5 C -0.10 -1.24 3.65 -90.13 -0.33 -1.57 16 6 H 0.14 1.37 8.14 -51.93 -0.42 0.94 16 7 C 0.46 8.28 7.22 36.01 0.26 8.54 16 8 O -0.52 -10.40 15.26 -18.75 -0.29 -10.69 16 9 O -0.32 -6.76 9.50 -39.26 -0.37 -7.14 16 10 C 0.12 2.69 5.53 37.16 0.21 2.90 16 11 C 0.04 0.85 1.81 -155.66 -0.28 0.57 16 12 C -0.48 -12.70 8.24 -34.44 -0.28 -12.98 16 13 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 14 C 0.07 1.83 5.41 -17.82 -0.10 1.73 16 15 N -0.88 -24.34 12.80 55.43 0.71 -23.64 16 16 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.21 -4.50 9.88 -26.73 -0.26 -4.77 16 21 C -0.14 -3.31 9.33 -26.74 -0.25 -3.56 16 22 C -0.14 -1.79 6.41 -26.70 -0.17 -1.96 16 23 C 0.52 7.57 8.02 -10.81 -0.09 7.48 16 24 O -0.53 -9.62 17.59 5.56 0.10 -9.52 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.14 6.98 -51.93 -0.36 0.78 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.74 8.13 -51.93 -0.42 1.32 16 33 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.12 1.63 7.81 -51.92 -0.41 1.23 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -31.87 342.48 -7.39 -39.26 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.21 Total: 1.43 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.96 Total: -2.20 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.20 Total: -31.74 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.56 Total: -27.34 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.87 -7.39 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.977 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds