Wall clock time and date at job start Tue Mar 31 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46894 * 2 1 4 4 C 1.46765 * 124.34436 * 90.00343 * 3 2 1 5 5 C 1.54488 * 105.47266 * 162.96077 * 4 3 2 6 6 H 1.08995 * 110.96998 * 143.56724 * 5 4 3 7 7 C 1.50706 * 110.96850 * 267.29694 * 5 4 3 8 8 O 1.20822 * 120.00067 * 356.91019 * 7 5 4 9 9 O 1.34231 * 119.99642 * 176.90991 * 7 5 4 10 10 C 1.45199 * 116.99565 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.50698 * 115.55099 * 39.88800 * 11 10 9 13 13 H 1.08005 * 120.00043 * 264.97491 * 12 11 10 14 14 C 1.37870 * 119.99900 * 84.97541 * 12 11 10 15 15 N 1.31519 * 120.00425 * 358.48497 * 14 12 11 16 16 Si 1.86806 * 119.99766 * 178.48988 * 14 12 11 17 17 H 1.48496 * 109.47450 * 60.00111 * 16 14 12 18 18 H 1.48509 * 109.46897 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47035 * 299.99579 * 16 14 12 20 20 C 1.52996 * 117.49482 * 254.18420 * 11 10 9 21 21 C 1.52993 * 117.49701 * 185.56280 * 11 10 9 22 22 C 1.54627 * 101.79490 * 25.43303 * 5 4 3 23 23 C 1.34422 * 124.35413 * 269.97479 * 3 2 1 24 24 O 1.21275 * 124.93898 * 0.46619 * 23 3 2 25 25 H 1.08992 * 109.47202 * 299.99435 * 1 2 3 26 26 H 1.08999 * 109.47210 * 59.99811 * 1 2 3 27 27 H 1.08999 * 109.46738 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46975 * 240.00610 * 2 1 3 29 29 H 1.08999 * 109.47210 * 120.00189 * 2 1 3 30 30 H 1.09001 * 110.25097 * 43.96231 * 4 3 2 31 31 H 1.08996 * 110.32133 * 281.99671 * 4 3 2 32 32 H 1.09001 * 109.47128 * 299.99858 * 10 9 7 33 33 H 1.09000 * 109.47125 * 60.00045 * 10 9 7 34 34 H 0.96990 * 120.00134 * 180.02562 * 15 14 12 35 35 H 1.09003 * 117.50407 * 359.97438 * 20 11 10 36 36 H 1.09003 * 117.50095 * 145.01983 * 20 11 10 37 37 H 1.09006 * 117.49771 * 214.97769 * 21 11 10 38 38 H 1.08997 * 117.50271 * 359.96821 * 21 11 10 39 39 H 1.09000 * 110.48642 * 93.86794 * 22 5 4 40 40 H 1.09012 * 110.48484 * 216.50293 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1618 1.2118 5 6 3.1749 3.3438 0.7489 6 1 2.9317 4.2512 1.3016 7 6 4.6386 3.0104 0.8820 8 8 4.9763 1.9527 1.3585 9 8 5.5669 3.8886 0.4712 10 6 6.9571 3.5004 0.6295 11 6 7.8615 4.6200 0.1101 12 6 7.4144 6.0214 0.4376 13 1 6.8293 6.5823 -0.2762 14 6 7.7524 6.5875 1.6485 15 7 8.4395 5.8939 2.5297 16 14 7.2344 8.3396 2.0374 17 1 5.7533 8.4386 1.9961 18 1 7.7171 8.7093 3.3923 19 1 7.8205 9.2635 1.0333 20 6 8.5621 4.3969 -1.2316 21 6 9.3668 4.3501 0.0687 22 6 2.7704 3.4761 -0.7376 23 6 2.2716 2.0962 -1.1097 24 8 2.1215 1.6945 -2.2441 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.8321 1.5529 1.9385 31 1 1.3644 2.5310 1.6442 32 1 7.1673 3.3240 1.6844 33 1 7.1463 2.5881 0.0638 34 1 8.6770 6.2921 3.3817 35 1 8.3791 3.4524 -1.7442 36 1 8.6997 5.2639 -1.8779 37 1 10.0340 5.1864 0.2781 38 1 9.7131 3.3753 0.4120 39 1 1.9757 4.2132 -0.8526 40 1 3.6339 3.7470 -1.3453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744275421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:30 Heat of formation + Delta-G solvation = -114.570286 kcal Electronic energy + Delta-G solvation = -22508.421334 eV Core-core repulsion = 19095.378801 eV Total energy + Delta-G solvation = -3413.042534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10929 -40.75492 -38.64033 -37.54693 -36.87619 -34.98609 -33.97129 -30.89868 -28.92377 -28.60751 -27.31197 -25.16790 -23.92888 -22.97390 -21.42011 -21.17959 -20.43275 -18.84471 -18.44727 -17.95689 -17.43265 -17.16771 -16.60027 -16.43981 -16.21826 -15.53309 -15.06648 -14.92018 -14.53111 -14.44829 -14.33673 -13.95212 -13.61648 -13.53136 -13.14274 -12.98372 -12.89246 -12.77203 -12.71610 -12.55487 -12.35821 -12.12894 -12.00841 -11.64004 -11.60618 -11.28718 -10.93853 -10.86868 -10.44249 -10.01870 -9.80373 -8.07682 -6.18809 1.18790 1.44880 1.47829 1.48782 1.56114 1.76910 2.00277 2.47491 3.19291 3.21797 3.28601 3.37563 3.64402 3.79187 4.08567 4.14996 4.25494 4.31933 4.35320 4.46847 4.47563 4.57024 4.61876 4.63235 4.77734 4.80544 4.82899 4.88663 4.95959 4.96225 5.16028 5.27398 5.37265 5.53094 5.58203 5.73135 5.79766 6.02455 6.38217 6.79614 6.86650 7.04648 7.49487 9.01195 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.004433 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.181975 B = 6315.355413 C = 6690.224441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 N -0.616 5.616 4 C 0.116 3.884 5 C -0.090 4.090 6 H 0.172 0.828 7 C 0.451 3.549 8 O -0.545 6.545 9 O -0.333 6.333 10 C 0.128 3.872 11 C 0.005 3.995 12 C -0.493 4.493 13 H 0.057 0.943 14 C 0.025 3.975 15 N -0.913 5.913 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.186 4.186 21 C -0.147 4.147 22 C -0.137 4.137 23 C 0.505 3.495 24 O -0.578 6.578 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.157 0.843 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 -6.248 -0.411 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.007 4.007 3 N -0.349 5.349 4 C -0.006 4.006 5 C -0.109 4.109 6 H 0.189 0.811 7 C 0.296 3.704 8 O -0.436 6.436 9 O -0.248 6.248 10 C 0.055 3.945 11 C 0.005 3.995 12 C -0.531 4.531 13 H 0.075 0.925 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.777 3.223 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.223 4.223 21 C -0.185 4.185 22 C -0.177 4.177 23 C 0.294 3.706 24 O -0.459 6.459 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.175 0.825 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.940 -6.835 -0.660 16.443 hybrid contribution 0.561 0.552 0.432 0.898 sum -14.379 -6.282 -0.228 15.693 Atomic orbital electron populations 1.22071 0.93888 1.03405 1.02206 1.21521 0.95689 0.80210 1.03257 1.48468 1.64723 1.14464 1.07204 1.22300 1.00132 0.91133 0.87001 1.22150 0.85447 1.03770 0.99556 0.81064 1.24230 0.90983 0.81537 0.73656 1.90589 1.83536 1.26167 1.43310 1.86567 1.17660 1.46100 1.74447 1.22423 0.76873 0.95971 0.99281 1.18922 0.90320 0.94054 0.96242 1.20489 1.33712 0.97255 1.01601 0.92478 1.25675 0.94717 1.01184 0.95953 1.70103 1.39245 1.38189 1.07575 0.85711 0.79196 0.80436 0.76916 1.18956 1.21446 1.19886 1.23128 1.06584 1.01519 0.91050 1.22436 0.95329 1.00106 1.00627 1.22406 1.05139 0.95893 0.94282 1.21350 0.76321 0.88654 0.84264 1.90679 1.56010 1.76379 1.22817 0.90822 0.94030 0.89768 0.92066 0.88471 0.89131 0.85106 0.93997 0.93480 0.93179 0.89378 0.89615 0.91222 0.90715 0.82530 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.11 2.21 6.65 86.38 0.57 2.79 16 3 N -0.62 -14.05 2.93 -817.84 -2.40 -16.44 16 4 C 0.12 2.11 6.70 86.83 0.58 2.69 16 5 C -0.09 -2.02 3.65 -10.48 -0.04 -2.06 16 6 H 0.17 2.70 8.14 -2.39 -0.02 2.68 16 7 C 0.45 15.90 7.22 71.24 0.51 16.41 16 8 O -0.54 -21.71 15.26 21.97 0.34 -21.38 16 9 O -0.33 -14.10 9.50 -51.42 -0.49 -14.59 16 10 C 0.13 5.96 5.53 71.98 0.40 6.36 16 11 C 0.01 0.25 1.81 -52.93 -0.10 0.15 16 12 C -0.49 -25.97 8.24 25.60 0.21 -25.76 16 13 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.02 1.30 5.41 84.65 0.46 1.76 16 15 N -0.91 -50.84 12.80 21.45 0.27 -50.56 16 16 Si 0.95 41.54 29.54 68.60 2.03 43.56 16 17 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.19 -7.81 9.88 30.59 0.30 -7.51 16 21 C -0.15 -6.78 9.33 30.59 0.29 -6.50 16 22 C -0.14 -3.11 6.41 30.62 0.20 -2.92 16 23 C 0.51 14.30 8.02 87.93 0.71 15.01 16 24 O -0.58 -21.13 17.59 -3.02 -0.05 -21.18 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.42 7.93 -2.38 -0.02 1.40 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.87 6.98 -2.39 -0.02 1.85 16 31 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 33 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 34 H 0.26 13.89 8.31 -92.72 -0.77 13.12 16 35 H 0.09 3.30 8.08 -2.39 -0.02 3.28 16 36 H 0.09 3.51 8.14 -2.39 -0.02 3.50 16 37 H 0.07 3.43 8.14 -2.38 -0.02 3.41 16 38 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.10 2.68 7.81 -2.38 -0.02 2.66 16 Total: -1.00 -70.60 342.48 5.55 -65.05 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.02 Total: 16.68 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 4.83 Total: -1.14 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -2.12 Total: -67.01 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -0.21 Total: -57.15 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -70.60 5.55 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.517 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds