Wall clock time and date at job start Tue Mar 31 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46696 * 2 1 4 4 C 1.46500 * 119.99817 * 274.90501 * 3 2 1 5 5 C 1.50700 * 109.47546 * 270.00202 * 4 3 2 6 6 H 1.08003 * 119.99556 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00374 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46806 * 60.00465 * 9 7 5 11 11 H 1.48497 * 109.47023 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47205 * 300.00530 * 9 7 5 13 13 C 1.34775 * 120.00404 * 94.91177 * 3 2 1 14 14 O 1.21578 * 120.00098 * 5.31528 * 13 3 2 15 15 C 1.47684 * 120.00300 * 185.31428 * 13 3 2 16 16 C 1.34816 * 125.44340 * 75.47431 * 15 13 3 17 17 C 1.50698 * 126.64090 * 0.02998 * 16 15 13 18 18 C 1.51086 * 106.72723 * 180.02562 * 16 15 13 19 19 C 1.53004 * 110.10410 * 240.80610 * 18 16 15 20 20 C 1.53008 * 110.10565 * 119.18716 * 18 16 15 21 21 O 1.45455 * 106.22744 * 359.97438 * 18 16 15 22 22 C 1.34479 * 107.97961 * 0.02562 * 21 18 16 23 23 O 1.21499 * 125.02028 * 179.97438 * 22 21 18 24 24 H 1.09003 * 109.46634 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47103 * 300.00248 * 1 2 3 26 26 H 1.08998 * 109.47187 * 60.00255 * 1 2 3 27 27 H 1.08995 * 109.47215 * 239.99363 * 2 1 3 28 28 H 1.09003 * 109.46545 * 119.99452 * 2 1 3 29 29 H 1.08998 * 109.47414 * 30.00727 * 4 3 2 30 30 H 1.09005 * 109.47085 * 150.00542 * 4 3 2 31 31 H 0.97003 * 119.99711 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46670 * 0.03134 * 17 16 15 33 33 H 1.08997 * 109.47162 * 120.02386 * 17 16 15 34 34 H 1.08999 * 109.47263 * 240.03255 * 17 16 15 35 35 H 1.09003 * 109.46740 * 178.24815 * 19 18 16 36 36 H 1.08994 * 109.46879 * 298.24781 * 19 18 16 37 37 H 1.08994 * 109.46752 * 58.25106 * 19 18 16 38 38 H 1.09002 * 109.46347 * 301.74976 * 20 18 16 39 39 H 1.08998 * 109.47060 * 61.74794 * 20 18 16 40 40 H 1.09001 * 109.46938 * 181.75368 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1601 2.1080 -1.2641 5 6 3.5434 1.8854 -1.8191 6 1 4.2464 1.2643 -1.2840 7 6 3.9111 2.4738 -3.0106 8 7 3.0548 3.2296 -3.6625 9 14 5.6255 2.1973 -3.6989 10 1 5.8358 0.7464 -3.9354 11 1 5.7692 2.9340 -4.9802 12 1 6.6344 2.6919 -2.7281 13 6 2.3371 1.9833 1.1629 14 8 2.3123 1.3516 2.2013 15 6 2.7166 3.4105 1.1757 16 6 1.8643 4.4473 1.0491 17 6 0.3700 4.3666 0.8716 18 6 2.6970 5.7060 1.1198 19 6 2.2586 6.5605 2.3109 20 6 2.5578 6.5024 -0.1792 21 8 4.0743 5.2728 1.2960 22 6 4.0857 3.9284 1.3285 23 8 5.0795 3.2426 1.4638 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.4198 1.7449 -1.9770 30 1 2.0054 3.1729 -1.0903 31 1 3.3136 3.6439 -4.5006 32 1 0.0615 3.3212 0.8596 33 1 -0.1223 4.8811 1.6969 34 1 0.0899 4.8390 -0.0699 35 1 2.8860 7.4499 2.3704 36 1 1.2180 6.8579 2.1812 37 1 2.3595 5.9825 3.2294 38 1 2.8703 5.8832 -1.0201 39 1 1.5178 6.7996 -0.3135 40 1 3.1864 7.3915 -0.1294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764516564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:24 Heat of formation + Delta-G solvation = -100.584823 kcal Electronic energy + Delta-G solvation = -23746.835154 eV Core-core repulsion = 20334.399075 eV Total energy + Delta-G solvation = -3412.436078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40891 -38.93781 -37.32538 -35.26936 -34.49563 -32.80128 -32.25238 -30.35513 -28.45850 -27.48502 -27.07107 -24.00671 -23.12460 -22.96893 -21.10456 -19.87811 -18.29551 -16.80132 -16.41524 -16.19240 -15.87751 -15.57147 -15.08841 -14.63507 -14.27363 -13.97219 -13.58611 -13.37208 -13.18436 -13.15938 -12.86610 -12.52478 -12.37945 -12.24619 -12.16075 -12.04896 -11.68782 -11.64740 -11.44379 -11.24049 -10.95600 -10.76112 -10.64623 -10.53150 -10.14988 -9.95087 -9.78773 -9.38648 -9.00680 -8.54078 -7.82299 -6.19414 -4.24967 1.05698 3.00127 3.09087 3.28801 3.30402 3.31167 3.39973 3.79023 4.14033 4.33874 4.39420 4.68172 4.82219 5.14278 5.16412 5.24269 5.43691 5.49588 5.51026 5.57811 5.64730 5.71511 5.72358 5.75072 5.81046 5.88035 5.98015 6.21193 6.23628 6.28907 6.34502 6.56679 6.68903 6.96838 7.08130 7.45401 7.76918 7.91381 8.03824 8.18885 8.73127 8.89202 9.43019 10.87285 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.009012 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.852033 B = 3106.063653 C = 4114.899891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.583 5.583 4 C 0.237 3.763 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.585 3.415 14 O -0.557 6.557 15 C -0.210 4.210 16 C -0.054 4.054 17 C -0.102 4.102 18 C 0.122 3.878 19 C -0.146 4.146 20 C -0.150 4.150 21 O -0.316 6.316 22 C 0.525 3.475 23 O -0.443 6.443 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 6.569 6.176 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.313 5.313 4 C 0.117 3.883 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.372 3.628 14 O -0.437 6.437 15 C -0.214 4.214 16 C -0.056 4.056 17 C -0.158 4.158 18 C 0.084 3.916 19 C -0.203 4.203 20 C -0.207 4.207 21 O -0.233 6.233 22 C 0.366 3.634 23 O -0.327 6.327 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.056 6.164 6.585 12.094 hybrid contribution 1.045 -0.162 -0.733 1.286 sum -7.012 6.003 5.852 10.929 Atomic orbital electron populations 1.22122 0.96572 1.01539 1.01860 1.21325 0.93445 0.83294 1.03114 1.48184 1.61822 1.13595 1.07712 1.19473 0.97563 0.92221 0.78993 1.21483 0.98315 1.31229 1.06456 0.92053 1.24872 0.97554 0.94676 0.96394 1.69899 1.34941 1.31933 1.16397 0.86615 0.84567 0.78631 0.78218 1.19995 1.21059 1.19827 1.17261 0.76842 0.84778 0.83940 1.90709 1.55136 1.65079 1.32815 1.22212 0.95464 0.95862 1.07885 1.23663 0.97240 0.93341 0.91340 1.20597 0.87518 1.04411 1.03294 1.21858 0.77733 0.93245 0.98725 1.22003 1.02389 0.99865 0.96088 1.22021 1.03295 1.00436 0.94904 1.87390 1.29173 1.22600 1.84138 1.20455 0.88613 0.80833 0.73499 1.90877 1.38856 1.58633 1.44287 0.92098 0.93016 0.92328 0.90159 0.90517 0.94342 0.94475 0.92560 0.90360 0.89738 0.88946 0.90475 0.89840 0.91379 0.89830 0.89981 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.11 2.06 6.22 -4.04 -0.03 2.03 16 3 N -0.58 -12.60 2.46 -176.23 -0.43 -13.03 16 4 C 0.24 5.60 5.07 -5.19 -0.03 5.58 16 5 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 7 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.59 13.16 6.67 -12.40 -0.08 13.08 16 14 O -0.56 -13.54 16.59 5.30 0.09 -13.45 16 15 C -0.21 -4.33 4.48 -103.63 -0.46 -4.80 16 16 C -0.05 -0.85 4.14 -100.37 -0.42 -1.27 16 17 C -0.10 -1.22 10.19 36.00 0.37 -0.85 16 18 C 0.12 1.76 1.39 -91.58 -0.13 1.63 16 19 C -0.15 -1.49 8.93 37.16 0.33 -1.16 16 20 C -0.15 -1.91 8.93 37.16 0.33 -1.58 16 21 O -0.32 -6.02 10.58 -39.53 -0.42 -6.44 16 22 C 0.52 11.85 8.56 34.36 0.29 12.15 16 23 O -0.44 -11.56 17.99 -18.93 -0.34 -11.90 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 28 H 0.08 1.45 7.22 -51.93 -0.37 1.07 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.04 0.88 5.89 -51.93 -0.31 0.58 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.08 1.05 7.41 -51.93 -0.38 0.67 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -33.39 343.79 -6.17 -39.55 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.10 Total: -2.65 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 0.14 Total: 9.63 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.30 Total: -36.54 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.67 Total: -31.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.39 -6.17 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764516564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.034 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds