Wall clock time and date at job start Tue Mar 31 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48496 * 109.47100 * 239.99967 * 3 2 1 5 5 H 1.48501 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47040 * 119.99956 * 3 2 1 7 7 C 1.37878 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99565 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47169 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47370 * 180.02562 * 11 10 9 13 13 C 1.34229 * 117.00174 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00013 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99792 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.46989 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47363 * 180.02562 * 16 15 13 18 18 C 1.52991 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47169 * 179.97438 * 18 17 16 20 20 C 1.35349 * 126.91285 * 274.95821 * 19 18 17 21 21 N 1.33777 * 106.49799 * 180.02562 * 20 19 18 22 22 N 1.28634 * 108.88349 * 359.97438 * 21 20 19 23 23 N 1.28715 * 110.18090 * 359.97438 * 22 21 20 24 24 H 0.97000 * 125.86568 * 180.02562 * 23 22 21 25 25 H 0.96998 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47598 * 59.99822 * 9 7 2 27 27 H 1.09003 * 109.47072 * 299.99128 * 9 7 2 28 28 H 1.09000 * 109.46847 * 59.99754 * 10 9 7 29 29 H 1.08995 * 109.47043 * 299.99863 * 10 9 7 30 30 H 1.09003 * 109.46964 * 59.99796 * 11 10 9 31 31 H 1.09006 * 109.46849 * 300.00195 * 11 10 9 32 32 H 1.09006 * 109.46975 * 60.00476 * 15 13 12 33 33 H 1.08998 * 109.47555 * 299.99993 * 15 13 12 34 34 H 1.08998 * 109.47138 * 60.00069 * 16 15 13 35 35 H 1.09007 * 109.46776 * 300.00050 * 16 15 13 36 36 H 1.09003 * 109.46598 * 60.00082 * 17 16 15 37 37 H 1.09002 * 109.46987 * 300.00335 * 17 16 15 38 38 H 1.08998 * 109.47229 * 59.99784 * 18 17 16 39 39 H 1.09002 * 109.47484 * 300.00061 * 18 17 16 40 40 H 1.07997 * 126.75241 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 8 2.4240 -6.0907 0.0018 13 6 1.9110 -7.3311 0.0019 14 8 0.7132 -7.4894 0.0019 15 6 2.8291 -8.5262 0.0019 16 6 1.9958 -9.8094 0.0014 17 6 2.9278 -11.0227 0.0020 18 6 2.0946 -12.3058 0.0021 19 6 3.0126 -13.5010 0.0022 20 6 3.5819 -14.0887 -1.0760 21 7 4.3132 -15.1079 -0.6111 22 7 4.2043 -15.1481 0.6700 23 7 3.4342 -14.2019 1.0801 24 1 3.1964 -14.0224 2.0033 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 0.8535 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.4579 -8.5012 0.8920 33 1 3.4579 -8.5014 -0.8881 34 1 1.3673 -9.8341 -0.8888 35 1 1.3667 -9.8344 0.8912 36 1 3.5560 -10.9978 0.8925 37 1 3.5573 -10.9978 -0.8875 38 1 1.4660 -12.3310 -0.8880 39 1 1.4654 -12.3305 0.8919 40 1 3.4682 -13.7931 -2.1084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782313821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:16 Heat of formation + Delta-G solvation = -33.244838 kcal Electronic energy + Delta-G solvation = -20110.584233 eV Core-core repulsion = 16733.360986 eV Total energy + Delta-G solvation = -3377.223246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.73520 -40.30988 -37.00578 -36.09615 -34.02331 -33.81857 -32.86819 -31.72080 -29.72633 -27.23881 -25.65147 -23.47911 -23.31786 -22.38240 -21.66488 -20.58410 -20.24651 -18.65323 -17.47377 -16.79191 -16.61225 -16.42430 -15.84079 -15.79312 -15.01414 -14.81187 -14.49976 -14.26752 -13.59083 -13.38317 -12.95204 -12.57236 -12.27020 -12.18715 -12.01910 -11.90794 -11.76025 -11.65771 -11.29676 -11.07462 -11.00860 -10.97432 -10.71613 -10.66740 -10.41373 -10.39686 -9.75627 -9.61671 -9.51701 -9.20411 -8.41022 -6.05920 -4.09237 1.09112 2.11735 2.27810 2.29790 2.84729 3.30509 3.34973 3.37460 3.90869 4.14673 4.33299 4.39838 4.41531 4.61920 4.66099 4.86666 4.91558 5.01506 5.05721 5.22203 5.29885 5.30237 5.36135 5.47079 5.53910 5.59344 5.68543 5.74981 5.88867 5.97751 6.35915 6.47929 6.50305 6.81724 6.95235 7.56895 7.67928 7.88814 7.92202 8.00479 8.33108 8.96744 9.55122 11.05394 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.067217 B = 0.001797 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.463431 B =15580.652637 C =15783.730256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.360 6.360 13 C 0.455 3.545 14 O -0.515 6.515 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.050 4.050 19 C -0.005 4.005 20 C -0.048 4.048 21 N -0.266 5.266 22 N -0.085 5.085 23 N -0.390 5.390 24 H 0.447 0.553 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -26.096 1.013 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.276 6.276 13 C 0.298 3.702 14 O -0.404 6.404 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.089 4.089 19 C -0.139 4.139 20 C -0.205 4.205 21 N -0.133 5.133 22 N -0.065 5.065 23 N -0.111 5.111 24 H 0.293 0.707 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.484 -27.233 1.288 27.810 hybrid contribution -0.567 2.070 0.312 2.169 sum 4.917 -25.163 1.600 25.689 Atomic orbital electron populations 1.69954 1.06082 1.26893 1.50398 1.25031 0.94889 0.99366 0.95156 0.86598 0.79528 0.82858 0.78669 1.20170 1.21243 1.20188 1.21136 0.93095 0.90698 1.51211 0.92471 1.19053 0.93842 0.90762 0.97676 1.21767 0.99932 0.91049 1.01948 1.23498 0.91203 0.83680 1.02105 1.86500 1.42759 1.15345 1.83029 1.23643 0.88707 0.85240 0.72650 1.90658 1.17148 1.86958 1.45611 1.21378 0.98085 0.89942 1.05881 1.21425 0.97640 0.91303 1.04331 1.21614 0.98072 0.92419 1.03271 1.20212 0.95306 0.88457 1.04952 1.22388 1.04293 0.99857 0.87375 1.23470 1.00362 0.96063 1.00642 1.75120 1.18877 1.18418 1.00895 1.78316 1.11308 1.09356 1.07538 1.45163 1.33292 1.21549 1.11122 0.70707 0.92825 0.96231 0.96245 0.92177 0.92140 0.91525 0.91570 0.87859 0.87680 0.90437 0.90736 0.91581 0.90697 0.88277 0.90043 0.79178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 11 C 0.07 1.22 5.47 37.16 0.20 1.43 16 12 O -0.36 -5.68 10.22 -39.25 -0.40 -6.08 16 13 C 0.45 6.12 7.96 36.01 0.29 6.41 16 14 O -0.51 -8.39 15.73 -18.75 -0.29 -8.68 16 15 C -0.12 -0.91 5.81 -27.88 -0.16 -1.07 16 16 C -0.11 -0.68 4.50 -26.73 -0.12 -0.80 16 17 C -0.12 -0.45 5.20 -26.74 -0.14 -0.59 16 18 C -0.05 -0.16 5.78 -27.89 -0.16 -0.32 16 19 C -0.01 -0.03 6.56 -82.09 -0.54 -0.57 16 20 C -0.05 -0.34 11.99 -17.73 -0.21 -0.56 16 21 N -0.27 -2.76 12.41 30.23 0.38 -2.38 16 22 N -0.09 -0.80 13.38 60.35 0.81 0.00 16 23 N -0.39 -2.22 6.98 33.54 0.23 -1.98 16 24 H 0.45 0.94 8.96 -190.40 -1.71 -0.77 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 31 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -34.76 348.16 -7.44 -42.21 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -7.58 Total: -7.41 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.54 Total: -11.40 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 2.15 Total: -30.22 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.70 Total: -14.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.76 -7.44 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782313821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.960 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds