Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48496 * 109.47100 * 239.99967 * 3 2 1 5 5 H 1.48501 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47040 * 119.99956 * 3 2 1 7 7 C 1.37878 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99565 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47169 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47370 * 180.02562 * 11 10 9 13 13 C 1.34229 * 117.00174 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00013 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99792 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.46989 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47363 * 180.02562 * 16 15 13 18 18 C 1.52991 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47169 * 179.97438 * 18 17 16 20 20 C 1.35349 * 126.91285 * 274.95821 * 19 18 17 21 21 N 1.33777 * 106.49799 * 180.02562 * 20 19 18 22 22 N 1.28634 * 108.88349 * 359.97438 * 21 20 19 23 23 N 1.28715 * 110.18090 * 359.97438 * 22 21 20 24 24 H 0.97000 * 125.86568 * 180.02562 * 23 22 21 25 25 H 0.96998 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47598 * 59.99822 * 9 7 2 27 27 H 1.09003 * 109.47072 * 299.99128 * 9 7 2 28 28 H 1.09000 * 109.46847 * 59.99754 * 10 9 7 29 29 H 1.08995 * 109.47043 * 299.99863 * 10 9 7 30 30 H 1.09003 * 109.46964 * 59.99796 * 11 10 9 31 31 H 1.09006 * 109.46849 * 300.00195 * 11 10 9 32 32 H 1.09006 * 109.46975 * 60.00476 * 15 13 12 33 33 H 1.08998 * 109.47555 * 299.99993 * 15 13 12 34 34 H 1.08998 * 109.47138 * 60.00069 * 16 15 13 35 35 H 1.09007 * 109.46776 * 300.00050 * 16 15 13 36 36 H 1.09003 * 109.46598 * 60.00082 * 17 16 15 37 37 H 1.09002 * 109.46987 * 300.00335 * 17 16 15 38 38 H 1.08998 * 109.47229 * 59.99784 * 18 17 16 39 39 H 1.09002 * 109.47484 * 300.00061 * 18 17 16 40 40 H 1.07997 * 126.75241 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 8 2.4240 -6.0907 0.0018 13 6 1.9110 -7.3311 0.0019 14 8 0.7132 -7.4894 0.0019 15 6 2.8291 -8.5262 0.0019 16 6 1.9958 -9.8094 0.0014 17 6 2.9278 -11.0227 0.0020 18 6 2.0946 -12.3058 0.0021 19 6 3.0126 -13.5010 0.0022 20 6 3.5819 -14.0887 -1.0760 21 7 4.3132 -15.1079 -0.6111 22 7 4.2043 -15.1481 0.6700 23 7 3.4342 -14.2019 1.0801 24 1 3.1964 -14.0224 2.0033 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 0.8535 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.4579 -8.5012 0.8920 33 1 3.4579 -8.5014 -0.8881 34 1 1.3673 -9.8341 -0.8888 35 1 1.3667 -9.8344 0.8912 36 1 3.5560 -10.9978 0.8925 37 1 3.5573 -10.9978 -0.8875 38 1 1.4660 -12.3310 -0.8880 39 1 1.4654 -12.3305 0.8919 40 1 3.4682 -13.7931 -2.1084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782313821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = -55.291225 kcal Electronic energy + Delta-G solvation = -20111.540236 eV Core-core repulsion = 16733.360986 eV Total energy + Delta-G solvation = -3378.179250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.25084 -41.46364 -38.04615 -36.78167 -35.92390 -34.37386 -33.74302 -33.32449 -30.36398 -28.93748 -26.46416 -25.00646 -23.96831 -23.07564 -22.16444 -22.11043 -21.37121 -19.13282 -18.75383 -18.35923 -17.85495 -17.19039 -16.93578 -16.49953 -16.48963 -15.64197 -15.45182 -15.13816 -14.73850 -14.20546 -14.12289 -13.86415 -13.57818 -13.46506 -13.09347 -12.79667 -12.60082 -12.52343 -12.39903 -12.26583 -12.11738 -12.05224 -11.81521 -11.76503 -11.57658 -11.44334 -11.38447 -11.36697 -11.20207 -10.56803 -10.09766 -8.21740 -6.33508 0.61265 1.23393 1.41779 1.44886 1.52764 1.56331 1.75115 1.93666 2.41652 3.11990 3.49935 3.69038 3.77202 3.93889 3.99870 4.03666 4.07507 4.16563 4.39068 4.42072 4.49994 4.57051 4.61792 4.74940 4.79927 4.85597 4.94555 4.97286 5.08044 5.13591 5.24348 5.36238 5.44668 5.48094 5.59868 5.63513 5.79846 6.02741 6.19018 6.75868 6.82661 7.36068 7.46084 8.90073 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.067217 B = 0.001797 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.463431 B =15580.652637 C =15783.730256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.078 3.922 12 O -0.363 6.363 13 C 0.449 3.551 14 O -0.547 6.547 15 C -0.108 4.108 16 C -0.104 4.104 17 C -0.106 4.106 18 C -0.045 4.045 19 C 0.012 3.988 20 C -0.062 4.062 21 N -0.307 5.307 22 N -0.120 5.120 23 N -0.377 5.377 24 H 0.462 0.538 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -26.189 1.116 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.132 4.132 11 C 0.004 3.996 12 O -0.279 6.279 13 C 0.295 3.705 14 O -0.437 6.437 15 C -0.145 4.145 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.220 4.220 21 N -0.173 5.173 22 N -0.099 5.099 23 N -0.100 5.100 24 H 0.310 0.690 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.819 -27.362 1.415 28.234 hybrid contribution -1.041 2.070 0.283 2.334 sum 5.777 -25.292 1.699 25.999 Atomic orbital electron populations 1.70092 1.07860 1.27983 1.51336 1.26011 0.95796 1.03510 0.94565 0.85442 0.78196 0.77782 0.79275 1.19051 1.20944 1.19071 1.21607 0.93769 0.91911 1.51045 0.91651 1.18945 0.94309 0.92563 0.95430 1.21454 0.98698 0.90556 1.02502 1.23067 0.90975 0.83926 1.01605 1.86497 1.42053 1.15899 1.83480 1.24858 0.89270 0.85322 0.71069 1.90650 1.18924 1.87071 1.47105 1.21607 0.97472 0.87446 1.07939 1.21390 0.97731 0.91409 1.03689 1.21518 0.97633 0.91335 1.03976 1.20276 0.94909 0.87006 1.06265 1.22655 1.03377 0.99688 0.86642 1.23969 1.00178 0.95629 1.02233 1.75068 1.20519 1.20189 1.01537 1.78247 1.13104 1.11052 1.07536 1.45205 1.32126 1.20589 1.12108 0.68985 0.92691 0.98517 0.98524 0.91526 0.91498 0.92106 0.92137 0.85602 0.85448 0.91204 0.91439 0.90858 0.90087 0.87234 0.88620 0.77151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.84 5.53 30.60 0.17 -3.67 16 11 C 0.08 2.80 5.47 71.98 0.39 3.19 16 12 O -0.36 -10.97 10.22 -51.41 -0.53 -11.50 16 13 C 0.45 11.41 7.96 71.24 0.57 11.98 16 14 O -0.55 -17.49 15.73 21.96 0.35 -17.15 16 15 C -0.11 -1.37 5.81 29.85 0.17 -1.19 16 16 C -0.10 -1.01 4.50 30.60 0.14 -0.88 16 17 C -0.11 -0.47 5.20 30.59 0.16 -0.31 16 18 C -0.05 -0.15 5.78 29.84 0.17 0.02 16 19 C 0.01 0.10 6.56 41.35 0.27 0.37 16 20 C -0.06 -0.80 11.99 83.73 1.00 0.20 16 21 N -0.31 -6.28 12.41 -58.26 -0.72 -7.01 16 22 N -0.12 -2.22 13.38 37.02 0.50 -1.73 16 23 N -0.38 -3.73 6.98 -47.79 -0.33 -4.06 16 24 H 0.46 1.12 8.96 -219.96 -1.97 -0.85 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.06 2.23 8.13 -2.39 -0.02 2.22 16 31 H 0.06 2.22 8.13 -2.38 -0.02 2.20 16 32 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.81 8.10 -2.39 -0.02 0.79 16 35 H 0.07 0.77 8.10 -2.38 -0.02 0.75 16 36 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -76.41 348.16 4.52 -71.89 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -0.94 Total: -1.18 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.89 Total: -18.79 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -0.28 Total: -68.81 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.18 Total: -28.65 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.41 4.52 -71.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782313821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.596 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds