Wall clock time and date at job start Tue Mar 31 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47245 * 2 1 4 4 N 1.46898 * 109.47494 * 240.00069 * 2 1 3 5 5 C 1.46894 * 111.00044 * 87.45522 * 4 2 1 6 6 C 1.53005 * 109.46905 * 183.73313 * 5 4 2 7 7 C 1.50697 * 115.55206 * 274.74665 * 6 5 4 8 8 H 1.08004 * 119.99768 * 121.75207 * 7 6 5 9 9 C 1.37878 * 120.00023 * 301.75653 * 7 6 5 10 10 N 1.31507 * 119.99969 * 354.32231 * 9 7 6 11 11 Si 1.86806 * 119.99679 * 174.32099 * 9 7 6 12 12 H 1.48497 * 109.47179 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46712 * 119.99805 * 11 9 7 14 14 H 1.48497 * 109.47077 * 239.99603 * 11 9 7 15 15 C 1.53003 * 117.49672 * 129.04122 * 6 5 4 16 16 C 1.52996 * 117.49659 * 60.42215 * 6 5 4 17 17 C 1.50699 * 109.46781 * 119.99731 * 2 1 3 18 18 C 1.38418 * 120.02445 * 73.46727 * 17 2 1 19 19 F 1.35100 * 120.01385 * 359.97438 * 18 17 2 20 20 C 1.38476 * 119.97293 * 179.74731 * 18 17 2 21 21 C 1.38213 * 120.02604 * 0.52278 * 20 18 17 22 22 C 1.38205 * 120.04664 * 359.75219 * 21 20 18 23 23 C 1.38425 * 120.02674 * 253.73863 * 17 2 1 24 24 F 1.35099 * 120.01108 * 0.02562 * 23 17 2 25 25 H 1.08999 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47449 * 300.00610 * 1 2 3 27 27 H 1.09008 * 109.46858 * 60.00125 * 1 2 3 28 28 H 1.00901 * 110.99253 * 323.50282 * 4 2 1 29 29 H 1.09002 * 109.47580 * 303.73323 * 5 4 2 30 30 H 1.09005 * 109.47268 * 63.73823 * 5 4 2 31 31 H 0.97007 * 119.99974 * 185.01562 * 10 9 7 32 32 H 1.09000 * 117.50102 * 0.02562 * 15 6 5 33 33 H 1.09004 * 117.49791 * 145.02155 * 15 6 5 34 34 H 1.09001 * 117.49868 * 214.97498 * 16 6 5 35 35 H 1.08996 * 117.50600 * 359.97336 * 16 6 5 36 36 H 1.08001 * 119.98776 * 180.27548 * 20 18 17 37 37 H 1.07998 * 119.97288 * 179.72359 * 21 20 18 38 38 H 1.08004 * 119.98630 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.1378 0.2357 -2.3318 6 6 2.5600 -0.5373 -3.5829 7 6 4.0429 -0.7500 -3.7460 8 1 4.4397 -1.7517 -3.8211 9 6 4.8931 0.3341 -3.7992 10 7 4.4025 1.5541 -3.8202 11 14 6.7419 0.0700 -3.8415 12 1 7.0349 -1.3855 -3.8092 13 1 7.2977 0.6587 -5.0864 14 1 7.3628 0.7267 -2.6632 15 6 1.7313 -0.3329 -4.8527 16 6 1.6287 -1.6468 -4.0755 17 6 2.0322 -0.7104 1.2305 18 6 1.9415 -2.0887 1.3201 19 9 1.4021 -2.7978 0.3045 20 6 2.4081 -2.7408 2.4491 21 6 2.9544 -2.0150 3.4908 22 6 3.0402 -0.6383 3.4048 23 6 2.5795 0.0155 2.2745 24 9 2.6631 1.3613 2.1909 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.4263 -1.4743 -1.4330 29 1 1.1759 0.7167 -2.5093 30 1 2.8867 0.9941 -2.1034 31 1 4.9957 2.3136 -3.9310 32 1 0.8857 0.3526 -4.7970 33 1 2.2588 -0.3522 -5.8065 34 1 2.0887 -2.5304 -4.5179 35 1 0.7156 -1.8264 -3.5082 36 1 2.3415 -3.8166 2.5173 37 1 3.3139 -2.5241 4.3727 38 1 3.4669 -0.0722 4.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797423813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:08 Heat of formation + Delta-G solvation = -40.754867 kcal Electronic energy + Delta-G solvation = -22391.425896 eV Core-core repulsion = 18870.496724 eV Total energy + Delta-G solvation = -3520.929172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.86715 -48.75875 -38.92393 -37.26887 -35.33823 -31.95791 -31.06139 -30.21280 -28.70585 -25.68824 -24.56354 -23.34604 -22.62298 -21.22996 -20.49601 -18.97687 -18.00404 -17.10911 -16.40923 -15.84928 -15.70189 -15.43660 -15.07606 -14.64229 -14.49478 -14.27408 -14.10668 -13.89379 -13.34982 -12.90031 -12.67018 -12.42583 -12.13654 -11.97629 -11.85714 -11.62610 -11.26755 -11.09447 -10.91488 -10.67728 -10.54659 -10.40034 -10.18850 -9.34837 -8.88092 -8.73932 -8.66136 -8.53792 -8.04561 -7.52687 -5.95672 -3.97344 1.04530 1.08846 3.34058 3.41919 3.42345 3.46937 4.03443 4.47471 4.50089 4.52125 4.69892 4.85694 5.04404 5.16628 5.26163 5.40510 5.48057 5.55782 5.72606 5.85801 5.89518 6.03217 6.08504 6.12498 6.16285 6.17512 6.31694 6.42573 6.59303 6.69588 6.74740 6.84622 6.96883 7.10385 7.40992 7.71199 7.94330 8.02130 8.22593 8.55153 8.99954 9.64348 11.12610 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.005973 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.808779 B = 4686.868640 C = 5253.897985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 H 0.092 0.908 4 N -0.669 5.669 5 C 0.106 3.894 6 C 0.060 3.940 7 C -0.474 4.474 8 H 0.059 0.941 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.284 1.284 15 C -0.185 4.185 16 C -0.210 4.210 17 C -0.126 4.126 18 C 0.151 3.849 19 F -0.123 7.123 20 C -0.170 4.170 21 C -0.072 4.072 22 C -0.169 4.169 23 C 0.130 3.870 24 F -0.131 7.131 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.336 0.664 29 H -0.002 1.002 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -4.703 14.260 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.008 3.992 3 H 0.110 0.890 4 N -0.301 5.301 5 C -0.022 4.022 6 C 0.059 3.941 7 C -0.511 4.511 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.524 5.524 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.210 1.210 15 C -0.224 4.224 16 C -0.247 4.247 17 C -0.129 4.129 18 C 0.131 3.869 19 F -0.101 7.101 20 C -0.188 4.188 21 C -0.091 4.091 22 C -0.188 4.188 23 C 0.110 3.890 24 F -0.109 7.109 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.156 0.844 29 H 0.016 0.984 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.618 -4.418 14.424 16.097 hybrid contribution 0.004 0.219 -0.568 0.609 sum -5.614 -4.199 13.855 15.528 Atomic orbital electron populations 1.22472 0.96477 1.02225 1.02281 1.20317 0.92416 0.97985 0.88519 0.88983 1.60540 1.54478 1.11107 1.03928 1.21611 0.97334 0.94356 0.88914 1.18859 0.92199 0.93623 0.89373 1.20480 0.89006 0.92590 1.49064 0.92321 1.24924 0.98427 0.95142 0.94832 1.69932 1.34762 0.97903 1.49782 0.86565 0.85897 0.78326 0.77390 1.19762 1.21254 1.20999 1.22843 1.02702 0.97873 0.98935 1.22802 1.01756 0.93345 1.06805 1.20052 1.02795 0.92963 0.97055 1.17119 0.96278 0.88246 0.85280 1.91489 1.82919 1.77776 1.57944 1.21171 1.02927 1.01201 0.93550 1.20726 0.97322 0.92752 0.98257 1.21105 1.04232 0.95458 0.97979 1.17210 0.99771 0.77283 0.94738 1.91510 1.94026 1.28994 1.96369 0.92314 0.92438 0.91759 0.84396 0.98436 0.88508 0.93146 0.92072 0.90330 0.90544 0.91975 0.84370 0.84380 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 9.07 37.16 0.34 -2.25 16 2 C 0.12 2.07 2.60 -68.87 -0.18 1.89 16 3 H 0.09 1.73 6.92 -51.93 -0.36 1.37 16 4 N -0.67 -13.74 5.70 -107.96 -0.61 -14.36 16 5 C 0.11 2.48 5.28 -3.82 -0.02 2.46 16 6 C 0.06 1.51 1.65 -155.66 -0.26 1.25 16 7 C -0.47 -13.21 8.88 -34.44 -0.31 -13.52 16 8 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 9 C 0.07 1.91 5.22 -17.82 -0.09 1.82 16 10 N -0.89 -25.33 11.91 55.43 0.66 -24.67 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 15 C -0.19 -4.35 9.88 -26.73 -0.26 -4.62 16 16 C -0.21 -4.62 9.39 -26.73 -0.25 -4.87 16 17 C -0.13 -2.01 4.96 -104.49 -0.52 -2.53 16 18 C 0.15 2.24 6.95 -39.43 -0.27 1.96 16 19 F -0.12 -1.96 14.30 2.25 0.03 -1.93 16 20 C -0.17 -1.98 10.03 -39.50 -0.40 -2.38 16 21 C -0.07 -0.73 10.04 -39.60 -0.40 -1.13 16 22 C -0.17 -1.94 10.02 -39.51 -0.40 -2.34 16 23 C 0.13 1.90 7.25 -39.43 -0.29 1.62 16 24 F -0.13 -2.04 16.26 2.25 0.04 -2.00 16 25 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.96 7.57 -51.92 -0.39 0.57 16 28 H 0.34 6.64 5.83 -39.29 -0.23 6.41 16 29 H 0.00 -0.06 7.30 -51.93 -0.38 -0.43 16 30 H 0.10 2.59 6.55 -51.93 -0.34 2.25 16 31 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 32 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 33 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.06 1.24 7.71 -51.93 -0.40 0.84 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -29.32 322.36 -8.34 -37.66 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.99 Total: 6.32 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.30 Total: -22.62 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.05 Total: -39.03 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.32 -8.34 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797423813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.092 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds