Wall clock time and date at job start Tue Mar 31 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31130 * 126.54593 * 2 1 4 4 C 1.34502 * 105.61252 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.29101 * 179.97438 * 4 3 2 6 6 N 1.46900 * 110.05438 * 58.58480 * 5 4 3 7 7 C 1.46909 * 111.00114 * 301.41672 * 6 5 4 8 8 C 1.52993 * 109.47213 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47211 * 60.00480 * 8 7 6 10 10 O 1.42894 * 109.47326 * 300.00523 * 8 7 6 11 11 C 1.50696 * 109.47126 * 179.97438 * 8 7 6 12 12 H 1.08005 * 120.00370 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99956 * 180.02562 * 11 8 7 14 14 N 1.31525 * 120.00156 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00179 * 0.02562 * 13 11 8 16 16 H 1.48505 * 109.46987 * 89.99927 * 15 13 11 17 17 H 1.48498 * 109.47236 * 209.99721 * 15 13 11 18 18 H 1.48495 * 109.47220 * 330.00142 * 15 13 11 19 19 C 1.53869 * 110.03443 * 180.02562 * 5 4 3 20 20 C 1.54270 * 106.63967 * 119.26017 * 19 5 4 21 21 C 1.54961 * 104.16191 * 336.44607 * 20 19 5 22 22 C 1.54268 * 110.03002 * 297.17164 * 5 4 3 23 23 N 1.29949 * 107.42288 * 0.24198 * 4 3 2 24 24 O 1.21307 * 110.25082 * 359.58231 * 23 4 3 25 25 H 1.09006 * 109.46699 * 90.00342 * 1 2 3 26 26 H 1.09001 * 109.47192 * 209.99898 * 1 2 3 27 27 H 1.09005 * 109.47365 * 330.00415 * 1 2 3 28 28 H 1.00897 * 111.00122 * 65.37079 * 6 5 4 29 29 H 1.08998 * 109.46974 * 300.00294 * 7 6 5 30 30 H 1.09007 * 109.46640 * 59.99900 * 7 6 5 31 31 H 0.96704 * 113.99632 * 299.99400 * 10 8 7 32 32 H 0.96994 * 120.00076 * 180.02562 * 14 13 11 33 33 H 1.09002 * 110.03268 * 238.57104 * 19 5 4 34 34 H 1.08995 * 110.03391 * 359.95409 * 19 5 4 35 35 H 1.08997 * 110.48585 * 95.09409 * 20 19 5 36 36 H 1.09002 * 110.48442 * 217.73292 * 20 19 5 37 37 H 1.09001 * 110.71970 * 279.57802 * 21 20 19 38 38 H 1.08991 * 110.92569 * 156.29385 * 21 20 19 39 39 H 1.08997 * 110.48788 * 22.99947 * 22 5 4 40 40 H 1.09000 * 110.48806 * 145.51247 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8112 1.3887 -0.0014 6 7 4.8459 2.2664 1.1761 7 6 3.6836 3.1646 1.1978 8 6 3.7545 4.0605 2.4360 9 1 4.6698 4.6516 2.4049 10 8 3.7513 3.2489 3.6121 11 6 2.5625 4.9823 2.4579 12 1 1.8276 4.9337 1.6679 13 6 2.4101 5.8877 3.4864 14 7 1.3695 6.6919 3.5058 15 14 3.6814 5.9723 4.8524 16 1 4.7401 6.9463 4.4837 17 1 3.0262 6.4068 6.1123 18 1 4.2887 4.6313 5.0472 19 6 6.0369 0.4587 -0.0025 20 6 6.8246 0.7675 -1.2925 21 6 5.7663 1.3775 -2.2461 22 6 4.8965 2.2311 -1.2910 23 7 3.4645 -0.7241 -0.0061 24 8 2.3029 -1.0736 -0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 4.9023 1.7275 2.0273 29 1 3.6859 3.7833 0.3005 30 1 2.7683 2.5735 1.2293 31 1 2.9642 2.6949 3.7054 32 1 1.2625 7.3292 4.2292 33 1 6.6578 0.6582 0.8709 34 1 5.7154 -0.5828 -0.0017 35 1 7.6176 1.4879 -1.0921 36 1 7.2378 -0.1482 -1.7156 37 1 5.1708 0.5932 -2.7135 38 1 6.2388 2.0042 -3.0022 39 1 3.9034 2.3834 -1.7135 40 1 5.3755 3.1893 -1.0898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809576380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:14 Heat of formation + Delta-G solvation = 21.159731 kcal Electronic energy + Delta-G solvation = -23180.440560 eV Core-core repulsion = 19805.576473 eV Total energy + Delta-G solvation = -3374.864087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.49134 -39.19353 -36.38026 -35.53109 -33.60761 -33.01582 -32.20521 -29.50725 -28.71656 -28.50488 -26.80593 -24.00243 -23.74021 -22.51193 -20.89183 -20.09684 -19.24627 -18.09663 -17.46006 -17.09222 -15.86377 -15.56916 -15.13999 -14.78846 -14.58055 -14.17562 -13.92219 -13.53232 -13.40743 -13.30634 -13.12198 -12.67384 -12.21505 -12.14215 -11.70773 -11.37771 -11.24633 -11.16914 -11.11280 -11.06231 -10.89999 -10.78715 -10.66024 -10.52912 -10.25482 -9.90545 -9.78558 -8.98927 -8.59156 -8.27467 -8.07241 -6.08688 -4.18860 1.22312 2.34369 2.88810 3.42756 3.51475 3.65202 3.78543 4.07058 4.50490 4.57880 4.58257 4.68299 5.02057 5.07286 5.15097 5.20214 5.25327 5.48094 5.52043 5.56412 5.66401 5.72701 5.81869 5.88790 5.89975 5.92344 6.02242 6.06557 6.14138 6.24468 6.32519 6.36723 6.46788 6.90010 7.25379 7.51448 7.63339 7.83542 8.28683 8.33592 8.87252 9.04483 9.56614 11.01970 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.005878 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.776362 B = 4762.657712 C = 5726.982705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.461 5.461 4 C 0.154 3.846 5 C 0.201 3.799 6 N -0.658 5.658 7 C 0.031 3.969 8 C 0.195 3.805 9 H 0.060 0.940 10 O -0.583 6.583 11 C -0.558 4.558 12 H 0.072 0.928 13 C 0.082 3.918 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.287 1.287 17 H -0.297 1.297 18 H -0.218 1.218 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.105 4.105 23 N -0.385 5.385 24 O 0.066 5.934 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.343 0.657 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.350 0.650 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -15.491 -9.770 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.053 4.053 3 N -0.195 5.195 4 C -0.121 4.121 5 C 0.106 3.894 6 N -0.289 5.289 7 C -0.097 4.097 8 C 0.138 3.862 9 H 0.078 0.922 10 O -0.388 6.388 11 C -0.596 4.596 12 H 0.090 0.910 13 C -0.122 4.122 14 N -0.532 5.532 15 Si 0.699 3.301 16 H -0.214 1.214 17 H -0.224 1.224 18 H -0.141 1.141 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.143 4.143 23 N -0.095 5.095 24 O 0.009 5.991 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.196 0.804 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.708 -14.684 -9.868 18.308 hybrid contribution -1.111 -0.592 0.862 1.526 sum 3.596 -15.277 -9.007 18.095 Atomic orbital electron populations 1.20385 0.80450 1.05983 1.05157 1.29023 0.99034 0.80864 0.96392 1.72129 1.00200 1.28019 1.19200 1.27247 0.96500 0.88457 0.99891 1.20203 0.85263 0.89536 0.94363 1.61075 1.44086 1.20206 1.03511 1.22944 0.90399 0.95162 1.01202 1.19851 0.97705 0.88241 0.80438 0.92225 1.86693 1.45735 1.59756 1.46600 1.21478 1.08515 1.18828 1.10763 0.90970 1.24994 0.95262 0.93928 0.97968 1.69966 1.28861 1.21477 1.32903 0.87011 0.81844 0.80620 0.80638 1.21417 1.22441 1.14070 1.22274 0.95076 0.98764 0.99441 1.22284 0.97791 1.00533 0.94792 1.22491 0.97236 0.98924 0.97561 1.22430 1.00585 0.99019 0.92307 1.74563 0.97198 1.16006 1.21722 1.85245 1.11716 1.35987 1.66139 0.88306 0.88753 0.87381 0.83802 0.91017 0.92392 0.80408 0.92695 0.90027 0.90663 0.90995 0.91761 0.92211 0.91098 0.91352 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.17 2.17 8.51 -13.06 -0.11 2.06 16 3 N -0.46 -7.51 8.83 -9.86 -0.09 -7.60 16 4 C 0.15 2.48 6.26 -156.36 -0.98 1.50 16 5 C 0.20 3.08 0.83 -131.64 -0.11 2.97 16 6 N -0.66 -11.59 5.94 -100.00 -0.59 -12.18 16 7 C 0.03 0.64 4.62 -3.82 -0.02 0.62 16 8 C 0.20 4.65 2.58 -27.89 -0.07 4.58 16 9 H 0.06 1.50 7.57 -51.93 -0.39 1.11 16 10 O -0.58 -13.33 9.48 -35.23 -0.33 -13.66 16 11 C -0.56 -15.68 9.34 -34.44 -0.32 -16.00 16 12 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 13 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 14 N -0.89 -27.51 13.96 55.43 0.77 -26.73 16 15 Si 0.87 22.25 26.99 -169.99 -4.59 17.66 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 18 H -0.22 -5.46 5.31 56.52 0.30 -5.16 16 19 C -0.12 -1.56 6.18 -25.61 -0.16 -1.71 16 20 C -0.12 -1.31 6.84 -25.03 -0.17 -1.48 16 21 C -0.12 -1.45 6.91 -24.73 -0.17 -1.62 16 22 C -0.10 -1.51 4.81 -25.10 -0.12 -1.63 16 23 N -0.39 -5.96 10.68 30.90 0.33 -5.63 16 24 O 0.07 0.91 11.31 18.11 0.20 1.12 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.34 6.13 8.12 -39.29 -0.32 5.81 16 29 H 0.07 1.52 7.09 -51.93 -0.37 1.15 16 30 H 0.06 1.22 5.33 -51.93 -0.28 0.94 16 31 H 0.35 7.29 9.04 45.56 0.41 7.70 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 34 H 0.07 1.03 6.60 -51.93 -0.34 0.69 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 40 H 0.09 1.38 7.88 -51.93 -0.41 0.98 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -32.82 320.17 -6.55 -39.37 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.13 Total: 11.35 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.95 Total: -8.52 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.42 Total: -52.14 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.13 Total: -12.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.59 Total: 17.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.82 -6.55 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.530 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds