Wall clock time and date at job start Tue Mar 31 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35998 * 116.99801 * 2 1 4 4 C 1.38560 * 120.07653 * 0.02676 * 3 2 1 5 5 C 1.38244 * 120.00166 * 179.69914 * 4 3 2 6 6 C 1.38253 * 120.14363 * 0.55305 * 5 4 3 7 7 C 1.50699 * 119.92697 * 179.72234 * 6 5 4 8 8 N 1.46900 * 109.47212 * 269.72518 * 7 6 5 9 9 C 1.46900 * 110.99829 * 66.04128 * 8 7 6 10 10 C 1.46891 * 111.00120 * 189.99937 * 8 7 6 11 11 C 1.53007 * 109.47311 * 170.00099 * 10 8 7 12 12 H 1.08995 * 109.46729 * 60.00100 * 11 10 8 13 13 O 1.42901 * 109.46576 * 299.99933 * 11 10 8 14 14 C 1.50697 * 109.46894 * 180.02562 * 11 10 8 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.38244 * 120.14502 * 359.44380 * 6 5 4 23 23 C 1.38564 * 120.00181 * 0.27907 * 22 6 5 24 24 O 1.35990 * 120.07487 * 179.97438 * 23 22 6 25 25 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46657 * 299.99274 * 1 2 3 27 27 H 1.09000 * 109.47112 * 59.99642 * 1 2 3 28 28 H 1.08002 * 119.99767 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.92941 * 180.29614 * 5 4 3 30 30 H 1.09003 * 109.47269 * 149.72504 * 7 6 5 31 31 H 1.09000 * 109.46780 * 29.72457 * 7 6 5 32 32 H 1.08998 * 109.46796 * 183.95056 * 9 8 7 33 33 H 1.08997 * 109.47613 * 303.96180 * 9 8 7 34 34 H 1.09007 * 109.46887 * 63.95835 * 9 8 7 35 35 H 1.09000 * 109.47319 * 50.00031 * 10 8 7 36 36 H 1.08999 * 109.47480 * 289.99808 * 10 8 7 37 37 H 0.96703 * 114.00389 * 299.99541 * 13 11 10 38 38 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.00103 * 180.25061 * 22 6 5 40 40 H 0.96708 * 113.99683 * 90.00150 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3748 0.0006 5 6 1.9224 3.6058 0.0068 6 6 3.3030 3.6799 0.0010 7 6 3.9837 5.0243 0.0016 8 7 4.2048 5.4619 -1.3832 9 6 2.9288 5.7164 -2.0649 10 6 5.0717 6.6468 -1.4289 11 6 5.4815 6.9236 -2.8768 12 1 4.5905 7.1018 -3.4787 13 8 6.1890 5.7955 -3.3954 14 6 6.3713 8.1389 -2.9235 15 1 6.6201 8.6614 -2.0116 16 6 6.8687 8.5831 -4.1303 17 7 7.6449 9.6440 -4.1712 18 14 6.4390 7.6789 -5.7074 19 1 7.4498 6.6215 -5.9628 20 1 5.0967 7.0582 -5.5721 21 1 6.4289 8.6382 -6.8409 22 6 4.0603 2.5233 0.0005 23 6 3.4360 1.2863 0.0000 24 8 4.1795 0.1477 -0.0010 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2147 2.3196 0.0014 29 1 1.3343 4.5115 0.0121 30 1 4.9419 4.9463 0.5154 31 1 3.3538 5.7503 0.5158 32 1 3.1184 5.9708 -3.1077 33 1 2.3062 4.8231 -2.0162 34 1 2.4148 6.5445 -1.5766 35 1 5.9627 6.4686 -0.8268 36 1 4.5321 7.5073 -1.0333 37 1 6.9951 5.5783 -2.9073 38 1 7.9944 9.9567 -5.0202 39 1 5.1387 2.5840 0.0001 40 1 4.3949 -0.1822 0.8822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:11 Heat of formation + Delta-G solvation = -93.465574 kcal Electronic energy + Delta-G solvation = -22003.549529 eV Core-core repulsion = 18591.422165 eV Total energy + Delta-G solvation = -3412.127365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55788 -38.38717 -37.60976 -36.53656 -34.89027 -32.22721 -31.08003 -30.13305 -28.68851 -27.72259 -26.76791 -25.26163 -22.72141 -22.61488 -20.93513 -20.05143 -18.56940 -17.67640 -17.31933 -16.66998 -16.05729 -15.34748 -15.18332 -14.94378 -14.72458 -14.53986 -14.41828 -14.10887 -13.73043 -13.55699 -13.11654 -12.63065 -12.48452 -12.28081 -12.16844 -11.62963 -11.56386 -11.29495 -11.19948 -11.10317 -10.84794 -10.80313 -10.67793 -10.48840 -9.74647 -9.13801 -8.91401 -8.64121 -8.41497 -8.18431 -7.76096 -6.12577 -4.24409 1.12627 1.24714 3.03583 3.47329 3.47639 3.51393 3.65064 4.06316 4.49913 4.52310 4.63057 4.75234 4.86007 4.88612 5.05730 5.18604 5.19992 5.25479 5.33893 5.51017 5.63062 5.73182 5.78532 5.85508 5.95796 6.04417 6.08606 6.13852 6.28010 6.38082 6.52282 6.60063 6.61091 7.04238 7.28036 7.38492 7.56342 7.64791 7.70037 8.29508 8.83607 9.12127 9.51684 10.97802 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.003524 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.471847 B = 7942.770545 C = 8030.910876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.096 3.904 4 C -0.196 4.196 5 C -0.082 4.082 6 C -0.087 4.087 7 C 0.093 3.907 8 N -0.528 5.528 9 C 0.022 3.978 10 C 0.040 3.960 11 C 0.199 3.801 12 H 0.058 0.942 13 O -0.575 6.575 14 C -0.564 4.564 15 H 0.072 0.928 16 C 0.082 3.918 17 N -0.894 5.894 18 Si 0.916 3.084 19 H -0.278 1.278 20 H -0.268 1.268 21 H -0.307 1.307 22 C -0.083 4.083 23 C 0.072 3.928 24 O -0.486 6.486 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.359 0.641 38 H 0.265 0.735 39 H 0.138 0.862 40 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 -16.418 12.118 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.050 3.950 4 C -0.215 4.215 5 C -0.101 4.101 6 C -0.087 4.087 7 C -0.034 4.034 8 N -0.251 5.251 9 C -0.126 4.126 10 C -0.087 4.087 11 C 0.141 3.859 12 H 0.076 0.924 13 O -0.380 6.380 14 C -0.601 4.601 15 H 0.090 0.910 16 C -0.123 4.123 17 N -0.532 5.532 18 Si 0.746 3.254 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.235 1.235 22 C -0.101 4.101 23 C 0.027 3.973 24 O -0.294 6.294 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.205 0.795 38 H 0.075 0.925 39 H 0.156 0.844 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.035 -16.801 10.728 24.379 hybrid contribution -0.392 0.499 0.515 0.817 sum -14.427 -16.303 11.242 24.501 Atomic orbital electron populations 1.23056 0.78741 1.03816 1.01286 1.86135 1.21005 1.26450 1.88835 1.19438 0.91760 0.84746 0.99081 1.21073 0.99846 0.91861 1.08743 1.20895 0.94113 0.96971 0.98135 1.19636 0.92987 0.95085 1.01032 1.21026 0.99557 0.91736 0.91106 1.62027 1.14433 1.35703 1.12961 1.22453 0.90719 0.99215 1.00228 1.22873 0.95589 0.88865 1.01391 1.19872 0.92869 0.84610 0.88547 0.92431 1.86372 1.40904 1.51541 1.59191 1.21549 1.31331 1.11741 0.95516 0.90959 1.25015 0.93446 0.93962 0.99855 1.69962 1.32749 1.23674 1.26766 0.86204 0.80187 0.78163 0.80834 1.20343 1.19342 1.23520 1.21162 1.00825 0.90020 0.98142 1.17731 0.86036 0.86597 1.06936 1.84926 1.71837 1.39703 1.32965 0.88333 0.92798 0.92638 0.85277 0.85738 0.90071 0.94414 0.90818 0.91948 0.96275 0.91197 0.94874 0.79483 0.92535 0.84390 0.76266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.58 10.28 -34.24 -0.35 -3.94 16 3 C 0.10 1.18 6.70 -39.12 -0.26 0.91 16 4 C -0.20 -2.14 9.04 -39.46 -0.36 -2.50 16 5 C -0.08 -0.95 7.90 -39.57 -0.31 -1.26 16 6 C -0.09 -1.12 4.88 -104.61 -0.51 -1.63 16 7 C 0.09 1.28 5.12 -4.98 -0.03 1.26 16 8 N -0.53 -8.99 4.62 -244.37 -1.13 -10.12 16 9 C 0.02 0.36 8.98 60.06 0.54 0.90 16 10 C 0.04 0.78 4.56 -3.83 -0.02 0.76 16 11 C 0.20 4.68 2.17 -27.88 -0.06 4.62 16 12 H 0.06 1.43 5.61 -51.93 -0.29 1.14 16 13 O -0.57 -13.50 10.90 -35.23 -0.38 -13.88 16 14 C -0.56 -15.63 9.34 -34.44 -0.32 -15.95 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.89 -27.31 13.96 55.43 0.77 -26.53 16 18 Si 0.92 23.64 26.18 -169.99 -4.45 19.19 16 19 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.27 -6.89 6.54 56.52 0.37 -6.52 16 21 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 22 C -0.08 -1.07 9.63 -39.46 -0.38 -1.45 16 23 C 0.07 0.94 6.72 -39.12 -0.26 0.68 16 24 O -0.49 -5.92 13.29 -34.21 -0.45 -6.38 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 29 H 0.12 1.25 8.00 -52.49 -0.42 0.83 16 30 H 0.08 1.06 7.87 -51.93 -0.41 0.65 16 31 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.07 1.34 6.47 -51.93 -0.34 1.00 16 33 H 0.06 0.91 5.90 -51.93 -0.31 0.61 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 36 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.36 7.52 9.04 45.56 0.41 7.93 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.38 2.73 9.07 45.56 0.41 3.15 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -34.02 328.64 -6.29 -40.31 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.17 Total: 6.61 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.08 Total: -10.21 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.36 Total: -36.65 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.19 Total: -24.20 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.45 Total: 19.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.02 -6.29 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.157 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds