Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00253 * 2 1 4 4 H 1.48509 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47115 * 299.99470 * 3 2 1 6 6 H 1.48495 * 109.47625 * 60.00092 * 3 2 1 7 7 C 1.38817 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00288 * 204.75659 * 7 2 1 9 9 N 1.36939 * 119.99969 * 24.76392 * 7 2 1 10 10 C 1.46499 * 119.99783 * 189.27609 * 9 7 2 11 11 C 1.52998 * 109.47389 * 89.99724 * 10 9 7 12 12 C 1.52999 * 109.47014 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47014 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47330 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47248 * 179.97438 * 14 13 12 16 16 C 1.34953 * 126.03345 * 124.99730 * 15 14 13 17 17 C 1.35319 * 107.74191 * 179.97438 * 16 15 14 18 18 C 1.39867 * 107.92211 * 0.02562 * 17 16 15 19 19 N 1.30838 * 108.20353 * 359.73827 * 18 17 16 20 20 C 1.46501 * 119.99829 * 9.27075 * 9 7 2 21 21 C 1.50704 * 109.47156 * 269.20609 * 20 9 7 22 22 O 1.20821 * 119.99806 * 0.02562 * 21 20 9 23 23 O 1.34225 * 119.99848 * 179.97438 * 21 20 9 24 24 H 0.97005 * 119.99366 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47282 * 329.98860 * 10 9 7 26 26 H 1.09003 * 109.46599 * 209.99869 * 10 9 7 27 27 H 1.09001 * 109.47048 * 59.99742 * 11 10 9 28 28 H 1.08998 * 109.46918 * 299.99643 * 11 10 9 29 29 H 1.09001 * 109.47073 * 60.00187 * 12 11 10 30 30 H 1.08998 * 109.47337 * 299.99816 * 12 11 10 31 31 H 1.08995 * 109.47614 * 59.99768 * 13 12 11 32 32 H 1.09003 * 109.47369 * 300.00102 * 13 12 11 33 33 H 1.09001 * 109.47283 * 59.99865 * 14 13 12 34 34 H 1.08998 * 109.46812 * 299.99688 * 14 13 12 35 35 H 1.07996 * 126.13113 * 0.02562 * 16 15 14 36 36 H 1.08000 * 126.03422 * 179.97438 * 17 16 15 37 37 H 1.07997 * 125.89944 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.47568 * 29.20726 * 20 9 7 39 39 H 1.09004 * 109.46805 * 149.21064 * 20 9 7 40 40 H 0.96707 * 116.99511 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0157 -1.2452 0.3922 9 7 1.4198 -2.3338 -0.4957 10 6 2.0644 -3.6366 -0.3129 11 6 1.5803 -4.2661 0.9949 12 6 2.2530 -5.6270 1.1854 13 6 1.7694 -6.2563 2.4935 14 6 2.4425 -7.6169 2.6844 15 7 1.9799 -8.2191 3.9372 16 6 1.4187 -9.4390 4.0720 17 6 1.1344 -9.6197 5.3825 18 6 1.5350 -8.4707 6.0722 19 7 2.0468 -7.6326 5.2076 20 6 0.1437 -2.2415 -1.2093 21 6 -0.9915 -2.4027 -0.2314 22 8 -0.7585 -2.5764 0.9414 23 8 -2.2615 -2.3523 -0.6631 24 1 -0.4849 0.8401 0.0004 25 1 3.1456 -3.5049 -0.2744 26 1 1.8075 -4.2893 -1.1473 27 1 0.4990 -4.3979 0.9562 28 1 1.8372 -3.6135 1.8292 29 1 3.3344 -5.4956 1.2239 30 1 1.9957 -6.2795 0.3511 31 1 0.6880 -6.3876 2.4556 32 1 2.0270 -5.6037 3.3277 33 1 3.5239 -7.4852 2.7226 34 1 2.1852 -8.2697 1.8503 35 1 1.2310 -10.1449 3.2765 36 1 0.6779 -10.4959 5.8187 37 1 1.4417 -8.3055 7.1354 38 1 0.0689 -1.2690 -1.6957 39 1 0.0901 -3.0289 -1.9612 40 1 -2.9556 -2.4614 0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = 1.212981 kcal Electronic energy + Delta-G solvation = -21825.010931 eV Core-core repulsion = 18449.281887 eV Total energy + Delta-G solvation = -3375.729043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14387 -38.67834 -36.52392 -35.35778 -34.30787 -32.88266 -31.20176 -30.16328 -28.96314 -27.17753 -25.51966 -23.27785 -21.63392 -21.15558 -20.52394 -20.45096 -19.78361 -17.21525 -16.85756 -16.57759 -15.77469 -15.27288 -15.02882 -14.80616 -14.40811 -14.09070 -13.95098 -13.50012 -13.32683 -13.02722 -12.92231 -12.70856 -11.96271 -11.80537 -11.60741 -11.33317 -11.19104 -10.84139 -10.77959 -10.65614 -10.62923 -10.46820 -10.24896 -10.00573 -9.82296 -9.63787 -9.46909 -9.05230 -8.65923 -8.50808 -7.10079 -5.93069 -3.18881 1.85818 2.48389 2.79211 3.36017 3.44258 3.46756 3.96616 4.36238 4.41551 4.60956 4.71610 4.86237 5.00354 5.15849 5.28134 5.30105 5.41852 5.49444 5.56124 5.67544 5.85408 5.91241 5.99060 6.24124 6.27702 6.31283 6.36493 6.49615 6.54676 6.60658 6.95922 6.97018 6.99483 7.08699 7.31423 7.66635 7.70963 7.93015 8.17939 9.03529 9.49892 9.74328 10.14339 11.18924 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.003443 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.752417 B = 8129.806722 C = 8554.831266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.003 4.003 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.571 5.571 10 C 0.147 3.853 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.127 4.127 14 C 0.131 3.869 15 N -0.367 5.367 16 C 0.050 3.950 17 C -0.281 4.281 18 C 0.037 3.963 19 N -0.291 5.291 20 C 0.189 3.811 21 C 0.477 3.523 22 O -0.513 6.513 23 O -0.546 6.546 24 H 0.256 0.744 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.144 0.856 37 H 0.180 0.820 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -17.013 1.876 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.291 5.291 10 C 0.021 3.979 11 C -0.175 4.175 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.010 3.990 15 N -0.149 5.149 16 C -0.097 4.097 17 C -0.311 4.311 18 C -0.149 4.149 19 N -0.112 5.112 20 C 0.059 3.941 21 C 0.316 3.684 22 O -0.399 6.399 23 O -0.356 6.356 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.188 0.812 36 H 0.162 0.838 37 H 0.197 0.803 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.427 -15.648 1.583 15.914 hybrid contribution -0.746 0.055 0.988 1.240 sum 1.681 -15.593 2.572 15.893 Atomic orbital electron populations 1.69848 1.05270 1.25668 1.54340 1.24753 0.95218 0.98473 1.01564 0.86128 0.79322 0.83592 0.77213 1.20278 1.21487 1.21986 1.19355 0.96871 0.85168 1.36339 0.90029 1.44273 1.18937 1.02808 1.63047 1.20972 0.96526 0.86302 0.94145 1.22254 1.00727 0.93552 1.00999 1.21560 1.00424 0.98104 0.95249 1.21870 1.00519 0.94222 0.99966 1.21923 1.00001 0.96259 0.80768 1.48910 1.46617 1.12421 1.06989 1.22587 0.98964 0.89173 0.98986 1.21488 1.14507 1.02072 0.93001 1.23890 0.98644 0.92474 0.99848 1.77405 1.23574 1.21997 0.88252 1.20409 0.81169 1.02222 0.90289 1.25362 0.82004 0.69870 0.91138 1.90494 1.84156 1.45712 1.19525 1.84647 1.18463 1.86565 1.45948 0.93336 0.93062 0.94291 0.91843 0.91866 0.92200 0.92554 0.91688 0.90481 0.89795 0.88801 0.81156 0.83797 0.80254 0.86920 0.93200 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.68 9.02 55.49 0.50 -25.18 16 2 C 0.00 -0.08 4.89 -17.43 -0.09 -0.17 16 3 Si 0.91 21.60 29.62 -169.99 -5.03 16.56 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.25 -6.65 9.70 -15.06 -0.15 -6.79 16 8 H 0.08 2.15 7.93 -52.49 -0.42 1.73 16 9 N -0.57 -13.77 2.09 -174.61 -0.37 -14.13 16 10 C 0.15 2.89 5.71 -4.04 -0.02 2.86 16 11 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 12 C -0.11 -1.59 5.21 -26.73 -0.14 -1.73 16 13 C -0.13 -1.74 5.40 -26.73 -0.14 -1.89 16 14 C 0.13 1.42 6.51 -4.04 -0.03 1.39 16 15 N -0.37 -4.63 3.68 -61.36 -0.23 -4.86 16 16 C 0.05 0.51 11.45 -17.22 -0.20 0.31 16 17 C -0.28 -2.91 10.80 -40.01 -0.43 -3.34 16 18 C 0.04 0.44 12.03 -17.37 -0.21 0.23 16 19 N -0.29 -4.26 12.42 30.62 0.38 -3.88 16 20 C 0.19 4.39 5.58 -5.19 -0.03 4.36 16 21 C 0.48 11.48 6.33 36.01 0.23 11.71 16 22 O -0.51 -13.89 14.42 -18.75 -0.27 -14.16 16 23 O -0.55 -11.30 13.42 -39.24 -0.53 -11.83 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 26 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 27 H 0.06 1.35 6.30 -51.93 -0.33 1.03 16 28 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 2.84 6.29 -51.93 -0.33 2.51 16 39 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 40 H 0.38 6.33 9.10 45.56 0.41 6.74 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -33.88 337.24 -7.04 -40.93 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.25 Total: 7.22 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.33 Total: 4.25 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.29 Total: -48.05 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.80 Total: -25.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.88 -7.04 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.142 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds