Wall clock time and date at job start Tue Mar 31 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47313 * 2 1 4 4 N 1.28596 * 124.61888 * 90.02479 * 3 2 1 5 5 C 1.31378 * 108.71694 * 180.02562 * 4 3 2 6 6 C 1.50704 * 127.04742 * 179.97438 * 5 4 3 7 7 C 1.39671 * 105.90096 * 0.02562 * 5 4 3 8 8 C 1.50702 * 127.04943 * 180.02562 * 7 5 4 9 9 S 1.81401 * 109.46964 * 90.00102 * 8 7 5 10 10 C 1.81406 * 103.00123 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47040 * 180.02562 * 10 9 8 12 12 C 1.50697 * 115.55150 * 65.33417 * 11 10 9 13 13 H 1.08000 * 119.99705 * 265.65593 * 12 11 10 14 14 C 1.37878 * 120.00118 * 85.65361 * 12 11 10 15 15 N 1.31515 * 119.99903 * 353.69663 * 14 12 11 16 16 Si 1.86796 * 120.00112 * 173.69384 * 14 12 11 17 17 H 1.48502 * 109.46978 * 59.99869 * 16 14 12 18 18 H 1.48496 * 109.47096 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47085 * 300.00109 * 16 14 12 20 20 C 1.53005 * 117.49650 * 279.65941 * 11 10 9 21 21 C 1.52999 * 117.49232 * 211.00389 * 11 10 9 22 22 N 1.28603 * 124.61680 * 269.73010 * 3 2 1 23 23 H 1.08995 * 109.47080 * 299.99775 * 1 2 3 24 24 H 1.09000 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47278 * 60.00018 * 1 2 3 26 26 H 1.08996 * 109.47028 * 120.00454 * 2 1 3 27 27 H 1.09007 * 109.46727 * 240.00102 * 2 1 3 28 28 H 1.09004 * 109.46463 * 89.97662 * 6 5 4 29 29 H 1.08998 * 109.47180 * 209.97334 * 6 5 4 30 30 H 1.08994 * 109.47267 * 329.97854 * 6 5 4 31 31 H 1.08995 * 109.47176 * 209.99941 * 8 7 5 32 32 H 1.09005 * 109.47199 * 330.00288 * 8 7 5 33 33 H 1.09001 * 109.46645 * 300.00060 * 10 9 8 34 34 H 1.09002 * 109.46938 * 59.99661 * 10 9 8 35 35 H 0.97002 * 120.00071 * 174.97436 * 15 14 12 36 36 H 1.08999 * 117.49936 * 0.02562 * 20 11 10 37 37 H 1.09001 * 117.49708 * 145.02229 * 20 11 10 38 38 H 1.09004 * 117.49318 * 214.97965 * 21 11 10 39 39 H 1.08997 * 117.50400 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2623 2.0698 1.0583 5 6 2.6829 3.2613 0.6983 6 6 3.0835 4.3954 1.6063 7 6 2.6814 3.2618 -0.6984 8 6 3.0816 4.3960 -1.6064 9 16 4.8545 4.2806 -1.9726 10 6 5.1408 5.7058 -3.0578 11 6 6.6154 5.7502 -3.4630 12 6 7.0904 4.6013 -4.3147 13 1 7.5513 3.7409 -3.8524 14 6 6.9365 4.6484 -5.6840 15 7 6.2660 5.6356 -6.2368 16 14 7.6803 3.3102 -6.7542 17 1 7.1050 1.9951 -6.3735 18 1 7.3746 3.5897 -8.1802 19 1 9.1522 3.2817 -6.5594 20 6 7.6065 6.3422 -2.4588 21 6 7.2359 7.1247 -3.7212 22 7 2.2666 2.0683 -1.0583 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 4.1491 4.3263 1.8253 29 1 2.8744 5.3455 1.1149 30 1 2.5170 4.3344 2.5355 31 1 2.5142 4.3356 -2.5350 32 1 2.8734 5.3462 -1.1144 33 1 4.5217 5.6130 -3.9502 34 1 4.8810 6.6229 -2.5291 35 1 6.2193 5.7091 -7.2029 36 1 7.2079 6.6997 -1.5094 37 1 8.6021 5.9009 -2.4144 38 1 7.9879 7.1978 -4.5068 39 1 6.5934 7.9973 -3.6028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853776752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:59 Heat of formation + Delta-G solvation = 119.318548 kcal Electronic energy + Delta-G solvation = -19290.455811 eV Core-core repulsion = 16362.601080 eV Total energy + Delta-G solvation = -2927.854731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45770 -36.52936 -35.42341 -32.88973 -32.14371 -31.89192 -28.77529 -27.74107 -27.29859 -25.25707 -23.38480 -21.26618 -21.08178 -20.83077 -19.15123 -17.30244 -16.51696 -16.20575 -15.15529 -14.80287 -14.58975 -14.07896 -13.88214 -13.73194 -13.60472 -13.47974 -13.19023 -12.80623 -12.51638 -12.45681 -12.32098 -11.80146 -11.65142 -11.44636 -10.97693 -10.95224 -10.82509 -10.64696 -10.45975 -10.22464 -9.96162 -9.61163 -9.38229 -8.79627 -8.68591 -8.38680 -7.97169 -6.74744 -6.00499 -4.05279 1.75128 2.09576 2.32016 3.01391 3.36130 3.39703 3.44065 3.54034 4.05848 4.46321 4.59719 4.62496 4.81152 4.86312 5.06861 5.24466 5.28821 5.29228 5.37568 5.42131 5.63492 5.70544 5.73704 5.88022 5.89320 6.00571 6.24957 6.26508 6.37534 6.43422 6.56390 6.77014 6.80771 6.84822 7.09703 7.44161 7.52357 7.92898 8.44036 8.45948 8.96139 9.60742 11.08651 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.004362 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.360515 B = 6416.976622 C = 7417.893195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.159 5.159 4 N -0.296 5.296 5 C 0.014 3.986 6 C -0.062 4.062 7 C 0.031 3.969 8 C -0.016 4.016 9 S -0.224 6.224 10 C -0.029 4.029 11 C 0.057 3.943 12 C -0.484 4.484 13 H 0.061 0.939 14 C 0.073 3.927 15 N -0.882 5.882 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.205 4.205 21 C -0.148 4.148 22 N -0.272 5.272 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 -4.955 12.818 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.060 5.060 4 N -0.138 5.138 5 C -0.150 4.150 6 C -0.121 4.121 7 C -0.133 4.133 8 C -0.166 4.166 9 S 0.004 5.996 10 C -0.178 4.178 11 C 0.055 3.945 12 C -0.522 4.522 13 H 0.079 0.921 14 C -0.130 4.130 15 N -0.519 5.519 16 Si 0.715 3.285 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.242 4.242 21 C -0.188 4.188 22 N -0.115 5.115 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.418 -7.042 12.990 18.079 hybrid contribution -0.230 1.025 -1.261 1.641 sum -10.648 -6.017 11.728 16.945 Atomic orbital electron populations 1.22172 0.93407 1.03625 1.03563 1.21905 0.95742 0.74756 1.05672 1.47900 1.45556 1.13216 0.99330 1.73910 1.18713 1.05108 1.16020 1.23010 1.04033 0.94346 0.93610 1.20052 1.02227 0.92848 0.96944 1.22178 1.04518 0.93541 0.93044 1.21429 0.99703 0.95429 1.00021 1.87143 1.04544 1.43982 1.63961 1.23138 1.02874 0.93224 0.98526 1.18417 0.86330 0.93856 0.95922 1.20352 1.39082 1.02240 0.90513 0.92097 1.24921 0.94326 0.95819 0.97926 1.69999 1.39409 1.31848 1.10642 0.86730 0.79752 0.82730 0.79305 1.20047 1.21374 1.20294 1.23020 1.01129 1.07244 0.92838 1.22575 1.03468 0.94970 0.97793 1.74034 1.17203 1.04802 1.15423 0.91588 0.89776 0.91419 0.87627 0.87414 0.89979 0.90288 0.91027 0.89038 0.88992 0.89752 0.93277 0.93066 0.91353 0.90355 0.89844 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.24 37.16 0.38 -0.90 16 2 C 0.14 1.31 7.26 -4.04 -0.03 1.28 16 3 N -0.16 -2.32 3.95 -10.62 -0.04 -2.36 16 4 N -0.30 -4.47 12.05 33.71 0.41 -4.07 16 5 C 0.01 0.21 7.35 -82.25 -0.60 -0.39 16 6 C -0.06 -0.70 10.34 36.01 0.37 -0.33 16 7 C 0.03 0.51 6.61 -82.25 -0.54 -0.04 16 8 C -0.02 -0.27 6.39 36.01 0.23 -0.04 16 9 S -0.22 -4.60 21.41 -107.50 -2.30 -6.90 16 10 C -0.03 -0.64 5.80 37.16 0.22 -0.43 16 11 C 0.06 1.38 1.34 -155.66 -0.21 1.17 16 12 C -0.48 -13.24 8.49 -34.44 -0.29 -13.53 16 13 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 14 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 15 N -0.88 -24.74 12.90 55.43 0.71 -24.02 16 16 Si 0.89 21.47 29.55 -169.99 -5.02 16.44 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.20 -4.46 9.96 -26.69 -0.27 -4.72 16 21 C -0.15 -3.41 9.40 -26.69 -0.25 -3.66 16 22 N -0.27 -4.63 12.05 33.71 0.41 -4.23 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.11 0.91 8.14 -51.92 -0.42 0.49 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.78 7.50 -51.93 -0.39 0.40 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.27 7.50 -51.92 -0.39 0.88 16 33 H 0.08 2.04 8.14 -51.92 -0.42 1.61 16 34 H 0.05 0.97 8.09 -51.92 -0.42 0.55 16 35 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -31.49 346.87 -7.95 -39.43 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.24 Total: 0.15 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.09 Total: -19.68 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 1.49 Total: -34.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -2.30 Total: -6.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.49 -7.95 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853776752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.753 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds