Wall clock time and date at job start Tue Mar 31 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99919 * 2 1 4 4 O 1.20831 * 119.99993 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99897 * 180.02562 * 3 2 1 6 6 C 1.52425 * 117.18293 * 296.97488 * 5 3 2 7 7 C 1.49860 * 60.68568 * 253.20316 * 6 5 3 8 8 H 1.09007 * 117.64382 * 107.52889 * 7 6 5 9 9 C 1.52833 * 115.50123 * 249.32879 * 7 6 5 10 10 C 1.52800 * 110.50192 * 94.00798 * 9 7 6 11 11 C 1.53781 * 108.98546 * 303.33873 * 10 9 7 12 12 N 1.46460 * 115.35499 * 84.94290 * 5 3 2 13 13 C 1.34775 * 120.61993 * 341.53288 * 12 5 3 14 14 O 1.21284 * 120.00354 * 335.37280 * 13 12 5 15 15 C 1.50699 * 120.00008 * 155.36548 * 13 12 5 16 16 H 1.08999 * 109.47207 * 342.92531 * 15 13 12 17 17 C 1.53003 * 109.47060 * 102.92142 * 15 13 12 18 18 C 1.50703 * 109.47459 * 222.92166 * 15 13 12 19 19 H 1.07997 * 120.00037 * 327.12038 * 18 15 13 20 20 C 1.37876 * 119.99783 * 147.11144 * 18 15 13 21 21 N 1.31519 * 119.99783 * 170.72634 * 20 18 15 22 22 Si 1.86802 * 120.00401 * 350.72870 * 20 18 15 23 23 H 1.48492 * 109.47106 * 269.99651 * 22 20 18 24 24 H 1.48505 * 109.46876 * 149.99608 * 22 20 18 25 25 H 1.48495 * 109.46963 * 30.00044 * 22 20 18 26 26 H 1.09009 * 109.46612 * 299.99635 * 1 2 3 27 27 H 1.08997 * 109.47481 * 59.99742 * 1 2 3 28 28 H 1.08994 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09005 * 117.51058 * 1.30424 * 6 5 3 30 30 H 1.09002 * 117.51083 * 146.38404 * 6 5 3 31 31 H 1.09001 * 109.27022 * 214.26981 * 9 7 6 32 32 H 1.09005 * 109.27223 * 333.74285 * 9 7 6 33 33 H 1.09001 * 109.53338 * 63.32511 * 10 9 7 34 34 H 1.08997 * 109.53009 * 183.55864 * 10 9 7 35 35 H 1.09000 * 109.93472 * 309.13596 * 11 10 9 36 36 H 1.08996 * 109.82427 * 188.20532 * 11 10 9 37 37 H 1.08999 * 109.47193 * 169.35808 * 17 15 13 38 38 H 1.08992 * 109.47300 * 289.36101 * 17 15 13 39 39 H 1.09005 * 109.46872 * 49.36132 * 17 15 13 40 40 H 0.97001 * 119.99874 * 354.95015 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2943 0.6969 1.2074 7 6 4.2171 2.1840 1.0397 8 1 3.5561 2.7348 1.7091 9 6 5.5371 2.8780 0.7055 10 6 5.6894 3.0386 -0.8064 11 6 5.5850 1.6551 -1.4695 12 7 4.1982 1.1914 -1.3192 13 6 3.5228 0.6935 -2.3738 14 8 2.6034 -0.0774 -2.1961 15 6 3.9097 1.0946 -3.7740 16 1 4.5249 1.9937 -3.7375 17 6 4.7016 -0.0389 -4.4288 18 6 2.6661 1.3693 -4.5797 19 1 1.7629 0.8097 -4.3864 20 6 2.6815 2.3351 -5.5636 21 7 1.6623 2.4516 -6.3866 22 14 4.1498 3.4781 -5.7277 23 1 3.9325 4.6862 -4.8921 24 1 4.3074 3.8806 -7.1484 25 1 5.3768 2.7760 -5.2731 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.6879 0.2413 1.9902 30 1 5.2660 0.2338 1.0355 31 1 5.5556 3.8614 1.1754 32 1 6.3646 2.2810 1.0890 33 1 4.8999 3.6877 -1.1853 34 1 6.6620 3.4770 -1.0301 35 1 6.2628 0.9561 -0.9796 36 1 5.8354 1.7325 -2.5275 37 1 4.8184 0.1669 -5.4928 38 1 5.6842 -0.1120 -3.9629 39 1 4.1663 -0.9793 -4.2973 40 1 0.9333 1.8127 -6.3494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886352813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:36 Heat of formation + Delta-G solvation = -89.765159 kcal Electronic energy + Delta-G solvation = -23899.736168 eV Core-core repulsion = 20487.769266 eV Total energy + Delta-G solvation = -3411.966903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.00791 -39.23182 -37.92268 -36.01613 -34.25048 -33.47703 -32.39032 -31.06622 -27.71871 -26.41982 -25.00908 -24.61008 -22.83750 -22.02883 -20.87004 -19.60432 -18.38395 -17.64683 -17.14990 -16.80881 -16.38713 -15.61290 -15.14233 -14.68963 -14.25368 -14.08886 -13.84921 -13.49067 -13.24080 -12.99225 -12.85280 -12.78105 -12.49651 -11.88898 -11.82449 -11.52025 -11.32443 -11.27465 -11.03251 -10.87405 -10.76031 -10.63282 -10.58658 -10.39324 -10.37616 -10.03896 -9.82250 -8.83006 -8.74005 -8.45444 -8.04889 -6.50508 -4.14298 2.25354 2.85972 3.25064 3.31448 3.34906 3.41841 3.50169 3.77471 4.43069 4.51331 4.66727 4.71388 4.86333 5.07821 5.13787 5.23528 5.34438 5.36293 5.47257 5.51422 5.59214 5.67284 5.70062 5.74830 5.83769 5.91736 5.99605 6.04504 6.15574 6.28900 6.43814 6.53084 6.68749 6.77527 6.89232 7.18347 7.69805 8.01717 8.06806 8.37704 8.89748 8.93223 9.55349 10.89852 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.007992 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.339178 B = 3502.673892 C = 4363.913586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.326 6.326 3 C 0.513 3.487 4 O -0.501 6.501 5 C 0.120 3.880 6 C -0.172 4.172 7 C -0.128 4.128 8 H 0.115 0.885 9 C -0.087 4.087 10 C -0.142 4.142 11 C 0.112 3.888 12 N -0.597 5.597 13 C 0.528 3.472 14 O -0.514 6.514 15 C 0.004 3.996 16 H 0.050 0.950 17 C -0.133 4.133 18 C -0.579 4.579 19 H 0.067 0.933 20 C 0.030 3.970 21 N -0.904 5.904 22 Si 1.045 2.955 23 H -0.281 1.281 24 H -0.282 1.282 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.049 0.951 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -1.392 15.169 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.240 6.240 3 C 0.354 3.646 4 O -0.388 6.388 5 C 0.032 3.968 6 C -0.211 4.211 7 C -0.148 4.148 8 H 0.133 0.867 9 C -0.124 4.124 10 C -0.180 4.180 11 C -0.010 4.010 12 N -0.335 5.335 13 C 0.320 3.680 14 O -0.387 6.387 15 C -0.018 4.018 16 H 0.068 0.932 17 C -0.191 4.191 18 C -0.617 4.617 19 H 0.085 0.915 20 C -0.175 4.175 21 N -0.537 5.537 22 Si 0.873 3.127 23 H -0.207 1.207 24 H -0.208 1.208 25 H -0.202 1.202 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.294 -0.248 14.339 17.090 hybrid contribution -0.889 -1.237 0.897 1.768 sum 8.405 -1.485 15.237 17.464 Atomic orbital electron populations 1.23198 0.76778 1.03345 1.02045 1.86550 1.22678 1.31959 1.82804 1.21833 0.89063 0.81778 0.71950 1.90655 1.66275 1.36710 1.45154 1.19356 0.86330 1.07106 0.84045 1.23114 1.03044 0.96025 0.98892 1.22236 0.99424 0.93626 0.99519 0.86729 1.21091 0.94174 1.00669 0.96486 1.22009 1.03185 0.97602 0.95247 1.21923 0.81596 0.94749 1.02735 1.47747 1.14233 1.66268 1.05227 1.22174 0.81389 0.77532 0.86914 1.90613 1.30600 1.31942 1.85562 1.19436 0.99015 0.95653 0.87677 0.93178 1.21973 0.96761 0.99445 1.00930 1.21873 0.96679 1.24242 1.18907 0.91461 1.25867 1.01886 0.97436 0.92284 1.70770 1.09361 1.37539 1.36064 0.83932 0.75467 0.76369 0.76964 1.20703 1.20826 1.20247 0.92629 0.91711 0.88358 0.87855 0.87414 0.90835 0.91004 0.90358 0.90194 0.91493 0.88395 0.92203 0.95554 0.93210 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.56 101.05 1.07 1.72 16 2 O -0.33 -6.42 8.86 -46.64 -0.41 -6.84 16 3 C 0.51 10.49 5.52 36.00 0.20 10.69 16 4 O -0.50 -11.28 16.78 -18.75 -0.31 -11.60 16 5 C 0.12 2.10 2.93 -133.43 -0.39 1.71 16 6 C -0.17 -2.18 9.28 -28.58 -0.27 -2.44 16 7 C -0.13 -1.67 5.77 -92.41 -0.53 -2.21 16 8 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 9 C -0.09 -0.90 5.82 -26.92 -0.16 -1.06 16 10 C -0.14 -1.72 6.01 -26.43 -0.16 -1.87 16 11 C 0.11 1.59 5.98 -3.37 -0.02 1.57 16 12 N -0.60 -11.26 3.07 -159.74 -0.49 -11.75 16 13 C 0.53 12.33 5.98 -10.99 -0.07 12.26 16 14 O -0.51 -13.49 13.67 -16.66 -0.23 -13.71 16 15 C 0.00 0.10 1.53 -92.92 -0.14 -0.04 16 16 H 0.05 1.12 3.45 -51.93 -0.18 0.95 16 17 C -0.13 -2.81 9.19 37.16 0.34 -2.47 16 18 C -0.58 -16.77 8.49 -34.44 -0.29 -17.07 16 19 H 0.07 2.21 7.67 -52.49 -0.40 1.81 16 20 C 0.03 0.88 5.47 -17.82 -0.10 0.78 16 21 N -0.90 -28.07 13.70 55.43 0.76 -27.31 16 22 Si 1.05 24.48 27.64 -169.99 -4.70 19.78 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -5.67 6.46 56.52 0.36 -5.30 16 26 H 0.06 0.77 8.13 -51.92 -0.42 0.35 16 27 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.20 7.88 -51.93 -0.41 0.79 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.77 7.98 -51.93 -0.41 0.36 16 36 H 0.10 1.43 5.65 -51.93 -0.29 1.14 16 37 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.03 0.45 7.94 -51.93 -0.41 0.04 16 39 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.27 8.47 8.73 -40.82 -0.36 8.11 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -35.63 325.49 -6.93 -42.56 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.93 Total: 2.39 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.52 Total: 1.57 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.27 Total: -39.06 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.96 Total: -32.15 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.70 Total: 19.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.63 -6.93 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886352813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.205 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds