Wall clock time and date at job start Tue Mar 31 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47325 * 2 1 4 4 C 1.53001 * 109.47041 * 239.99605 * 2 1 3 5 5 C 1.50706 * 109.47032 * 65.52797 * 4 2 1 6 6 H 1.08003 * 119.99889 * 5.31749 * 5 4 2 7 7 C 1.37875 * 120.00036 * 185.31599 * 5 4 2 8 8 N 1.31522 * 120.00002 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47038 * 60.00122 * 9 7 5 11 11 H 1.48499 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46977 * 300.00237 * 9 7 5 13 13 N 1.46898 * 109.47182 * 119.99952 * 2 1 3 14 14 C 1.48719 * 111.01893 * 181.49316 * 13 2 1 15 15 C 1.54374 * 104.52079 * 158.96369 * 14 13 2 16 16 C 1.54261 * 105.14886 * 336.27377 * 15 14 13 17 17 C 1.52995 * 110.32901 * 118.94368 * 16 15 14 18 18 O 1.42904 * 109.47141 * 61.45343 * 17 16 15 19 19 C 1.53007 * 110.31902 * 241.05191 * 16 15 14 20 20 F 1.39892 * 109.47188 * 58.54572 * 19 16 15 21 21 F 1.39905 * 109.47009 * 178.54484 * 19 16 15 22 22 F 1.39900 * 109.46944 * 298.53899 * 19 16 15 23 23 C 1.48559 * 110.99841 * 297.00206 * 13 2 1 24 24 H 1.08995 * 109.47038 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47088 * 300.00200 * 1 2 3 26 26 H 1.09001 * 109.46844 * 60.00201 * 1 2 3 27 27 H 1.09004 * 109.47165 * 185.52304 * 4 2 1 28 28 H 1.08997 * 109.47158 * 305.52829 * 4 2 1 29 29 H 0.96993 * 120.00056 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.38918 * 40.23981 * 14 13 2 31 31 H 1.09001 * 110.50537 * 277.75311 * 14 13 2 32 32 H 1.08991 * 110.32779 * 217.32032 * 15 14 13 33 33 H 1.09005 * 110.32388 * 95.21392 * 15 14 13 34 34 H 1.08999 * 109.47275 * 181.45088 * 17 16 15 35 35 H 1.08998 * 109.47294 * 301.45310 * 17 16 15 36 36 H 0.96697 * 114.00631 * 180.02562 * 18 17 16 37 37 H 1.09001 * 110.41720 * 82.18066 * 23 13 2 38 38 H 1.08998 * 110.41546 * 319.73702 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6525 0.0636 -2.4759 6 1 1.1741 1.0264 -2.3722 7 6 1.9087 -0.4472 -3.7307 8 7 2.4908 -1.6198 -3.8570 9 14 1.4278 0.5254 -5.2512 10 1 2.1317 1.8329 -5.2456 11 1 1.8083 -0.2370 -6.4674 12 1 -0.0397 0.7533 -5.2494 13 7 2.0197 -0.6925 1.1994 14 6 3.5059 -0.6813 1.2524 15 6 3.8420 -0.9247 2.7393 16 6 2.5915 -0.4636 3.5160 17 6 1.9919 -1.6325 4.3002 18 8 2.9472 -2.1085 5.2505 19 6 2.9477 0.6838 4.4635 20 9 3.4795 1.7481 3.7277 21 9 1.7958 1.1098 5.1337 22 9 3.8931 0.2425 5.3955 23 6 1.6035 0.0218 2.4337 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1255 -0.8078 -1.2011 28 1 1.5981 -1.7164 -1.3000 29 1 2.6707 -1.9793 -4.7397 30 1 3.8901 0.2862 0.9293 31 1 3.9160 -1.4799 0.6342 32 1 4.7094 -0.3338 3.0331 33 1 4.0286 -1.9839 2.9168 34 1 1.0956 -1.2979 4.8226 35 1 1.7324 -2.4368 3.6119 36 1 2.6344 -2.8516 5.7843 37 1 0.5822 -0.2477 2.7030 38 1 1.6894 1.0997 2.2965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886808949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:02 Heat of formation + Delta-G solvation = -207.555585 kcal Electronic energy + Delta-G solvation = -23771.641943 eV Core-core repulsion = 19812.710524 eV Total energy + Delta-G solvation = -3958.931419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.05759 -47.57198 -47.44688 -39.47338 -36.87623 -34.60044 -32.47479 -30.49722 -29.11724 -26.77618 -25.85431 -25.17499 -22.97021 -21.83460 -20.12731 -19.32608 -18.34935 -18.17084 -17.55149 -17.12034 -16.55990 -15.49396 -14.70584 -14.65124 -14.40199 -14.32240 -14.19502 -13.98964 -13.86505 -13.75650 -13.62663 -13.56836 -12.98382 -12.57071 -12.26177 -12.09650 -11.86358 -11.56678 -11.30577 -11.22138 -10.90673 -10.81846 -10.79619 -10.67960 -10.40964 -10.16892 -9.92843 -9.28038 -9.16272 -8.36517 -8.04675 -6.02043 -4.04114 2.74127 3.31654 3.36562 3.38509 3.62375 3.75625 3.96677 4.22408 4.38410 4.52964 4.69929 4.71357 4.97653 5.21009 5.33794 5.36928 5.39339 5.51198 5.67444 5.73111 5.81607 5.94263 6.02349 6.20305 6.25881 6.33728 6.56859 6.78224 7.04850 7.27567 7.37911 7.40796 7.68060 7.81447 8.02155 8.39584 9.01761 9.59331 11.09233 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032353 B = 0.004219 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.237146 B = 6635.380023 C = 6786.992292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.074 3.926 3 H 0.032 0.968 4 C 0.034 3.966 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.499 5.499 14 C 0.036 3.964 15 C -0.105 4.105 16 C -0.107 4.107 17 C 0.091 3.909 18 O -0.565 6.565 19 C 0.460 3.540 20 F -0.184 7.184 21 F -0.187 7.187 22 F -0.170 7.170 23 C 0.044 3.956 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.014 0.986 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.382 0.618 37 H 0.092 0.908 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 0.572 17.863 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 H 0.050 0.950 4 C -0.003 4.003 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.224 5.224 14 C -0.092 4.092 15 C -0.143 4.143 16 C -0.109 4.109 17 C 0.013 3.987 18 O -0.371 6.371 19 C 0.406 3.594 20 F -0.165 7.165 21 F -0.168 7.168 22 F -0.151 7.151 23 C -0.085 4.085 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.110 0.890 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.305 0.413 17.438 17.446 hybrid contribution -0.228 1.187 -0.501 1.308 sum -0.533 1.600 16.937 17.021 Atomic orbital electron populations 1.21720 0.95006 1.01704 1.00262 1.22096 0.95389 0.95530 0.90330 0.94977 1.19127 0.96083 0.96209 0.88926 1.21132 1.39522 1.04282 0.90843 0.92768 1.24972 0.95245 0.94954 0.99009 1.69954 1.42398 1.17433 1.23441 0.86684 0.78971 0.80047 0.82454 1.20315 1.21295 1.20243 1.65609 1.07408 1.48179 1.01197 1.23142 0.89420 1.01943 0.94702 1.22373 0.94205 1.03305 0.94446 1.22697 1.00775 0.92492 0.94963 1.22105 0.90338 0.95143 0.91116 1.86529 1.42818 1.54453 1.53302 1.20408 0.74654 0.83614 0.80718 1.93170 1.86793 1.59520 1.77018 1.93147 1.50302 1.91243 1.82142 1.93208 1.65407 1.89126 1.67372 1.23092 0.97956 0.97609 0.89837 0.92546 0.95118 0.91324 0.96746 0.95276 0.92937 0.93341 0.88803 0.90830 0.89027 0.92716 0.90335 0.77061 0.88996 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.94 37.16 0.33 -2.04 16 2 C 0.07 1.48 1.85 -67.71 -0.13 1.36 16 3 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 4 C 0.03 0.84 4.46 -27.88 -0.12 0.72 16 5 C -0.52 -14.15 8.31 -34.44 -0.29 -14.43 16 6 H 0.05 1.44 7.30 -52.48 -0.38 1.05 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.50 -8.52 5.20 -221.88 -1.15 -9.67 16 14 C 0.04 0.58 5.42 -2.10 -0.01 0.57 16 15 C -0.11 -1.42 5.71 -25.35 -0.14 -1.57 16 16 C -0.11 -1.38 0.44 -153.12 -0.07 -1.45 16 17 C 0.09 0.96 5.54 37.16 0.21 1.17 16 18 O -0.57 -5.74 11.56 -35.23 -0.41 -6.15 16 19 C 0.46 6.23 2.06 37.16 0.08 6.30 16 20 F -0.18 -2.67 16.04 2.25 0.04 -2.64 16 21 F -0.19 -2.47 16.64 2.25 0.04 -2.43 16 22 F -0.17 -2.39 15.36 2.25 0.03 -2.35 16 23 C 0.04 0.62 4.33 -2.18 -0.01 0.61 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.47 7.02 -51.93 -0.36 0.11 16 26 H 0.07 1.34 7.10 -51.93 -0.37 0.97 16 27 H 0.01 0.38 6.71 -51.93 -0.35 0.03 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.05 0.82 7.95 -51.93 -0.41 0.41 16 31 H 0.09 1.61 7.56 -51.93 -0.39 1.22 16 32 H 0.07 0.97 7.39 -51.93 -0.38 0.59 16 33 H 0.09 1.18 7.52 -51.93 -0.39 0.79 16 34 H 0.05 0.52 7.82 -51.93 -0.41 0.11 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.38 2.08 9.12 45.56 0.42 2.49 16 37 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 38 H 0.06 0.83 7.05 -51.93 -0.37 0.46 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -30.16 312.12 -5.89 -36.05 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.60 Total: -1.03 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.25 Total: -7.19 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.42 Total: -35.22 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.41 Total: -6.15 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.11 Total: -7.42 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.16 -5.89 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886808949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.510 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds