Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30172 * 126.81244 * 2 1 4 4 O 1.20889 * 111.74329 * 179.97438 * 3 2 1 5 5 C 1.34288 * 111.63027 * 359.76203 * 4 3 2 6 6 C 1.35853 * 106.35949 * 0.37872 * 5 4 3 7 7 N 1.40775 * 128.06255 * 179.91580 * 6 5 4 8 8 C 1.34777 * 119.99505 * 359.67368 * 7 6 5 9 9 O 1.21597 * 120.00423 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46836 * 299.99612 * 12 11 10 14 14 C 1.53000 * 109.47371 * 59.99504 * 12 11 10 15 15 C 1.53003 * 109.47182 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.46808 * 179.97438 * 15 12 11 17 17 H 1.07996 * 120.00289 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00080 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00211 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47455 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47057 * 120.00377 * 20 18 16 23 23 H 1.48508 * 109.46895 * 239.99925 * 20 18 16 24 24 H 1.09000 * 109.47138 * 270.04565 * 1 2 3 25 25 H 1.09002 * 109.46904 * 30.04177 * 1 2 3 26 26 H 1.08997 * 109.47275 * 150.04138 * 1 2 3 27 27 H 1.07999 * 126.82181 * 180.26179 * 5 4 3 28 28 H 0.96996 * 120.00607 * 179.68023 * 7 6 5 29 29 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 30 30 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 31 31 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 32 32 H 1.09003 * 109.47126 * 60.00153 * 13 12 11 33 33 H 1.08996 * 109.47277 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.47339 * 300.00075 * 13 12 11 35 35 H 1.08998 * 109.46763 * 60.00533 * 14 12 11 36 36 H 1.08996 * 109.47041 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47083 * 300.00462 * 14 12 11 38 38 H 1.08993 * 109.47057 * 299.99535 * 15 12 11 39 39 H 1.09001 * 109.47095 * 59.99863 * 15 12 11 40 40 H 0.96993 * 120.00031 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4543 0.7279 0.0005 5 6 3.6078 -0.6062 0.0061 6 6 2.3565 -1.1353 0.0007 7 7 1.9888 -2.4942 0.0017 8 6 2.9396 -3.4495 0.0021 9 8 4.1149 -3.1376 0.0021 10 7 2.5876 -4.7506 0.0025 11 6 3.6210 -5.7889 -0.0030 12 6 2.9584 -7.1679 -0.0018 13 6 2.0927 -7.3167 1.2509 14 6 2.0821 -7.3138 -1.2476 15 6 4.0377 -8.2524 -0.0082 16 6 3.3849 -9.6107 -0.0065 17 1 2.3081 -9.6923 -0.0018 18 6 4.1625 -10.7493 -0.0120 19 7 5.4739 -10.6499 -0.0183 20 14 3.3535 -12.4329 -0.0106 21 1 1.8772 -12.2727 -0.0037 22 1 3.7642 -13.1805 -1.2262 23 1 3.7760 -13.1841 1.1988 24 1 -0.3633 0.0008 1.0277 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3634 -0.8903 -0.5132 27 1 4.5406 -1.1504 0.0117 28 1 1.0513 -2.7430 0.0019 29 1 1.6501 -4.9993 0.0022 30 1 4.2376 -5.6832 -0.8957 31 1 4.2456 -5.6847 0.8843 32 1 1.3238 -6.5441 1.2550 33 1 1.6210 -8.2993 1.2520 34 1 2.7169 -7.2128 2.1384 35 1 2.6989 -7.2079 -2.1400 36 1 1.6097 -8.2961 -1.2465 37 1 1.3133 -6.5412 -1.2434 38 1 4.6540 -8.1463 -0.9009 39 1 4.6622 -8.1487 0.8791 40 1 6.0210 -11.4508 -0.0218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888728539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = 15.342572 kcal Electronic energy + Delta-G solvation = -21819.537764 eV Core-core repulsion = 18444.421426 eV Total energy + Delta-G solvation = -3375.116338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.02727 -40.32743 -37.54704 -35.85004 -33.96287 -33.62224 -32.20349 -30.70086 -28.90741 -27.19025 -26.59862 -26.31509 -23.66527 -22.49707 -21.92245 -20.67610 -18.75127 -18.50929 -17.72145 -17.43424 -16.66096 -16.30586 -15.61988 -15.10971 -14.51873 -14.29840 -13.97762 -13.93690 -13.68191 -13.42857 -13.16768 -12.85705 -12.73007 -12.43474 -12.12287 -11.63732 -11.48101 -11.21267 -11.08289 -10.89302 -10.71393 -10.49221 -10.36726 -10.30389 -9.96913 -9.95107 -9.29277 -9.08179 -8.98582 -8.44577 -8.40915 -6.04860 -4.06399 1.38437 1.95450 2.23432 3.17162 3.26718 3.35123 3.36779 3.38859 3.86219 4.16500 4.22052 4.41232 4.80648 5.12083 5.16817 5.30787 5.31327 5.37412 5.53404 5.63080 5.64862 5.72606 6.07241 6.09408 6.13981 6.28017 6.29955 6.42437 6.54976 6.62566 6.71555 6.97396 6.99727 7.04430 7.58185 7.69579 7.79921 7.93550 8.09943 8.33985 8.39884 8.98537 9.57137 11.06606 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045713 B = 0.002947 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.368710 B = 9498.687267 C = 9909.380822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.002 4.002 3 N -0.356 5.356 4 O 0.099 5.901 5 C -0.071 4.071 6 C 0.050 3.950 7 N -0.653 5.653 8 C 0.702 3.298 9 O -0.578 6.578 10 N -0.726 5.726 11 C 0.145 3.855 12 C -0.073 4.073 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.036 3.964 16 C -0.512 4.512 17 H 0.060 0.940 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.237 0.763 28 H 0.410 0.590 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 16.980 0.061 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.163 4.163 3 N -0.062 5.062 4 O 0.035 5.965 5 C -0.155 4.155 6 C -0.050 4.050 7 N -0.303 5.303 8 C 0.402 3.598 9 O -0.455 6.455 10 N -0.380 5.380 11 C 0.022 3.978 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.253 0.747 28 H 0.246 0.754 29 H 0.233 0.767 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.595 18.376 0.059 20.730 hybrid contribution -1.276 -2.262 -0.003 2.597 sum -10.871 16.114 0.055 19.438 Atomic orbital electron populations 1.20137 0.85764 1.03809 1.03423 1.23260 0.98790 0.87527 1.06739 1.73794 0.89773 1.23681 1.18925 1.84857 1.20638 1.23131 1.67910 1.26260 1.00924 0.81931 1.06426 1.18289 0.93072 0.84758 1.08896 1.41878 1.09755 1.01316 1.77359 1.15875 0.84545 0.81095 0.78273 1.90817 1.16289 1.80991 1.57449 1.45324 1.11308 1.03400 1.78005 1.21626 0.88864 0.85183 1.02131 1.20937 0.97994 0.93233 0.95154 1.21765 0.98316 1.01085 0.97272 1.21765 0.98261 1.01091 0.97326 1.19094 0.92192 0.91248 0.97602 1.21202 0.92913 0.90539 1.50361 0.92198 1.25015 0.94799 0.99174 0.95503 1.69970 1.03725 1.28807 1.50788 0.86592 0.79531 0.84617 0.77572 1.19813 1.21116 1.21109 0.90090 0.90140 0.90426 0.74727 0.75436 0.76732 0.91570 0.91530 0.95356 0.91344 0.93267 0.93262 0.91338 0.95372 0.96245 0.96246 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.48 36.01 0.38 -0.11 16 2 C 0.00 -0.02 7.34 -81.94 -0.60 -0.62 16 3 N -0.36 -4.43 12.06 33.56 0.40 -4.03 16 4 O 0.10 1.22 11.20 16.52 0.19 1.41 16 5 C -0.07 -0.87 11.17 29.88 0.33 -0.54 16 6 C 0.05 0.59 7.16 -83.24 -0.60 -0.01 16 7 N -0.65 -6.82 5.48 -13.99 -0.08 -6.90 16 8 C 0.70 9.57 8.54 -86.91 -0.74 8.82 16 9 O -0.58 -9.76 13.75 5.28 0.07 -9.69 16 10 N -0.73 -9.30 4.96 -65.22 -0.32 -9.63 16 11 C 0.14 2.34 4.56 -4.04 -0.02 2.32 16 12 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 13 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 14 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 15 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 16 C -0.51 -13.12 7.65 -34.44 -0.26 -13.39 16 17 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.24 2.93 6.14 -52.49 -0.32 2.61 16 28 H 0.41 2.87 8.79 -40.82 -0.36 2.51 16 29 H 0.40 4.09 6.18 -40.82 -0.25 3.84 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.36 6.87 -51.93 -0.36 0.00 16 33 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 37 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -30.83 329.92 -5.82 -36.65 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.57 Total: 2.85 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.21 Total: -6.25 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.74 Total: -45.63 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.26 Total: -8.28 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.83 -5.82 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888728539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.994 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds