Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30172 * 126.81244 * 2 1 4 4 O 1.20889 * 111.74329 * 179.97438 * 3 2 1 5 5 C 1.34288 * 111.63027 * 359.76203 * 4 3 2 6 6 C 1.35853 * 106.35949 * 0.37872 * 5 4 3 7 7 N 1.40775 * 128.06255 * 179.91580 * 6 5 4 8 8 C 1.34777 * 119.99505 * 359.67368 * 7 6 5 9 9 O 1.21597 * 120.00423 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46836 * 299.99612 * 12 11 10 14 14 C 1.53000 * 109.47371 * 59.99504 * 12 11 10 15 15 C 1.53003 * 109.47182 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.46808 * 179.97438 * 15 12 11 17 17 H 1.07996 * 120.00289 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00080 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00211 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47455 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47057 * 120.00377 * 20 18 16 23 23 H 1.48508 * 109.46895 * 239.99925 * 20 18 16 24 24 H 1.09000 * 109.47138 * 270.04565 * 1 2 3 25 25 H 1.09002 * 109.46904 * 30.04177 * 1 2 3 26 26 H 1.08997 * 109.47275 * 150.04138 * 1 2 3 27 27 H 1.07999 * 126.82181 * 180.26179 * 5 4 3 28 28 H 0.96996 * 120.00607 * 179.68023 * 7 6 5 29 29 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 30 30 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 31 31 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 32 32 H 1.09003 * 109.47126 * 60.00153 * 13 12 11 33 33 H 1.08996 * 109.47277 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.47339 * 300.00075 * 13 12 11 35 35 H 1.08998 * 109.46763 * 60.00533 * 14 12 11 36 36 H 1.08996 * 109.47041 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47083 * 300.00462 * 14 12 11 38 38 H 1.08993 * 109.47057 * 299.99535 * 15 12 11 39 39 H 1.09001 * 109.47095 * 59.99863 * 15 12 11 40 40 H 0.96993 * 120.00031 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4543 0.7279 0.0005 5 6 3.6078 -0.6062 0.0061 6 6 2.3565 -1.1353 0.0007 7 7 1.9888 -2.4942 0.0017 8 6 2.9396 -3.4495 0.0021 9 8 4.1149 -3.1376 0.0021 10 7 2.5876 -4.7506 0.0025 11 6 3.6210 -5.7889 -0.0030 12 6 2.9584 -7.1679 -0.0018 13 6 2.0927 -7.3167 1.2509 14 6 2.0821 -7.3138 -1.2476 15 6 4.0377 -8.2524 -0.0082 16 6 3.3849 -9.6107 -0.0065 17 1 2.3081 -9.6923 -0.0018 18 6 4.1625 -10.7493 -0.0120 19 7 5.4739 -10.6499 -0.0183 20 14 3.3535 -12.4329 -0.0106 21 1 1.8772 -12.2727 -0.0037 22 1 3.7642 -13.1805 -1.2262 23 1 3.7760 -13.1841 1.1988 24 1 -0.3633 0.0008 1.0277 25 1 -0.3633 0.8896 -0.5145 26 1 -0.3634 -0.8903 -0.5132 27 1 4.5406 -1.1504 0.0117 28 1 1.0513 -2.7430 0.0019 29 1 1.6501 -4.9993 0.0022 30 1 4.2376 -5.6832 -0.8957 31 1 4.2456 -5.6847 0.8843 32 1 1.3238 -6.5441 1.2550 33 1 1.6210 -8.2993 1.2520 34 1 2.7169 -7.2128 2.1384 35 1 2.6989 -7.2079 -2.1400 36 1 1.6097 -8.2961 -1.2465 37 1 1.3133 -6.5412 -1.2434 38 1 4.6540 -8.1463 -0.9009 39 1 4.6622 -8.1487 0.8791 40 1 6.0210 -11.4508 -0.0218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888728539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = -5.334936 kcal Electronic energy + Delta-G solvation = -21820.434408 eV Core-core repulsion = 18444.421426 eV Total energy + Delta-G solvation = -3376.012982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.91142 -41.43820 -38.93585 -36.84737 -35.35644 -34.64432 -33.92383 -31.67960 -29.55880 -29.05102 -27.92655 -27.62020 -25.18451 -23.86743 -22.78081 -21.76828 -20.03544 -19.50396 -18.63211 -18.62052 -18.33024 -17.56116 -16.75284 -16.55883 -16.07226 -15.56813 -15.31480 -14.88441 -14.65349 -14.35117 -14.23105 -14.07051 -13.91412 -13.87810 -13.42075 -12.91995 -12.68390 -12.68163 -12.47024 -12.30989 -12.29918 -12.21220 -11.93321 -11.55867 -11.51432 -10.97919 -10.83116 -10.80676 -10.50251 -10.26527 -9.39356 -8.12580 -6.19765 0.45666 1.07442 1.22124 1.42724 1.44531 1.55387 2.11381 2.42932 2.46956 2.99623 3.22560 3.28177 3.46136 3.95828 4.02454 4.11927 4.25056 4.46758 4.67603 4.70239 4.70669 4.76064 4.80240 4.84502 4.99845 5.12421 5.13829 5.16267 5.35981 5.38644 5.47872 5.54663 5.57016 5.59919 5.78901 5.83746 5.92900 6.32994 6.86615 6.96410 7.20386 7.34914 7.48124 9.00098 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045713 B = 0.002947 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.368710 B = 9498.687267 C = 9909.380822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 N -0.379 5.379 4 O 0.085 5.915 5 C -0.080 4.080 6 C 0.041 3.959 7 N -0.632 5.632 8 C 0.701 3.299 9 O -0.614 6.614 10 N -0.711 5.711 11 C 0.160 3.840 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.511 4.511 17 H 0.073 0.927 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.956 3.044 21 H -0.256 1.256 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.229 0.771 28 H 0.430 0.570 29 H 0.414 0.586 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.072 0.928 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 17.432 0.072 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 N -0.088 5.088 4 O 0.025 5.975 5 C -0.165 4.165 6 C -0.060 4.060 7 N -0.284 5.284 8 C 0.401 3.599 9 O -0.494 6.494 10 N -0.367 5.367 11 C 0.036 3.964 12 C -0.065 4.065 13 C -0.180 4.180 14 C -0.180 4.180 15 C 0.001 3.999 16 C -0.549 4.549 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.180 1.180 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.245 0.755 28 H 0.270 0.730 29 H 0.253 0.747 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.235 18.841 0.070 23.025 hybrid contribution -0.157 -2.325 -0.005 2.330 sum -13.392 16.516 0.065 21.263 Atomic orbital electron populations 1.20387 0.82708 1.05358 1.04904 1.23849 1.00446 0.86300 1.04289 1.73792 0.89938 1.24660 1.20372 1.84843 1.20986 1.23031 1.68647 1.26255 1.01352 0.82216 1.06653 1.18437 0.93085 0.85315 1.09130 1.41539 1.10232 1.00264 1.76331 1.15940 0.84444 0.81474 0.78004 1.90816 1.18197 1.81575 1.58817 1.44905 1.11340 1.02526 1.77937 1.21165 0.89202 0.85406 1.00661 1.20717 0.96689 0.91868 0.97186 1.21704 0.98731 1.01882 0.95640 1.21704 0.98669 1.01893 0.95700 1.18979 0.93229 0.93166 0.94506 1.21635 0.93582 0.91279 1.48396 0.90851 1.25927 0.95270 1.03406 0.95619 1.70122 1.05404 1.29714 1.52762 0.85527 0.79387 0.79742 0.77168 1.17954 1.21227 1.21216 0.88488 0.89563 0.87958 0.75491 0.73013 0.74735 0.93206 0.93178 0.90930 0.92696 0.94410 0.94398 0.92692 0.90933 0.99440 0.99449 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.48 71.24 0.75 0.02 16 2 C 0.01 0.24 7.34 43.69 0.32 0.57 16 3 N -0.38 -9.02 12.06 -48.98 -0.59 -9.61 16 4 O 0.09 2.11 11.20 69.31 0.78 2.88 16 5 C -0.08 -1.96 11.17 67.27 0.75 -1.21 16 6 C 0.04 0.87 7.16 38.03 0.27 1.14 16 7 N -0.63 -11.35 5.48 -316.42 -1.73 -13.08 16 8 C 0.70 17.78 8.54 179.05 1.53 19.31 16 9 O -0.61 -20.58 13.75 -4.02 -0.06 -20.64 16 10 N -0.71 -16.40 4.96 -478.51 -2.37 -18.78 16 11 C 0.16 5.11 4.56 86.38 0.39 5.50 16 12 C -0.06 -2.20 0.54 -52.18 -0.03 -2.23 16 13 C -0.12 -3.70 8.05 71.98 0.58 -3.12 16 14 C -0.12 -3.70 8.05 71.98 0.58 -3.12 16 15 C 0.04 1.88 4.04 29.85 0.12 2.00 16 16 C -0.51 -26.35 7.65 25.60 0.20 -26.16 16 17 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 18 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 19 N -0.94 -55.99 13.29 21.45 0.28 -55.70 16 20 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 24 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.48 8.09 -2.39 -0.02 0.46 16 27 H 0.23 5.88 6.14 -2.91 -0.02 5.86 16 28 H 0.43 4.11 8.79 -92.71 -0.82 3.29 16 29 H 0.41 6.66 6.18 -92.71 -0.57 6.08 16 30 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.07 1.54 6.87 -2.39 -0.02 1.53 16 33 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 37 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -69.61 329.92 3.95 -65.67 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -0.31 Total: 11.80 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.92 Total: -7.13 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -4.41 Total: -97.17 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.72 Total: -17.75 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -69.61 3.95 -65.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888728539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.334 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds